@article{UBHD-68611673, author={Abele, Florian and H{\"o}fer, Katharina and Bernhard, Patrick and Grawenhoff, Julia and Seidel, Maximilian and Krause, André and Kopf, Sara and Schr{\"o}ter, Martin and J{\"a}schke, Andres}, title={A novel NAD-RNA decapping pathway discovered by synthetic light-up NAD-RNAs}, year={2020}, pages={1-15}, language={eng}, issn={2218-273X}, volume={10}, note={Gesehen am 02.07.2020}, journal={Biomolecules}, doi={10.3390/biom10040513}, } @article{UBHD-67284863, author={Agresti, Jeremy J. and J{\"a}schke, Andres}, title={Selection of ribozymes that catalyse multiple-turnover Diels-Alder cycloadditions by using in vitro compartmentalization}, year={2005}, pages={16170-16175}, language={eng}, issn={0027-8424}, volume={102}, journal={Proceedings of the National Academy of Sciences of the United States of America}, } @article{UBHD-68656837, author={Ameta, Sandeep and Winz, Marie-Luise and Previti, Christopher and J{\"a}schke, Andres}, title={Next-generation sequencing reveals how RNA catalysts evolve from random space}, year={2014}, pages={1303-1310}, language={eng}, issn={1362-4962}, volume={42}, number={2}, note={Published online 23 October 2013 ; Gesehen am 03.11.2020}, journal={Nucleic acids research}, doi={10.1093/nar/gkt949}, } @article{UBHD-68738229, author={Ameta, Sandeep and J{\"a}schke, Andres}, title={An RNA catalyst that reacts with a mechanistic inhibitor of serine proteases}, year={2013}, pages={957-964}, language={eng}, issn={2041-6539}, volume={4}, number={3}, note={ First published 31 Oct 2012 ; Gesehen am 17.05.2021}, journal={Chemical science}, doi={10.1039/C2SC21588H}, } @article{UBHD-68641551, author={Ameta, Sandeep and Becker, Juliane and J{\"a}schke, Andres}, title={RNA-peptide conjugate synthesis by inverse-electron demand Diels-Alder reaction}, year={2014}, pages={4701-4707}, language={eng}, issn={1477-0539}, volume={12}, number={26}, note={Gesehen am 30.09.2020}, journal={Organic & biomolecular chemistry}, doi={10.1039/C4OB00076E}, } @incollection{UBHD-67283376, author={Amontov, Sergey and J{\"a}schke, Andres}, title={Controlling the rate of organic reactions}, subtitle={rational design of allosteric Diels-Alderase ribozymes}, year={2006}, pages={5032–5038}, language={eng}, booktitle={Direct structural analysis of modified RNA by fluorescent in-line probing}, } @article{UBHD-68621309, author={Arora, Ankita and S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, title={Dual-colour imaging of RNAs using quencher- and fluorophore-binding aptamers}, year={2015}, pages={9 S.}, language={eng}, issn={1362-4962}, volume={43(2015}, note={Gesehen am 28.07.2020}, journal={Nucleic acids research}, doi={10.1093/nar/gkv718}, } @article{UBHD-69162929, author={Bargstedt, J{\"o}rn and Reinschmidt, Martin and Tydecks, Leon and Kolmar, Theresa and Hendrich, Christoph and J{\"a}schke, Andres}, title={Photochromic nucleosides and oligonucleotides}, edition={Online version of record before inclusion in an issue}, year={2023}, pages={1-26}, language={eng}, issn={1521-3773}, number={Artikel-ID e202310797}, note={Gesehen am 18.01.2024}, journal={Angewandte Chemie}, doi={10.1002/anie.202310797}, } @article{UBHD-67282739, author={Bereźniak, Tomasz and Zahran, Mai and J{\"a}schke, Andres and Smith, Jeremy C.}, title={Magnesium-dependent active-site conformational selection in the Diels-Alderase ribozyme}, year={2010}, pages={12587-12596}, language={eng}, issn={0002-7863}, volume={132}, journal={Journal of the American Chemical Society}, } @article{UBHD-68245139, author={Bereźniak, Tomasz and J{\"a}schke, Andres and Smith, Jeremy C. and Imhof, Petra}, title={Stereoselection in the Diels-Alderase ribozyme}, subtitle={a molecular dynamics study}, year={2012}, pages={1603-1614}, language={eng}, issn={1096-987X}, volume={33}, note={Gesehen am 20.04.2018}, journal={Journal of computational chemistry}, doi={10.1002/jcc.22993}, } @article{UBHD-67282682, author={Bereźniak, Tomasz and J{\"a}schke, Andres and Smith, Jeremy C. and Imhof, Petra}, title={Stereoselection in the Diels-Alderase ribozyme}, subtitle={a molecular dynamics study}, year={2012}, pages={1603-1614}, language={eng}, issn={0192-8651}, volume={33}, journal={Journal of computational chemistry}, } @article{UBHD-68650747, author={Buckup, Tiago and Sarter, Christopher and Volpp, Hans-Robert and J{\"a}schke, Andres and Motzkus, Marcus}, title={Ultrafast time-resolved spectroscopy of diarylethene-based photoswitchable deoxyuridine nucleosides}, year={2015}, pages={4717-4721}, language={eng}, issn={1948-7185}, volume={6}, number={23}, note={Gesehen am 20.10.2020}, journal={The journal of physical chemistry letters}, doi={10.1021/acs.jpclett.5b01949}, } @article{UBHD-68620936, author={B{\"u}llmann, Simon and J{\"a}schke, Andres}, title={Norbornadiene-bridged diarylethenes and their conversion into turn-off fluorescent photoswitches}, year={2020}, pages={7124-7127}, language={eng}, issn={1364-548X}, volume={56}, number={52}, note={Gesehen am 27.07.2020}, journal={Chemical communications}, doi={10.1039/D0CC02210A}, } @article{UBHD-67751235, author={Cahová, Hana and Winz, Marie-Luise and H{\"o}fer, Katharina and N{\"u}bel, Gabriele and J{\"a}schke, Andres}, title={NAD captureSeq indicates NAD as a bacterial cap for a subset of regulatory RNAs}, year={2014}, pages={17 S.}, language={eng}, issn={1476-4687}, volume={519(2015}, number={7543) S. 374-377 + [13] S.}, note={Gesehen am 02.01.2015}, journal={Nature}, doi={10.1038/nature14020}, } @article{UBHD-68695669, author={Cahová, Hana and J{\"a}schke, Andres}, title={Nucleoside-based diarylethene photoswitches and their facile incorporation into photoswitchable DNA}, year={2013}, pages={3186-3190}, language={eng}, issn={1521-3773}, volume={52}, number={11}, note={Gesehen am 05.02.2021}, journal={Angewandte Chemie}, doi={10.1002/anie.201209943}, } @article{UBHD-67283368, author={Caprioara, Mihaela and J{\"a}schke, Andres}, title={DNA-based phosphane ligands}, year={2007}, pages={2089-2095}, language={eng}, issn={0947-6539}, volume={13}, journal={Chemistry - a European journal}, } @article{UBHD-67284396, author={Chiorcea Paquim, Ana-Maria and Wombacher, Richard and J{\"a}schke, Andres}, title={Atomic force microscopy and anodic voltammetry characterization of a 49-mer Diels-Alderase ribozyme}, year={2006}, pages={8256-8264}, language={eng}, issn={0003-2700}, volume={78}, number={24}, journal={Analytical chemistry}, } @article{UBHD-68873709, author={Craft, Levi Darien and Korza, George and Zhang, Yaqing and Frindert, Jens and J{\"a}schke, Andres and Caimano, Melissa J. and Setlow, Peter}, title={Analysis of 5′-NAD capping of mRNAs in dormant spores of Bacillus subtilis}, year={2020}, pages={1-8}, language={eng}, issn={1574-6968}, volume={367}, note={Gesehen am 03.02.2022}, journal={FEMS microbiology letters}, doi={10.1093/femsle/fnaa143}, } @article{UBHD-68299315, author={Dey, Surjendu and R{\"u}hl, Carmen L. and J{\"a}schke, Andres}, title={Catalysis of Michael additions by covalently modified G-quadruplex DNA}, year={2017}, pages={12162-12170}, language={eng}, issn={1521-3765}, volume={23}, number={50}, note={Gesehen am 22.12.2020 ; Mit Frontispiz}, journal={Chemistry - a European journal}, doi={10.1002/chem.201700632}, } @article{UBHD-68641654, author={Dey, Surjendu and J{\"a}schke, Andres}, title={Covalently functionalized DNA duplexes and quadruplexes as hybrid catalysts in an enantioselective Friedel-Crafts reaction}, year={2020}, language={eng}, issn={1420-3049}, volume={25(2020}, number={14) Artikel-Nummer 3121}, note={Gesehen am 30.09.2020}, journal={Molecules}, doi={10.3390/molecules25143121}, } @article{UBHD-68580289, author={Dey, Surjendu and J{\"a}schke, Andres}, title={Tuning the stereoselectivity of a DNA-catalyzed Michael addition through covalent modification}, year={2015}, pages={11279-11282}, language={eng}, issn={1521-3773}, volume={54}, number={38}, note={Gesehen am 25.05.2020}, journal={Angewandte Chemie}, doi={10.1002/anie.201503838}, } @article{UBHD-68586774, author={Domingo, Olwen Charlotte and Hellmuth, Isabell and J{\"a}schke, Andres and Kreutz, Christoph and Helm, Mark}, title={Intermolecular "cross-torque": the N4-cytosine propargyl residue is rotated to the "CH"-edge as a result of Watson-Crick interaction}, year={2015}, pages={5275-5283}, language={eng}, issn={1362-4962}, volume={43}, number={11}, note={Im Titel ist die Ziffer 4 hochgestellt ; Gesehen am 15.06.2020}, journal={Nucleic acids research}, doi={10.1093/nar/gkv285}, } @article{UBHD-68734701, author={Englert, Daniel and Matveeva, Regina and S{\"u}nb{\"u}l, Murat and Wombacher, Richard and J{\"a}schke, Andres}, title={Aptamer-based proximity labeling guides covalent RNA modification}, year={2021}, pages={3480-3483}, language={eng}, issn={1364-548X}, volume={57}, number={28}, note={Gesehen am 06.05.2021}, journal={Chemical communications}, doi={10.1039/D1CC00786F}, } @article{UBHD-69142753, author={Englert, Daniel and Burger, Eva-Maria and Gr{\"u}n, Franziska and Verma, Mrigank S. and Lackner, Jens and Lampe, Marko and B{\"u}hler, Bastian and Schokolowski, Janin and Nienhaus, G. Ulrich and J{\"a}schke, Andres and S{\"u}nb{\"u}l, Murat}, title={Fast-exchanging spirocyclic rhodamine probes for aptamer-based super-resolution RNA imaging}, year={2023}, pages={1-13}, language={eng}, issn={2041-1723}, volume={14}, number={Artikel-ID 3879}, note={Gesehen am 14.11.2023}, journal={Nature Communications}, doi={10.1038/s41467-023-39611-1}, } @incollection{UBHD-68734709, author={Englert, Daniel and Matveeva, Regina and S{\"u}nb{\"u}l, Murat and Wombacher, Richard and J{\"a}schke, Andres}, title={Supporting information: Aptamer-based proximity labeling guides covalent RNA modification}, year={2021}, pages={49 S.}, language={eng}, note={Gesehen am 06.05.2021}, doi={10.1039/D1CC00786F}, } @book{UBHD-68613648, author={Erfle, Holger and Eils, Roland and J{\"a}schke, Andres and Rohr, Karl and Starkuviene-Erfle, Vytaute and Steinert, Kerstin}, organization={BioQuant / ViroQuant-CellNetworks RNAi Screening Facility and Universit{\"a}t Heidelberg / Institut f{\"u}r Pharmazie und Molekulare Biotechnologie and Qiagen GmbH}, title={RNA-Code - ein systembiologischer Weg zur Analyse der funktionellen Interaktion von proteinkodierenden RNAs und nichtkodierenden RNAs}, subtitle={wissenschaftlicher Schlussbericht 01.09.2014-31.08.2018 : F{\"o}rderprogramm "e:Bio - Innovationswettbewerb Systembiologie" -Modul II(Transfer) - in den Rahmenprogrammen "Gesundheitsforschung" und "Nationale Forschungsstrategie Bio{\"O}konomie 2030"}, publisher={Heidelberg University}, address={Heidelberg}, year={2019}, pages={47, 2 ungez{\"a}hlte Bl{\"a}tter}, language={ger}, note={F{\"o}rderkennzeichen BMBF 031A298 ; Unterschiede zwischen dem gedruckten Dokument und der elektronischen Ressource k{\"o}nnen nicht ausgeschlossen werden}, keywords={RNS / Systembiologie}, } @book{UBHD-68613650, author={Erfle, Holger and Eils, Roland and J{\"a}schke, Andres and Rohr, Karl and Starkuviene-Erfle, Vytaute and Steinert, Kerstin}, organization={BioQuant / ViroQuant-CellNetworks RNAi Screening Facility and Universit{\"a}t Heidelberg / Institut f{\"u}r Pharmazie und Molekulare Biotechnologie and Qiagen GmbH}, title={RNA-Code - ein systembiologischer Weg zur Analyse der funktionellen Interaktion von proteinkodierenden RNAs und nichtkodierenden RNAs}, subtitle={wissenschaftlicher Schlussbericht 01.09.2014-31.08.2018 : F{\"o}rderprogramm "e:Bio - Innovationswettbewerb Systembiologie" -Modul II(Transfer) - in den Rahmenprogrammen "Gesundheitsforschung" und "Nationale Forschungsstrategie Bio{\"O}konomie 2030"}, publisher={Heidelberg University}, address={Heidelberg}, year={2019}, pages={1 Online-Ressource (49 Seiten, 1,65 MB)}, language={ger}, note={F{\"o}rderkennzeichen BMBF 031A298 ; Unterschiede zwischen dem gedruckten Dokument und der elektronischen Ressource k{\"o}nnen nicht ausgeschlossen werden}, doi={10.2314/KXP:1692689339}, keywords={RNS / Systembiologie}, } @incollection{UBHD-67285595, author={Famulok, Michael and J{\"a}schke, Andres and W{\"o}lfl, Stefan}, title={Optimizing structure and function relationship of nucleic acid molecules}, year={1999}, pages={507-527}, language={eng}, isbn={3-7643-5774-6 and 0-8176-5774-6 and 978-3-7643-5774-0 and 978-0-8176-5774-1}, booktitle={Microsystem technology}, editor={K{\"o}hler, Michael and Mejevaia, T. and Saluz, Hans Peter}, } @article{UBHD-67284870, author={Fiammengo, Roberto and Musílek, Kamil and J{\"a}schke, Andres}, title={Efficient preparation of organic substrate-RNA conjugates via in vitro transcription}, year={2005}, pages={9271-9276}, language={eng}, issn={0002-7863}, volume={127}, number={25}, journal={Journal of the American Chemical Society}, } @article{UBHD-67284872, author={Fiammengo, Roberto and J{\"a}schke, Andres}, title={Nucleic acid enzymes}, year={2005}, pages={614–621}, language={eng}, issn={0958-1669}, volume={16}, journal={Current opinion in biotechnology}, } @article{UBHD-67283343, author={Fournier, Pierre and Fiammengo, Roberto and J{\"a}schke, Andres}, title={Allylic amination by a DNA-Diene-Iridium(I) hybrid catalyst}, year={2009}, pages={4426-4429}, language={eng}, issn={1433-7851}, volume={48}, journal={Angewandte Chemie}, } @article{UBHD-67285601, author={Frauendorf, Christian and J{\"a}schke, Andres}, title={Catalysis of organic reactions by RNA}, year={1998}, pages={1378-1381}, language={eng}, issn={1433-7851}, volume={37}, journal={Angewandte Chemie}, } @article{UBHD-67285592, author={Frauendorf, Christian and J{\"a}schke, Andres}, title={Detection of small organic analytes by fluorescing molecular switches}, year={2001}, pages={2521-2524}, language={eng}, issn={0968-0896}, volume={9}, journal={Bioorganic & medicinal chemistry}, } @article{UBHD-67285602, author={Frauendorf, Christian and J{\"a}schke, Andres}, title={Katalyse organischer Reaktionen durch RNA}, year={1998}, pages={1449-1451}, language={ger}, issn={0044-8249}, volume={110}, journal={Angewandte Chemie}, } @article{UBHD-68417547, author={Frindert, Jens and Zhang, Yaqing and N{\"u}bel, Gabriele and Hotz-Wagenblatt, Agnes and Burhenne, J{\"u}rgen and Haefeli, Walter E. and J{\"a}schke, Andres}, title={Identification, biosynthesis, and decapping of NAD-capped RNAs in B. subtilis}, year={2018}, pages={20 S.}, language={eng}, issn={2211-1247}, volume={24}, note={Gesehen am 07.08.2019}, journal={Cell reports}, doi={10.1016/j.celrep.2018.07.047}, } @article{UBHD-68477532, author={Frindert, Jens and Zhang, Yaqing and Ahmed, Yasar Luqman and Sinning, Irmgard and J{\"a}schke, Andres}, title={YvcI from Bacillus subtilis has in vitro RNA pyrophosphohydrolase activity}, year={2019}, pages={19967-19977}, language={eng}, issn={1083-351X}, volume={294}, number={52}, note={Gesehen am 17.01.2020}, journal={The journal of biological chemistry}, doi={10.1074/jbc.RA119.011485}, } @article{UBHD-67283371, author={F{\"u}rtig, Boris and J{\"a}schke, Andres}, title={Review: time-resolved NMR studies of RNA folding}, year={2007}, pages={360-383}, language={eng}, issn={0006-3525}, volume={86}, journal={Biopolymers}, } @article{UBHD-68706916, author={Gaffarogullari, Ece Cazibe and Krause, André and Balbo, Jessica and Herten, Dirk-Peter and J{\"a}schke, Andres}, title={Microscale thermophoresis provides insights into mechanism and thermodynamics of ribozyme catalysis}, year={2013}, pages={1815-1821}, language={eng}, issn={1555-8584}, volume={10}, number={12}, note={Gesehen am 04.03.2021}, journal={RNA biology}, doi={10.4161/rna.27101}, } @article{UBHD-67919300, author={Gaffarogullari, Ece Cazibe and Greulich, Peter and Kobitski, Andrei Yu. and Nienhaus, G. Ulrich and J{\"a}schke, Andres}, title={Unravelling RNA-substrate interactions in a ribozyme-catalysed reaction using fluorescent turn-on probes}, year={2015}, pages={5864-5871}, language={eng}, issn={1521-3765}, volume={21}, number={15}, note={Gesehen am 22.12.2015}, journal={Chemistry - a European journal}, doi={10.1002/chem.201406512}, } @article{UBHD-69191617, author={Gomes-Filho, José Vicente and Breuer, Ruth and Morales-Filloy, Hector Gabriel and Pozhydaieva, Nadiia and Borst, Andreas and Paczia, Nicole and Soppa, J{\"o}rg and H{\"o}fer, Katharina and J{\"a}schke, Andres and Randau, Lennart}, title={Identification of NAD-RNA species and ADPR-RNA decapping in Archaea}, year={2023}, pages={1-12}, language={eng}, issn={2041-1723}, volume={14}, number={Artikel-ID 7597}, note={Gesehen am 13.03.2024}, journal={Nature Communications}, doi={10.1038/s41467-023-43377-x}, } @article{UBHD-69342375, author={Gr{\"u}n, Franziska and Bergh, Niklas van den and Klevanski, Maja and Verma, Mrigank S. and B{\"u}hler, Bastian and Nienhaus, G. Ulrich and Kuner, Thomas and J{\"a}schke, Andres and S{\"u}nb{\"u}l, Murat}, title={Super-resolved protein imaging using bifunctional light-up aptamers}, year={2024}, pages={1-10}, language={eng}, issn={1521-3773}, volume={63}, note={Zuerst ver{\"o}ffentlicht: 08. August 2024 ; Gesehen am 06.05.2025}, journal={Angewandte Chemie}, doi={10.1002/anie.202412810}, } @article{UBHD-68616821, author={Hauenschild, Ralf and Tserovski, Lyudmil and Schmid, Katharina and Th{\"u}ring, Kathrin and Winz, Marie-Luise and Sharma, Sunny and Entian, Karl-Dieter and Wacheul, Ludivine and Lafontaine, Denis L. J. and Anderson, James and Alfonzo, Juan and Hildebrandt, Andreas and J{\"a}schke, Andres and Motorin, Yuri and Helm, Mark}, title={The reverse transcription signature of N-1-methyladenosine in RNA-Seq is sequence dependent}, year={2015}, pages={9950-9964}, language={eng}, issn={1362-4962}, volume={43}, number={20}, note={Gesehen am 14.07.2020}, journal={Nucleic acids research}, doi={10.1093/nar/gkv895}, } @article{UBHD-67285607, author={Hausch, Felix and J{\"a}schke, Andres}, title={Libraries of multifunctional RNA conjugates for the selection of new RNA catalysts}, year={1997}, pages={885-890}, language={eng}, issn={1043-1802}, volume={8}, journal={Bioconjugate chemistry}, } @article{UBHD-67285572, author={Hausch, Felix and J{\"a}schke, Andres}, title={Multifunctional DNA conjugates for the vitro selection of new catalysts}, year={2000}, pages={e35}, language={eng}, issn={0305-1048}, volume={28}, journal={Nucleic acids research}, } @incollection{UBHD-67285589, author={Hausch, Felix and J{\"a}schke, Andres}, title={Multifunctional dinucleotide analogs for the generation of complex RNA conjugates}, year={2001}, pages={1261-1268}, language={eng}, journal={Tetrahedron}, } @article{UBHD-67285604, author={Hausch, Felix and J{\"a}schke, Andres}, title={A novel carboxy-functionalized photocleavable dinucleotide analog for the selection of RNA catalysts}, year={1998}, pages={6157-6158}, language={eng}, issn={0040-4039}, volume={39}, journal={Tetrahedron letters}, } @article{UBHD-68647817, author={Hayden, Steven C. and Bryant, Jonathan and Mackey, Megan A. and H{\"o}fer, Katharina and Lindner, Benjamin and Nguyen, Vanessa P. and J{\"a}schke, Andres and Bunz, Uwe H. F.}, title={Antimicrobial activity of water-soluble triazole phenazine clickamers against E. coli}, year={2014}, pages={719-723}, language={eng}, issn={1521-3765}, volume={20}, number={3}, note={Published online on December 11, 2013 ; Gesehen am 13.10.2020}, journal={Chemistry - a European journal}, doi={10.1002/chem.201303353}, } @article{UBHD-69215335, author={Helm, Mark and Bohnsack, Markus and Carell, Thomas and Dalpke, Alexander and Entian, Karl-Dieter and Ehrenhofer-Murray, Ann and Ficner, Ralf and Hammann, Christian and H{\"o}bartner, Claudia and J{\"a}schke, Andres and Jeltsch, Albert and Kaiser, Stefanie and Klassen, Roland and Leidel, Sebastian A. and Marx, Andreas and M{\"o}rl, Mario and Meier, Jochen C. and Meister, Gunter and Rentmeister, Andrea and Rodnina, Marina and Roignant, Jean-Yves and Schaffrath, Raffael and Stadler, Peter F. and Stafforst, Thorsten}, title={Experience with German Research Consortia in the field of chemical biology of native nucleic acid modifications}, year={2023}, pages={2441-2449}, language={eng}, issn={1554-8937}, volume={18}, number={12}, note={Gesehen am 16.05.2024}, journal={ACS chemical biology}, doi={10.1021/acschembio.3c00586}, } @article{UBHD-67284864, author={Helm, Mark and J{\"a}schke, Andres}, title={Allosterically activated Diels-Alder catalysis by a ribozyme}, year={2005}, pages={10492-10493}, language={eng}, issn={0002-7863}, volume={127}, number={30}, journal={Journal of the American Chemical Society}, } @article{UBHD-69313245, author={Hendrich, Christoph and Reinschmidt, Martin and B{\"u}llmann, Simon and Kolmar, Theresa and J{\"a}schke, Andres}, title={Synthesis and development of inverse-type nucleoside diarylethene photoswitches}, year={2024}, pages={e202401537-1-e202401537-9}, language={eng}, issn={1521-3765}, volume={30}, note={Gesehen am 27.02.2025}, journal={Chemistry - a European journal}, doi={10.1002/chem.202401537}, } @article{UBHD-68496702, author={H{\"o}fer, Katharina and J{\"a}schke, Andres}, title={Epitranscriptomics}, subtitle={RNA Modifications in Bacteria and Archaea}, year={2018}, pages={22 S.}, language={eng}, issn={2165-0497}, volume={4(2016}, note={Gesehen am 04.03.2020}, journal={Microbiology spectrum}, doi={10.1128/microbiolspec.RWR-0015-2017}, } @article{UBHD-68496699, author={H{\"o}fer, Katharina and J{\"a}schke, Andres}, title={NAD-modifizierte RNA}, subtitle={Redox-biochemie trifft RNA-Prozessierung}, year={2018}, pages={680-683}, language={eng}, issn={1868-6249}, volume={24}, number={7}, note={Gesehen am 04.03.2020}, journal={Biospektrum}, doi={10.1007/s12268-018-0980-z}, } @article{UBHD-68021245, author={H{\"o}fer, Katharina and Abele, Florian and Frindert, Jens and J{\"a}schke, Andres}, title={Structure and function of the bacterial decapping enzyme NudC}, year={2016}, pages={730-734}, language={eng}, issn={1552-4469}, volume={12}, number={9}, note={Gesehen am 24.08.2016}, journal={Nature chemical biology}, doi={10.1038/nchembio.2132}, } @article{UBHD-68576908, author={H{\"o}fer, Katharina and Abele, Florian and Schlotthauer, Jasmin and J{\"a}schke, Andres}, title={Synthesis of 5′-NAD-capped RNA}, year={2016}, pages={874-877}, language={eng}, issn={1520-4812}, volume={27}, number={4}, note={Gesehen am 14.05.2020}, journal={Bioconjugate chemistry}, doi={10.1021/acs.bioconjchem.6b00072}, } @article{UBHD-68756047, author={H{\"o}fer, Katharina and Langej{\"u}rgen, Lisa V. and J{\"a}schke, Andres}, title={Universal aptamer-based real-time monitoring of enzymatic RNA synthesis}, year={2013}, pages={13692-13694}, language={eng}, issn={1520-5126}, volume={135}, number={37}, note={Gesehen am 05.07.2021}, journal={Journal of the American Chemical Society}, doi={10.1021/ja407142f}, } @article{UBHD-67285594, author={J{\"a}schke, Andres}, title={Artificial ribozymes and deoxyribozymes}, year={2001}, pages={321-326}, language={eng}, issn={0959-440X}, volume={11}, journal={Current opinion in structural biology}, } @article{UBHD-68572306, author={J{\"a}schke, Andres and H{\"o}fer, Katharina and N{\"u}bel, Gabriele and Frindert, Jens}, title={Cap-like structures in bacterial RNA and epitranscriptomic modification}, year={2016}, pages={44-49}, language={eng}, issn={1879-0364}, volume={30}, note={Gesehen am 30.04.2020}, journal={Current opinion in microbiology}, doi={10.1016/j.mib.2015.12.009}, } @incollection{UBHD-67285600, author={J{\"a}schke, Andres}, title={Catalysis of organic reactions by RNA}, subtitle={strategies for the selection of catalytic RNAs}, year={1998}, pages={179-190}, language={eng}, isbn={0-12-233210-5 and 978-0-12-233210-4}, booktitle={The many faces of RNA}, editor={Eggleston, Drake S.}, } @incollection{UBHD-67282743, author={J{\"a}schke, Andres}, title={Chemical reactions with RNA and DNA enzymes}, year={2010}, pages={377-396}, language={eng}, isbn={978-0-470-99807-6 and 0-470-99807-5}, booktitle={Molecular encapsulation}, editor={Brinker, Udo H.}, } @article{UBHD-67285565, author={J{\"a}schke, Andres and Seelig, Burckhard}, title={Evolution of DNA and RNA as catalysts for chemical reactions}, year={2000}, pages={257-262}, language={eng}, issn={0959-440X}, volume={4}, journal={Current opinion in structural biology}, } @article{UBHD-68264802, author={J{\"a}schke, Andres}, title={Genetically encoded RNA photoswitches as tools for the control of gene expression}, year={2012}, pages={2106-2111}, language={eng}, issn={1873-3468}, volume={586}, number={15}, note={Available online 31 May 2012 ; First published: 31 May 2012 ; Gesehen am 25.06.2018}, journal={FEBS letters}, doi={10.1016/j.febslet.2012.05.040}, } @article{UBHD-67282107, author={J{\"a}schke, Andres}, title={Genetically encoded RNA photoswitches as tools for the control of gene expression}, year={2012}, pages={2106-2111}, language={eng}, issn={0014-5793}, volume={586}, number={15}, journal={FEBS letters}, } @article{UBHD-67285599, author={J{\"a}schke, Andres and Frauendorf, Christian and Hausch, Felix}, title={In vitro selected oligonucleotides as tools in organic chemistry}, year={1999}, pages={825-833}, language={eng}, issn={0936-5214}, volume={6}, journal={Synlett}, } @incollection{UBHD-67284876, author={J{\"a}schke, Andres}, title={In vitro selection from combinatorial nucleic acid libraries}, subtitle={Andres J{\"a}schke}, year={2005}, pages={379-390}, language={eng}, isbn={1-58829-233-9 and 978-1-58829-233-9}, booktitle={Oligonucleotide synthesis}, editor={Herdewijn, Piet}, } @incollection{UBHD-67285606, author={J{\"a}schke, Andres}, title={Oligonucleotide-poly(ethylene glycol) conjugates-synthesis}, subtitle={characterization and applications}, year={1997}, pages={265-283}, language={eng}, isbn={0-8412-3537-6 and 978-0-8412-3537-3}, booktitle={Poly(ethylene glycol)}, editor={Harris, J. M.}, } @book{UBHD-67282085, author={J{\"a}schke, Andres}, title={Oligonukleotid-Polyethylenglycol-Konjugate}, subtitle={Synthese, Charakterisierung und Anwendungen}, year={1993}, pages={113, VII S.}, language={ger}, school={Berlin, Humboldt-Univ., Diss., 1993}, } @article{UBHD-67284899, author={J{\"a}schke, Andres and Wombacher, Richard}, title={Ribozyme-catalysed carbon-carbon bond formation}, year={2002}, pages={1137-1140}, language={eng}, issn={0300-5127}, volume={30}, journal={Biochemical Society transactions}, } @incollection{UBHD-67282742, author={J{\"a}schke, Andres}, title={RNA as a catalyst}, subtitle={the Diels-Alderase ribozyme}, year={2010}, pages={339-354}, language={eng}, isbn={978-0-470-51974-5 and 0-470-51974-6}, booktitle={The chemical biology of nucleic acids}, editor={Mayer, G{\"u}nter}, } @article{UBHD-67285593, author={J{\"a}schke, Andres}, title={RNA-catalyzed carbon-carbon bond formation}, year={2001}, pages={1321-1325}, language={eng}, issn={1431-6730 and 1432-0355}, volume={382}, number={9}, journal={Biological chemistry}, } @article{UBHD-67284885, author={J{\"a}schke, Andres and Helm, Mark}, title={RNA sex}, year={2003}, pages={1148-1150}, language={eng}, issn={1074-5521}, volume={10}, journal={Chemistry & biology}, } @incollection{UBHD-67837683, author={J{\"a}schke, Andres}, title={Selective hybrid catalysts based on nucleic acids}, year={2014}, pages={377-392}, language={eng}, isbn={3-527-33521-8 and 978-3-527-33521-3}, booktitle={Molecular catalysts}, editor={Gade, Lutz H. and Hofmann, Peter}, } @incollection{UBHD-67837026, author={J{\"a}schke, Andres}, title={Selective hybrid catalysts based on nucleic acids}, year={2014}, pages={377-392}, language={eng}, isbn={978-3-527-33521-3}, note={Gesehen am 29.06.2015}, booktitle={Molecular catalysts}, editor={Gade, Lutz H. and Hofmann, Peter}, doi={10.1002/9783527673278.ch18}, } @incollection{UBHD-67837685, author={J{\"a}schke, Andres}, title={Structures and mechanisms in biological systems}, year={2014}, pages={343-346}, language={eng}, isbn={3-527-33521-8 and 978-3-527-33521-3}, booktitle={Molecular catalysts}, editor={Gade, Lutz H. and Hofmann, Peter}, } @incollection{UBHD-67837024, author={J{\"a}schke, Andres}, title={Structures and mechanisms in biological systems}, year={2014}, pages={343-346}, language={eng}, isbn={978-3-527-33521-3}, note={Gesehen am 29.06.2015}, booktitle={Molecular catalysts}, editor={Gade, Lutz H. and Hofmann, Peter}, doi={10.1002/9783527673278.part4}, } @article{UBHD-67284873, author={Keiper, Sonja and J{\"a}schke, Andres}, title={Architecture of a Diels-Alderase ribozyme with a preformed catalytic pocket}, year={2004}, pages={1217-1227}, language={eng}, issn={1074-5521}, volume={11}, journal={Chemistry & biology}, } @incollection{UBHD-67284874, author={Keiper, Sonja and J{\"a}schke, Andres}, title={RNA as a catalyst}, subtitle={the Diels-Alderase-Ribozyme}, year={2004}, pages={422-433}, language={eng}, isbn={3-527-30656-0 and 978-3-527-30656-5}, booktitle={Highlights in bioorganic chemistry}, editor={Schmuck, Carsten}, } @incollection{UBHD-67284875, author={Keiper, Sonja and J{\"a}schke, Andres}, title={SELEX}, subtitle={systematic evolution of ligands by exponential enrichment}, year={2004}, pages={433-435}, language={eng}, isbn={3-527-30656-0 and 978-3-527-30656-5}, booktitle={Highlights in bioorganic chemistry}, editor={Schmuck, Carsten}, } @article{UBHD-67818506, author={Keller, Bettina G. and J{\"a}schke, Andres and Nienhaus, G. Ulrich}, title={Complex RNA folding kinetics revealed by single-molecule FRET and hidden Markov models}, year={2014}, pages={4534-4543}, language={eng}, issn={1520-5126}, volume={136}, number={12}, note={Gesehen am 15.05.2015}, journal={Journal of the American Chemical Society}, doi={10.1021/ja4098719}, } @article{UBHD-68407431, author={Kellis, Donald L. and Sarter, Christopher and Cannon, Brittany L. and Davis, Paul H. and Graugnard, Elton and Lee, Jeunghoon and Pensack, Ryan D. and Kolmar, Theresa and J{\"a}schke, Andres and Yurke, Bernard and Knowlton, William B.}, title={An all-optical excitonic switch operated in the liquid and solid phases}, year={2019}, pages={2986-2994}, language={eng}, issn={1936-086X}, volume={13}, number={3}, note={Gesehen am 11.07.2019}, journal={ACS nano}, doi={10.1021/acsnano.8b07504}, } @article{UBHD-67283373, author={Kisseleva, Natalia and Kraut, Stefanie and J{\"a}schke, Andres}, title={Characterizing multiple metal ion binding sites within a ribozyme by cadmium-induced EPR silencing}, year={2007}, pages={127-136}, language={eng}, issn={1955-2068}, volume={1}, journal={HFSP journal}, } @article{UBHD-67283349, author={Kobitski, Andrei Yu. and J{\"a}schke, Andres}, title={Exploring the folding free energy landscape of small RNA molecules by single-pair F{\"o}rster resonance energy transfer}, year={2008}, pages={439-457}, language={eng}, issn={1793-0480}, volume={3}, number={4}, journal={Biophysical reviews and letters}, } @article{UBHD-67283364, author={Kobitski, Andrei Yu. and J{\"a}schke, Andres}, title={Mg2+-dependent folding of a Diels-Alderase ribozyme probed by single-molecule FRET analysis}, year={2007}, pages={2047-2059}, language={eng}, issn={0305-1048}, volume={35}, number={4}, journal={Nucleic acids research}, } @article{UBHD-67818494, author={Kobitski, Andrei Yu. and J{\"a}schke, Andres and Nienhaus, G. Ulrich}, title={Single-molecule FRET studies of RNA folding}, subtitle={a diels-alderase ribozyme with photolabile nucleotide modifications}, year={2013}, pages={12800-12806}, language={eng}, issn={1520-5207}, volume={117}, number={42}, note={Gesehen am 15.05.2015}, journal={The journal of physical chemistry}, doi={10.1021/jp402005m}, } @article{UBHD-69056024, author={Kolmar, Theresa and Becker, Antonia and Pfretzschner, Ronja A. and Lelke, Alina and J{\"a}schke, Andres}, title={Development of red-shifted and fluorogenic nucleoside and oligonucleotide diarylethene photoswitches}, year={2021}, pages={17386-17394}, language={eng}, issn={1521-3765}, volume={27}, number={69}, note={Gesehen am 27.03.2023}, journal={Chemistry - a European journal}, doi={10.1002/chem.202103133}, url={https://doi.org/10.1002/chem.202103133}, library={UB}, } @article{UBHD-69067574, author={Kolmar, Theresa and B{\"u}llmann, Simon and Sarter, Christopher and H{\"o}fer, Katharina and J{\"a}schke, Andres}, title={Development of High-Performance pyrimidine nucleoside and oligonucleotide diarylethene photoswitches}, year={2021}, pages={8164-8173}, language={eng}, issn={1521-3773}, volume={60}, number={15}, note={Gesehen am 20.04.2023}, journal={Angewandte Chemie}, doi={10.1002/anie.202014878}, url={https://doi.org/10.1002/anie.202014878}, library={UB}, } @article{UBHD-69067576, author={Kolmar, Theresa and B{\"u}llmann, Simon and Sarter, Christopher and H{\"o}fer, Katharina and J{\"a}schke, Andres}, title={Development of high-performance pyrimidine nucleoside and oligonucleotide diarylethene photoswitches}, year={2021}, pages={8245-8254}, language={eng}, issn={1521-3757}, volume={133}, number={15}, note={Gesehen am 20.04.2023}, journal={Angewandte Chemie}, doi={10.1002/ange.202014878}, url={https://doi.org/10.1002/ange.202014878}, library={UB}, } @article{UBHD-68653375, author={Krause, André and Muttach, Fabian and J{\"a}schke, Andres}, title={Phosphine-free Stille-Migita chemistry for the mild and orthogonal modification of DNA and RNA}, year={2014}, pages={16613-16619}, language={eng}, issn={1521-3765}, volume={20}, number={50}, note={Gesehen am 23.10.2020}, journal={Chemistry - a European journal}, doi={10.1002/chem.201404843}, } @article{UBHD-68329790, author={Kraut, Stefanie and Bebenroth, Dirk and Nierth, Alexander and J{\"a}schke, Andres}, title={Three critical hydrogen bonds determine the catalytic activity of the Diels-Alderase ribozyme}, year={2012}, pages={1318-1330}, language={eng}, issn={1362-4962}, volume={40}, number={3}, note={Published online 5 October 2011 ; Gesehen am 19.11.2018}, journal={Nucleic acids research}, doi={10.1093/nar/gkr812}, } @article{UBHD-67282676, author={Kraut, Stefanie and J{\"a}schke, Andres}, title={Three critical hydrogen bonds determine the catalytic activity of the Diels–Alderase ribozyme}, year={2012}, pages={1318-1330}, language={eng}, issn={0305-1048}, volume={40}, number={3}, journal={Nucleic acids research}, } @article{UBHD-68487496, author={Li, Yang and Pérez Lustres, José Luis and Volpp, Hans-Robert and Buckup, Tiago and Kolmar, Theresa and J{\"a}schke, Andres and Motzkus, Marcus}, title={Ultrafast ring closing of a diarylethene-based photoswitchable nucleoside}, year={2018}, pages={22867-22876}, language={eng}, issn={1463-9084}, volume={20}, number={35}, note={Gesehen am 11.02.2020}, journal={Physical chemistry, chemical physics}, doi={10.1039/C8CP03549K}, } @article{UBHD-68963693, author={L{\"o}cherer, Christian and Tosun, Elif and Backes, Hannah and J{\"a}schke, Andres}, title={Thiophosphate analogs of coenzyme A and its precursors}, subtitle={synthesis, stability, and biomimetic potential}, year={2022}, pages={1-9}, language={eng}, issn={2218-273X}, volume={12}, note={Gesehen am 13.09.2022}, journal={Biomolecules}, doi={10.3390/biom12081065}, } @article{UBHD-67283345, author={Manoharan, Vijayalaxmi and J{\"a}schke, Andres}, title={Metal-induced folding of Diels-Alderase ribozymes studied by static and time-resolved NMR spectroscopy}, year={2009}, pages={6261-6270}, language={eng}, issn={0002-7863}, volume={131}, journal={Journal of the American Chemical Society}, } @article{UBHD-68439610, author={Manz, Christoph and Kobitski, Andrei Yu. and Samanta, Ayan and J{\"a}schke, Andres and Nienhaus, G. Ulrich}, title={The multi-state energy landscape of the SAM-I riboswitch}, subtitle={a single-molecule F{\"o}rster resonance energy transfer spectroscopy study}, year={2018}, pages={1-10}, language={eng}, issn={1089-7690}, volume={148}, note={Gesehen am 11.10.2019}, journal={The journal of chemical physics}, doi={10.1063/1.5003783}, } @article{UBHD-68179190, author={Manz, Christoph and Samanta, Ayan and J{\"a}schke, Andres and Nienhaus, G. Ulrich}, title={Single-molecule FRET reveals the energy landscape of the full-length SAM-I riboswitch}, year={2017}, pages={?}, language={eng}, issn={1552-4469}, note={Gesehen am 16.10.2017}, journal={Nature chemical biology}, doi={10.1038/nchembio.2476}, } @article{UBHD-68632299, author={Milosch, Nelli and Tanri{\"o}ver, G. and Kundu, A. and Rami, A. and François, J.-C. and Baumk{\"o}tter, F. and Weyer, Sascha W. and Samanta, A. and J{\"a}schke, Andres and Brod, F. and Buchholz, C. J. and Kins, S. and Behl, C. and M{\"u}ller, Ulrike C. and K{\"o}gel, D.}, title={Holo-APP and G-protein-mediated signaling are required for sAPP α -induced activation of the akt survival pathway}, year={2014}, pages={14 S.}, language={eng}, issn={2041-4889}, volume={5(2014}, note={Gesehen am 28.08.2020}, journal={Cell death & disease}, doi={10.1038/cddis.2014.352}, } @article{UBHD-69166787, author={M{\"o}hler, Marvin and J{\"a}schke, Andres}, title={Future perspectives for the identification and sequencing of nicotinamide adenine dinucleotide-capped RNAs}, year={2023}, pages={3000-3009}, language={eng}, issn={1520-4898}, volume={56}, note={Gesehen am 29.01.2024}, journal={Accounts of chemical research}, doi={10.1021/acs.accounts.3c00446}, } @article{UBHD-68683155, author={M{\"o}hler, Marvin and H{\"o}fer, Katharina and J{\"a}schke, Andres}, title={Synthesis of 5'-thiamine-capped RNA}, year={2020}, pages={16 S.}, language={eng}, issn={1420-3049}, volume={25(2020}, note={Gesehen am 25.01.2021}, journal={Molecules}, doi={10.3390/molecules25235492}, } @article{UBHD-68564373, author={Morales-Filloy, Hector Gabriel and Zhang, Yaqing and N{\"u}bel, Gabriele and George, Shilpa Elizabeth and Korn, Natalya and Wolz, Christiane and J{\"a}schke, Andres}, title={The 5′ NAD cap of RNAIII modulates toxin production in staphylococcus aureus isolates}, year={2020}, pages={20 S.}, language={eng}, issn={1098-5530}, volume={202(2020}, note={Gesehen am 15.04.2020}, journal={Journal of bacteriology}, doi={10.1128/JB.00591-19}, } @article{UBHD-69076896, author={Nierth, Alexander and Kobitski, Andrei Yu. and Nienhaus, G. Ulrich and J{\"a}schke, Andres}, title={Anthracene−BODIPY dyads as fluorescent sensors for biocatalytic Diels−Alder reactions}, year={2010}, pages={2646-2654}, language={eng}, issn={1520-5126}, volume={132}, number={8}, note={Gesehen am 17.05.2023}, journal={Journal of the American Chemical Society}, doi={10.1021/ja9084397}, } @article{UBHD-67283336, author={Nierth, Alexander and J{\"a}schke, Andres}, title={Anthracene-BODIPY dyads as fluorescent sensors for biocatalytic Diels-Alder reactions}, subtitle={Alexander Nierth ... Andres J{\"a}schke}, year={2010}, pages={2646-2654}, language={eng}, issn={0002-7863}, volume={132}, journal={Journal of the American Chemical Society}, } @article{UBHD-67283338, author={Nierth, Alexander and Singer, Marco and J{\"a}schke, Andres}, title={Efficient photoactivation of a Diels-Alderase ribozyme}, year={2010}, pages={7975-7977}, language={eng}, issn={0022-4936 and 0009-241X and 1359-7345}, volume={46}, number={42}, journal={Chemical communications}, } @article{UBHD-69076899, author={Nierth, Alexander and Singer, Marco and J{\"a}schke, Andres}, title={Efficient photoactivation of a Diels-Alderase ribozyme}, year={2010}, pages={7975-7977}, language={eng}, issn={1364-548X}, volume={46}, number={42}, note={Gesehen am 17.05.2023}, journal={Chemical communications}, doi={10.1039/C0CC03162C}, } @article{UBHD-67282688, author={Nierth, Alexander and J{\"a}schke, Andres}, title={Radioactive phosphorylation of alcohols to monitor biocatalytic Diels-Alder reactions}, year={2011}, pages={7 S.}, language={eng}, issn={1932-6203}, volume={6(2011}, journal={PLOS ONE}, doi={10.1371/journal.pone.0021391}, } @article{UBHD-68291210, author={N{\"u}bel, Gabriele and Sorgenfrei, Frieda A. and J{\"a}schke, Andres}, title={Boronate affinity electrophoresis for the purification and analysis of cofactor-modified RNAs}, year={2017}, pages={14-20}, language={eng}, issn={1095-9130}, volume={117}, note={Available online 16 September 2016 ; Gesehen am 01.08.2018}, journal={Methods}, doi={10.1016/j.ymeth.2016.09.008}, } @incollection{UBHD-67283347, author={Petermeier, Markus Johannes and J{\"a}schke, Andres}, title={New theophylline-activated Diels-Alderase ribozymes by molecular engineering}, year={2009}, pages={288-292}, language={eng}, journal={Organic & biomolecular chemistry}, } @article{UBHD-67283366, author={Pfander, Stephanie and J{\"a}schke, Andres}, title={Reversible site-specific tagging of enzymatically synthesized RNAs using aldehyde–hydrazine chemistry and protease-cleavable linkers}, year={2007}, pages={e25}, language={eng}, issn={0305-1048}, volume={35}, journal={Nucleic acids research}, } @book{UBHD-68567894, editor={S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, title={Proximity labeling}, subtitle={methods and protocols}, publisher={Humana}, address={New York, NY}, year={2019}, pages={1 Online-Ressource (X, 231 p. 74 illus., 46 illus. in color)}, language={eng}, isbn={978-1-4939-9537-0}, number={ARRAY(0x56118301c0a8)}, series={Methods in molecular biology}, doi={10.1007/978-1-4939-9537-0}, } @book{UBHD-68567896, editor={S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, title={Proximity labeling}, subtitle={methods and protocols}, publisher={Humana Press}, address={New York, NY}, year={2019}, pages={x, 231 Seiten}, language={eng}, isbn={978-1-4939-9536-3}, number={ARRAY(0x561182f455e0)}, series={Methods in molecular biology}, } @article{UBHD-68010292, author={Redaelli, Chiara and Gaffarogullari, Ece Cazibe and Brune, Maik and J{\"a}schke, Andres and Wick, Wolfgang and Platten, Michael and Lanz, Tobias}, title={Toxicity of teriflunomide in aryl hydrocarbon receptor deficient mice}, year={2015}, pages={484-492}, language={eng}, issn={1873-2968}, volume={98}, number={3}, note={Gesehen am 22.07.2016}, journal={Biochemical pharmacology}, doi={10.1016/j.bcp.2015.08.111}, } @article{UBHD-68646659, author={Samanta, Ayan and Krause, André and J{\"a}schke, Andres}, title={A modified dinucleotide for site-specific RNA-labelling by transcription priming and click chemistry}, year={2014}, pages={1313-1316}, language={eng}, issn={1364-548X}, volume={50}, number={11}, note={ First published 17 Oct 2013 ; Gesehen am 09.10.2020}, journal={Chemical communications}, doi={10.1039/C3CC46132G}, } @article{UBHD-68575762, author={Sarter, Christopher and Heimes, Michael and J{\"a}schke, Andres}, title={The role of alkyl substituents in deazaadenine-based diarylethene photoswitches}, year={2016}, pages={1103-1110}, language={eng}, issn={1860-5397}, volume={12}, note={Gesehen am 12.05.2020}, journal={Beilstein journal of organic chemistry}, doi={10.3762/bjoc.12.106}, } @article{UBHD-67284884, author={Schlatterer, J{\"o}rg C. and Stuhlmann, Friedrich and J{\"a}schke, Andres}, title={Stereoselective synthesis using immobilized Diels-Alderase ribozymes}, year={2003}, pages={1089-1092}, language={eng}, issn={1439-4227}, volume={4}, journal={ChemBioChem}, } @article{UBHD-67284397, author={Schlatterer, J{\"o}rg C. and J{\"a}schke, Andres}, title={Universal initiator nucleotides for the enzymatic synthesis of 50-amino- and 50-thiol-modified RNA}, year={2006}, pages={887-892}, language={eng}, issn={0006-291X}, volume={344}, journal={Biochemical and biophysical research communications}, } @article{UBHD-67282695, author={Schoch, Juliane and Ameta, Sandeep and J{\"a}schke, Andres}, title={Inverse electron-demand Diels-Alder reactions for the selective and efficient labeling of RNA}, year={2011}, pages={12536-12537}, language={eng}, issn={0022-4936 and 0009-241x and 1359-7345}, volume={47}, journal={Chemical communications}, } @article{UBHD-68978022, author={Schoch, Juliane and Ameta, Sandeep and J{\"a}schke, Andres}, title={Inverse electron-demand Diels-Alder reactions for the selective and efficient labeling of RNA}, year={2011}, pages={12536-12537}, language={eng}, issn={1364-548X}, volume={47}, number={46}, note={Gesehen am 25.10.2022}, journal={Chemical communications}, doi={10.1039/C1CC15476A}, } @article{UBHD-69090271, author={Schoch, Juliane and Wießler, Manfred and J{\"a}schke, Andres}, title={Post-synthetic modification of DNA by inverse-electron-demand Diels-Alder reaction}, year={2010}, pages={8846-8847}, language={eng}, issn={1520-5126}, volume={132}, number={26}, note={Gesehen am 27.06.2023}, journal={Journal of the American Chemical Society}, doi={10.1021/ja102871p}, } @article{UBHD-67282740, author={Schoch, Juliane and Wießler, Manfred and J{\"a}schke, Andres}, title={Post-synthetic modification of DNA by inverse-electron-demand Diels-Alder reaction}, year={2010}, pages={8846-8847}, language={eng}, issn={0002-7863}, volume={132}, journal={Journal of the American Chemical Society}, } @article{UBHD-68282779, author={Schoch, Juliane and Staudt, Markus and Samanta, Ayan and Wießler, Manfred and J{\"a}schke, Andres}, title={Site-specific one-pot dual labeling of DNA by orthogonal cycloaddition chemistry}, year={2012}, pages={1382-1386}, language={eng}, issn={1520-4812}, volume={23}, number={7}, note={Gesehen am 05.07.2018}, journal={Bioconjugate chemistry}, doi={10.1021/bc300181n}, } @article{UBHD-67282681, author={Schoch, Juliane and Samanta, Ayan and J{\"a}schke, Andres}, title={Site-specific one-pot dual labeling of DNA by orthogonal cycloaddition chemistry}, year={2012}, pages={1382–1386}, language={eng}, issn={1043-1802}, volume={23}, number={7}, journal={Bioconjugate chemistry}, } @article{UBHD-68760373, author={Schoch, Juliane and J{\"a}schke, Andres}, title={Synthesis and enzymatic incorporation of norbornene-modified nucleoside triphosphates for Diels-Alder bioconjugation}, year={2013}, pages={4181-4183}, language={eng}, issn={2046-2069}, volume={3}, number={13}, note={Gesehen am 15.07.2021}, journal={RSC Advances}, doi={10.1039/C3RA40373D}, } @article{UBHD-67285584, author={Seelig, Burckhard and J{\"a}schke, Andres}, title={Enantioselective ribozyme catalysis of a bimolecular cycloaddition reaction}, year={2000}, pages={4576-4579}, language={eng}, issn={1433-7851}, volume={39}, number={24}, journal={Angewandte Chemie}, } @article{UBHD-67285605, author={Seelig, Burckhard and J{\"a}schke, Andres}, title={Site-specific modification of enzymatically synthesized RNA}, subtitle={transcription initiation and Diels-Alder reaction}, year={1997}, pages={7729-7732}, language={eng}, issn={0040-4039}, volume={38}, journal={Tetrahedron letters}, } @article{UBHD-67285598, author={Seelig, Burckhard and J{\"a}schke, Andres}, title={A small catalytic RNA motif with Diels-Alderase activity}, year={1999}, pages={167-176}, language={eng}, issn={1074-5521}, volume={6}, journal={Chemistry & biology}, } @article{UBHD-67285597, author={Seelig, Burckhard and J{\"a}schke, Andres}, title={Ternary conjugates of guanosine monophosphate as initiator nucleotides for the enzymatic synthesis of 5’-modified RNAs}, year={1999}, pages={371-378}, language={eng}, issn={1043-1802}, volume={10}, journal={Bioconjugate chemistry}, } @article{UBHD-67285574, author={Sengle, Gerhard and J{\"a}schke, Andres}, title={Synthesis, incorporation efficiency, and stability of disulfide bridged functional groups at RNA 5'-ends}, year={2000}, pages={1317-1329}, language={eng}, issn={0968-0896}, volume={8}, number={6}, journal={Bioorganic & medicinal chemistry}, } @article{UBHD-67284859, author={Serganov, Alexander A. and Wombacher, Richard and J{\"a}schke, Andres}, title={Structural basis for Diels-Alder ribozyme-catalyzed carbon-carbon bound formation}, year={2005}, pages={218-224}, language={eng}, issn={1545-9993}, volume={12}, journal={Nature structural & molecular biology}, } @article{UBHD-68873413, author={Singer, Marco and Nierth, Alexander and J{\"a}schke, Andres}, title={Photochromism of diarylethene-functionalized 7-deazaguanosines}, year={2013}, pages={2766-2769}, language={eng}, issn={1099-0690}, volume={2013}, number={14}, note={First published: 15 April 2013 ; Gesehen am 02.02.2022}, journal={European journal of organic chemistry}, doi={10.1002/ejoc.201300261}, } @article{UBHD-67282741, author={Singer, Marco and J{\"a}schke, Andres}, title={Reversibly photoswitchable nucleosides}, subtitle={synthesis and photochromic properties of diarylethene-functionalized 7-deazaadenosine derivatives}, year={2010}, pages={8372-8377}, language={eng}, issn={0002-7863}, volume={132}, journal={Journal of the American Chemical Society}, } @article{UBHD-67282678, author={Strauß, Benjamin and J{\"a}schke, Andres}, title={Direct structural analysis of modified RNA by fluorescent in-line probing}, year={2012}, pages={861-870}, language={eng}, issn={0305-1048}, volume={40}, number={2}, journal={Nucleic acids research}, } @article{UBHD-68249289, author={Strauß, Benjamin and Nierth, Alexander and Singer, Marco and J{\"a}schke, Andres}, title={Direct structural analysis of modified RNA by fluorescent in-line probing}, year={2012}, pages={861-870}, language={eng}, issn={1362-4962}, volume={40}, number={2}, note={Published online 14 September 2011 ; Gesehen am 26.08.2020}, journal={Nucleic acids research}, doi={10.1093/nar/gkr733}, } @article{UBHD-67284886, author={Stuhlmann, Friedrich and J{\"a}schke, Andres}, title={Characterization of an RNA active site}, subtitle={interactions between a Diels-Alderase ribozyme and its substrates and products}, year={2002}, pages={3238-3244}, language={eng}, issn={0002-7863}, volume={124}, journal={Journal of the American Chemical Society}, } @article{UBHD-68871336, author={S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, title={Contact-mediated quenching for RNA imaging in bacteria with a fluorophore-binding aptamer}, year={2013}, pages={13401-13404}, language={eng}, issn={1521-3773}, volume={52}, number={50}, note={Gesehen am 27.01.2022}, journal={Angewandte Chemie}, doi={10.1002/anie.201306622}, } @incollection{UBHD-68564992, author={S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, title={Proximity-driven site-specific and covalent labeling of proteins with a TexasRed fluorophore Reacting (ReacTR) Peptide Tag}, year={2019}, pages={179-190}, language={eng}, isbn={978-1-4939-9537-0}, note={Gesehen am 16.04.2020}, booktitle={Proximity labeling}, editor={S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, doi={10.1007/978-1-4939-9537-0_14}, } @article{UBHD-68591174, author={S{\"u}nb{\"u}l, Murat and Nacheva, Lora and J{\"a}schke, Andres}, title={Proximity-induced covalent labeling of proteins with a reactive fluorophore-binding peptide tag}, year={2015}, pages={1466-1469}, language={eng}, issn={1520-4812}, volume={26}, number={8}, note={Gesehen am 25.06.2020}, journal={Bioconjugate chemistry}, doi={10.1021/acs.bioconjchem.5b00304}, } @article{UBHD-68383285, author={S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, title={SRB-2}, subtitle={a promiscuous rainbow aptamer for live-cell RNA imaging}, year={2018}, pages={10 S.}, language={eng}, issn={1362-4962}, volume={46(2018}, note={Gesehen am 29.04.2019}, journal={Nucleic acids research}, doi={10.1093/nar/gky543}, } @article{UBHD-68704431, author={S{\"u}nb{\"u}l, Murat and Lackner, Jens and Martin, Annabell and Englert, Daniel and Hacene, Benjamin and Gr{\"u}n, Franziska and Nienhaus, Karin and Nienhaus, G. Ulrich and J{\"a}schke, Andres}, title={Super-resolution RNA imaging using a rhodamine-binding aptamer with fast exchange kinetics}, year={2021}, pages={686-690}, language={eng}, issn={1546-1696}, volume={39}, note={Das PDF enth{\"a}lt zus{\"a}tzlich einen Anhang von 8 Seiten ; Gesehen am 26.02.2021}, journal={Nature biotechnology}, doi={10.1038/s41587-020-00794-3}, } @incollection{UBHD-68383275, author={S{\"u}nb{\"u}l, Murat and Arora, Ankita and J{\"a}schke, Andres}, title={Visualizing RNA in live bacterial cells using fluorophore- and quencher-binding aptamers}, year={2018}, pages={289-304}, language={eng}, isbn={978-1-4939-7213-5}, note={Gesehen am 29.04.2019}, booktitle={RNA Detection}, doi={10.1007/978-1-4939-7213-5_19}, } @article{UBHD-69114567, author={Su, Meng and Schmitt, Christian and Liu, Ziwei and Roberts, Samuel J. and Liu, Kim C. and R{\"o}der, Konstantin and J{\"a}schke, Andres and Wales, David J. and Sutherland, John D.}, title={Triplet-encoded prebiotic RNA aminoacylation}, year={2023}, pages={15971-15980}, language={eng}, issn={1520-5126}, volume={145}, number={29 vom: Juli}, note={Online verf{\"u}gbar: 12. Juli 2023 ; Gesehen am 21.08.2023}, journal={Journal of the American Chemical Society}, doi={10.1021/jacs.3c03931}, } @article{UBHD-68275365, author={Wahl, Florentine and J{\"a}schke, Andres}, title={PEG-tethered guanosine acetal conjugates for the enzymatic synthesis of modified RNA}, year={2012}, pages={1224-1226}, language={eng}, issn={0006-291X}, volume={417}, number={4}, note={Available online 2 January 2012 ; Gesehen am 28.06.2018}, journal={Biochemical and biophysical research communications}, doi={10.1016/j.bbrc.2011.12.114}, } @article{UBHD-67282683, author={Wahl, Florentine and J{\"a}schke, Andres}, title={PEG-tethered guanosine acetal conjugates for the enzymatic synthesis of modified RNA}, year={2012}, pages={1224-1226}, language={eng}, issn={0006-291X}, volume={417}, journal={Biochemical and biophysical research communications}, } @article{UBHD-69316093, author={Weber, Frederik and Motzkus, Nikolas and Brandl, Leona and M{\"o}hler, Marvin and Alempijevic, Andrijana and J{\"a}schke, Andres}, title={Identification and in vitro characterization of UDP-GlcNAc-RNA cap-modifying and decapping enzymes}, year={2024}, pages={5438-5450}, language={eng}, issn={1362-4962}, volume={52}, number={10 vom: Juni}, note={Gesehen am 07.03.2025}, journal={Nucleic acids research}, doi={10.1093/nar/gkae353}, } @incollection{UBHD-67284399, author={Weigand, Barbara-Sylvia and J{\"a}schke, Andres}, title={Catalytically active RNA molecules}, subtitle={tools in organic chemistry}, year={2006}, pages={211-227}, language={eng}, isbn={3-527-31059-2 and 978-3-527-31059-3}, booktitle={The aptamer handbook}, editor={Klussmann, Sven}, } @article{UBHD-67285559, author={Weyer, Sascha W. and Klevanski, Maja and Hick, Meike and Filippov, Mikhail A. and Saar, Martina and J{\"a}schke, Andres and M{\"u}ller, Ulrike C.}, title={APP and APLP2 are essential at PNS and CNS synapses for transmission, spatial learning and LTP}, year={2011}, pages={2266-2280}, language={eng}, issn={0261-4189}, volume={30}, journal={The EMBO journal}, } @article{UBHD-67282684, author={Wiesmayr, Anna and J{\"a}schke, Andres}, title={Isolation and characterization of fluorescence-enhancing RNA tags}, year={2011}, pages={1041-1047}, language={eng}, issn={0960-894X}, volume={19}, journal={Bioorganic & medicinal chemistry letters}, } @article{UBHD-68981453, author={Wiesmayr, Anna and J{\"a}schke, Andres}, title={Isolation and characterization of fluorescence-enhancing RNA tags}, year={2011}, pages={1041-1047}, language={eng}, issn={1464-3391}, volume={19}, number={3}, note={Available online 12 August 2010 ; Gesehen am 03.11.2022}, journal={Bioorganic & medicinal chemistry}, doi={10.1016/j.bmc.2010.08.006}, } @article{UBHD-67282674, author={Wiesmayr, Anna and Fournier, Pierre and J{\"a}schke, Andres}, title={An on-bead tailing/ligation approach for sequencing resin-bound RNA libraries}, year={2012}, pages={e68}, language={eng}, issn={0305-1048}, volume={40}, number={9}, journal={Nucleic acids research}, } @article{UBHD-68286032, author={Winz, Marie-Luise and Cahová, Hana and N{\"u}bel, Gabriele and Frindert, Jens and H{\"o}fer, Katharina and J{\"a}schke, Andres}, title={Capture and sequencing of NAD-capped RNA sequences with NAD captureSeq}, year={2017}, pages={122-149}, language={eng}, issn={1750-2799}, volume={12}, number={1}, note={Published: 15 December 2016 ; Gesehen am 16.07.2018}, journal={Nature protocols}, doi={10.1038/nprot.2016.163}, } @article{UBHD-68613077, author={Winz, Marie-Luise and Linder, Eva Christina and André, Timon and Becker, Juliane and J{\"a}schke, Andres}, title={Nucleotidyl transferase assisted DNA labeling with different click chemistries}, year={2015}, language={eng}, issn={1362-4962}, volume={43(2015}, note={Gesehen am 02.07.2020}, journal={Nucleic acids research}, doi={10.1093/nar/gkv544}, } @article{UBHD-67282671, author={Winz, Marie-Luise and Samanta, Ayan and Benzinger, Dirk and J{\"a}schke, Andres}, title={Site-specific terminal and internal labeling of RNA by poly(A) polymerase tailing and copper-catalyzed or copper-free strain-promoted click chemistry}, year={2012}, pages={e78}, language={eng}, issn={0305-1048}, volume={40}, number={10}, journal={Nucleic acids research}, } @article{UBHD-68559606, author={Winz, Marie-Luise and J{\"a}schke, Andres}, title={Site-specific one-pot triple click labeling for DNA and RNA}, year={2018}, pages={11781-11784}, language={eng}, issn={1364-548X}, volume={54}, number={83}, note={Gesehen am 31.03.2020}, journal={Chemical communications}, doi={10.1039/C8CC04520H}, } @article{UBHD-68415870, author={Wirth, Regina and S{\"u}nb{\"u}l, Murat and J{\"a}schke, Andres}, title={SiRA}, subtitle={a silicon rhodamine-binding aptamer for live-cell super-resolution RNA imaging}, year={2019}, pages={7562-7571}, language={eng}, issn={1520-5126}, volume={141}, number={18}, note={Gesehen am 05.08.2019}, journal={Journal of the American Chemical Society}, doi={10.1021/jacs.9b02697}, } @article{UBHD-67283374, author={Wombacher, Richard and Suhm, Sandra and J{\"a}schke, Andres}, title={Control of stereoselectivity in an enzymatic reaction by backdoor access}, year={2006}, pages={2469-2472}, language={eng}, issn={1433-7851 and 0570-0833}, volume={45}, journal={Angewandte Chemie}, } @article{UBHD-67284398, author={Wombacher, Richard and J{\"a}schke, Andres}, title={Katalytische Ribonukleins{\"a}uren}, year={2006}, pages={619-621}, language={eng}, issn={0947-0867}, volume={6}, journal={Biospektrum}, } @article{UBHD-67283375, author={Wombacher, Richard and Suhm, Sandra and J{\"a}schke, Andres}, title={Kontrolle der Stereoselektivit{\"a}t einer enzymatischen Reaktion „durch die Hintert{\"u}r"}, year={2006}, pages={2529-2533}, language={ger}, issn={0044-8249}, volume={118}, journal={Angewandte Chemie}, } @article{UBHD-67283348, author={Wombacher, Richard and J{\"a}schke, Andres}, title={Probing the active site of a Diels-Alderase ribozyme by photoaffinity cross-linking}, year={2008}, pages={8594-8595}, language={eng}, issn={0002-7863}, volume={130}, number={27}, journal={Journal of the American Chemical Society}, } @article{UBHD-67284858, author={Zerreßen-Harte, Andreas and J{\"a}schke, Andres}, title={Toward the selection of ribozymes for 1,3-dipolar cycloaddition reactions}, year={2005}, pages={236-244}, language={eng}, issn={0022-2844}, volume={61}, journal={Journal of molecular evolution}, } @article{UBHD-69057607, author={Zhang, Jingye and Wang, Lu and J{\"a}schke, Andres and S{\"u}nb{\"u}l, Murat}, title={A color-shifting near-infrared fluorescent aptamer-fluorophore module for live-cell RNA imaging}, year={2021}, pages={21441-21448}, language={eng}, issn={1521-3773}, volume={60}, number={39}, note={Gesehen am 29.03.2023}, journal={Angewandte Chemie}, doi={10.1002/anie.202107250}, url={https://doi.org/10.1002/anie.202107250}, library={UB}, } @article{UBHD-69057610, author={Zhang, Jingye and Wang, Lu and J{\"a}schke, Andres and S{\"u}nb{\"u}l, Murat}, title={A color-shifting near-Infrared Fluorescent Aptamer-Fluorophore Module for Live-Cell RNA Imaging}, year={2021}, pages={21611-21618}, language={eng}, issn={1521-3757}, volume={133}, number={39}, note={Gesehen am 29.03.2023}, journal={Angewandte Chemie}, doi={10.1002/ange.202107250}, url={https://doi.org/10.1002/ange.202107250}, library={UB}, } @article{UBHD-68706668, author={Zhang, Yaqing and Kuster, David and Schmidt, Tobias Thomas and Kirrmaier, Daniel and N{\"u}bel, Gabriele and Ibberson, David and Benes, Vladimir and Hombauer, Hans and Knop, Michael and J{\"a}schke, Andres}, title={Extensive 5'-surveillance guards against non-canonical NAD-caps of nuclear mRNAs in yeast}, year={2020}, pages={1-17}, language={eng}, issn={2041-1723}, volume={11}, number={Artikel-ID 5508}, note={Gesehen am 09.05.2022}, journal={Nature Communications}, doi={10.1038/s41467-020-19326-3}, url={https://doi.org/10.1038/s41467-020-19326-3}, library={UB}, }