@article{UBHD-68494162,
  author={Bauer, Tobias Hartmut and Mallm, Jan-Philipp and Ge{\"o}rg, Christina and Rippe, Karsten and Herrmann, Carl and Eils, Roland},
  title={Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children},
  year={2016},
  language={eng},
  issn={1744-4292},
  volume={12(2016},
  note={Gesehen am 27.02.2020},
  journal={Molecular systems biology},
  doi={10.15252/msb.20156520},
}
@article{UBHD-68965610,
  author={Bogeska, Ruzhica and Mikecin, Ana-Matea and Kaschutnig, Paul Emanuel and Fawaz, Malak and B{\"u}chler-Sch{\"a}ff, Marleen and Le, Duy and Ganuza, Miguel and Vollmer, Angelika and Paffenholz, Stella V. and Asada, Noboru and Rodriguez-Correa, Esther and Frauhammer, Felix and Buettner, Florian and Ball, Melanie and Knoch, Julia and St{\"a}ble, Sina and Walter, Dagmar and Petri, Amelie and Carreño-Gonzalez, Martha J. and Wagner, Vinona and Brors, Benedikt and Haas, Simon and Lipka, Daniel and Essers, Marieke and Weru, Vivienn and Holland-Letz, Tim and Mallm, Jan-Philipp and Rippe, Karsten and Kr{\"a}mer, Stephan and Schlesner, Matthias and McKinney Freeman, Shannon and Florian, Maria Carolina and King, Katherine Y. and Frenette, Paul S. and Rieger, Michael A. and Milsom, Michael},
  title={Inflammatory exposure drives long-lived impairment of hematopoietic stem cell self-renewal activity and accelerated aging},
  year={2022},
  pages={1273-1284.e8},
  language={eng},
  issn={1875-9777},
  volume={29},
  number={8},
  journal={Cell stem cell},
  doi={10.1016/j.stem.2022.06.012},
}
@article{UBHD-68295715,
  author={Brocks, David and Schott, Johanna and Oehme, Ina and Witt, Olaf and Mallm, Jan-Philipp and Rippe, Karsten and Stoecklin, Georg},
  title={DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats},
  year={2017},
  pages={1052-1060},
  language={eng},
  issn={1546-1718},
  volume={49},
  number={7},
  note={Gesehen am 15.08.2018},
  journal={Nature genetics},
  doi={10.1038/ng.3889},
}
@article{UBHD-68656883,
  author={Campos, Benito and Weisang, Sarah Christina and Oßwald, Florian and Ali, Ramadan Mahmoud Mohamed and Sedlmeier, Georg and Bageritz, Josephine and Mallm, Jan-Philipp and Hartmann, Christian and Deimling, Andreas von and Popanda, Odilia and Goidts, Violaine and Plass, Christoph and Unterberg, Andreas and Schmezer, Peter and Burhenne, J{\"u}rgen and Herold-Mende, Christel},
  title={Retinoid resistance and multifaceted impairment of retinoic acid synthesis in glioblastoma},
  year={2015},
  pages={1850-1859},
  language={eng},
  issn={1098-1136},
  volume={63},
  number={10},
  note={Gesehen am 03.11.2020},
  journal={Glia},
  doi={10.1002/glia.22849},
}
@article{UBHD-68935250,
  author={Caudron-Herger, Maïwen and M{\"u}ller-Ott, Katharina and Mallm, Jan-Philipp and Marth, Caroline and Schmidt, Ute and Fejes-Tóth, Katalin and Rippe, Karsten},
  title={Coding RNAs with a non-coding function},
  subtitle={Maintenance of open chromatin structure},
  year={2011},
  pages={410-424},
  language={eng},
  issn={1949-1042},
  volume={2},
  number={5},
  note={Gesehen am 28.06.2022},
  journal={Nucleus},
  doi={10.4161/nucl.2.5.17736},
}
@article{UBHD-68559828,
  author={Delacher, Michael and Hotz-Wagenblatt, Agnes and Mallm, Jan-Philipp and Bauer, Katharina and Brors, Benedikt and Feuerer, Markus},
  title={Precursors for nonlymphoid-tissue treg cells reside in secondary lymphoid organs and are programmed by the transcription factor BATF},
  year={2020},
  pages={295-312.e1-e11},
  language={eng},
  issn={1097-4180},
  volume={52},
  number={2},
  note={Gesehen am 31.03.2020},
  journal={Immunity},
  doi={10.1016/j.immuni.2019.12.002},
}
@article{UBHD-68907912,
  author={Derrien, Jennifer and Guérin-Charbonnel, Catherine and Gaborit, Victor and Campion, Loïc and Devic, Magali and Douillard, Elise and Roi, Nathalie and Avet-Loiseau, Hervé and Decaux, Olivier and Facon, Thierry and Mallm, Jan-Philipp and Eils, Roland and Munshi, Nikhil C. and Moreau, Philippe and Herrmann, Carl and Magrangeas, Florence and Minvielle, Stéphane},
  title={The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability},
  year={2021},
  pages={1-21},
  language={eng},
  issn={1756-994X},
  volume={13},
  number={Artikel-ID 127},
  note={Gesehen am 14.04.2022},
  journal={Genome medicine},
  doi={10.1186/s13073-021-00938-3},
}
@article{UBHD-68377942,
  author={Erkek, Serap and Johann, Pascal-David and Zapatka, Marc and Sturm, Dominik and Jones, David T. W. and Korshunov, Andrey and Wolf, Stephan and Mallm, Jan-Philipp and Witt, Olaf and Kulozik, Andreas and Korbel, Jan Oliver and Lichter, Peter and Eils, Roland and Chavez, Lukas and Pfister, Stefan and Kool, Marcel},
  editor={Northcott, Michael},
  title={Comprehensive analysis of chromatin states in atypical teratoid/rhabdoid tumor identifies diverging roles for SWI/SNF and polycomb in gene regulation},
  year={2019},
  pages={25 S.},
  language={eng},
  issn={1878-3686},
  volume={35(2019},
  note={Available online 27 December 2018 ; Gesehen am 08.05.2019},
  journal={Cancer cell},
  doi={10.1016/j.ccell.2018.11.014},
}
@article{UBHD-69181568,
  author={Ghasemi, David R. and Okonechnikov, Konstantin and Rademacher, Anne and Tirier, Stephan Marius and Maaß, Kendra K. and Schumacher, Hanna and Joshi, Piyush and Gold, Maxwell P. and Sundheimer, Julia and Statz, Britta and Rifaioglu, Ahmet and Bauer, Katharina and Schumacher, Sabrina and Bortolomeazzi, Michele and Giangaspero, Felice and Ernst, Kati and Clifford, Steven C. and Sáez Rodríguez, Julio and Jones, David T. W. and Kawauchi, Daisuke and Fraenkel, Ernest and Mallm, Jan-Philipp and Rippe, Karsten and Korshunov, Andrey and Pfister, Stefan and Pajtler, Kristian Wilfried},
  title={Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage},
  year={2024},
  pages={1-20},
  language={eng},
  issn={2041-1723},
  volume={15},
  number={Artikel-ID 269},
  note={Gesehen am 13.02.2024},
  journal={Nature Communications},
  doi={10.1038/s41467-023-44117-x},
}
@article{UBHD-68702578,
  author={Hahn, Matthias and Eck, Simon and W{\"o}rz, Stefan and Mallm, Jan-Philipp and Rohr, Karl and Rippe, Karsten},
  title={Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin},
  year={2013},
  pages={859-872},
  language={eng},
  issn={1549-5477},
  volume={27},
  number={8},
  note={Gesehen am 15.10.2021},
  journal={Genes & development},
  doi={10.1101/gad.210377.112},
}
@article{UBHD-68632927,
  author={Hick, Meike and Herrmann, Ulrike and Weyer, Sascha W. and Mallm, Jan-Philipp and Tsch{\"a}pe, Jakob-Andreas and Borgers, Marianne and Mercken, Marc and Roth, Fabian C. and Draguhn, Andreas and Slomianka, Lutz and Wolfer, David P. and Korte, Martin and M{\"u}ller, Ulrike C.},
  title={Acute function of secreted amyloid precursor protein fragment APPsα in synaptic plasticity},
  year={2015},
  pages={21-37},
  language={eng},
  issn={1432-0533},
  volume={129},
  number={1},
  note={Published online: 29 November 2014 ; Gesehen am 31.08.2020},
  journal={Acta neuropathologica},
  doi={10.1007/s00401-014-1368-x},
}
@article{UBHD-67486480,
  author={J{\"a}ger, Natalie and Mallm, Jan-Philipp and Korshunov, Andrey and Witt, Hendrik and Rippe, Karsten and Pfister, Stefan and Eils, Roland},
  title={Hypermutation of the inactive X chromosome is a frequent event in cancer},
  year={2013},
  pages={1-15},
  language={eng},
  issn={1097-4172},
  volume={155},
  note={Gesehen am 22.10.2013},
  journal={Cell},
  doi={10.1016/j.cell.2013.09.042},
}
@article{UBHD-69159435,
  author={John, Lukas and Poos, Alexandra and Brobeil, Alexander and Schinke, Carolina and Huhn, Stefanie and Prokoph, Nina and Lutz, Raphael and Wagner, Barbara and Zangari, Maurizio and Tirier, Stephan Marius and Mallm, Jan-Philipp and Schumacher, Sabrina and Vonficht, Dominik and Solé-Boldo, Llorenç and Quick, Sabine and Steiger, Simon and Przybilla, Moritz Jakob and Bauer, Katharina and Baumann, Anja and Hemmer, Stefan and Rehnitz, Christoph and L{\"u}ckerath, Christian and Sachpekidis, Christos and Mechtersheimer, Gunhild and Haberkorn, Uwe and Dimitrakopoulou-Strauss, Antonia and Reichert, Philipp and Barlogie, Bart and M{\"u}ller-Tidow, Carsten and Goldschmidt, Hartmut and Hillengaß, Jens and Rasche, Leo and Haas, Simon and Van Rhee, Frits and Rippe, Karsten and Raab, Marc-Steffen and Sauer, Sandra and Weinhold, Niels},
  title={Resolving the spatial architecture of myeloma and its microenvironment at the single-cell level},
  year={2023},
  pages={1-17},
  language={eng},
  issn={2041-1723},
  volume={14},
  number={Artikel-ID 5011},
  note={Gesehen am 09.01.2024},
  journal={Nature Communications},
  doi={10.1038/s41467-023-40584-4},
}
@article{UBHD-68573711,
  author={Junge, Kristin M. and Hirche, Frank and Weichenhan, Dieter and Mallm, Jan-Philipp and Rippe, Karsten and Plass, Christoph and Herrmann, Carl and Stangl, Gabriele I. and Eils, Roland},
  title={Increased vitamin D levels at birth and in early infancy increase offspring allergy risk},
  subtitle={evidence for involvement of epigenetic mechanisms},
  year={2016},
  pages={610-613},
  language={eng},
  issn={1097-6825},
  volume={137},
  number={2},
  note={Available online 15 August 2015 ; Gesehen am 06.05.2020},
  journal={The journal of allergy and clinical immunology},
  doi={10.1016/j.jaci.2015.06.040},
}
@article{UBHD-68382485,
  author={Kalamakis, Georgios and Stiehl, Thomas and Kupke, Janina and Mallm, Jan-Philipp and Anders, Simon and Marciniak-Czochra, Anna and Martín-Villalba, Ana},
  title={Quiescence modulates stem cell maintenance and regenerative capacity in the aging brain},
  year={2019},
  pages={1407-1419.e14},
  language={eng},
  issn={1097-4172},
  volume={176},
  number={6},
  note={Gesehen am 25.04.2019},
  journal={Cell},
  doi={10.1016/j.cell.2019.01.040},
}
@article{UBHD-68084678,
  author={Kitiporn Plaimas and Mallm, Jan-Philipp and Oswald, Marcus and Svara, Fabian and Sourjik, Victor and Eils, Roland and K{\"o}nig, Rainer},
  title={Machine learning based analyses on metabolic networks supports high-throughput knockout screens},
  year={2008},
  language={eng},
  issn={1752-0509},
  volume={2(2008) Artikel-Nr. 67},
  number={11 Seiten},
  note={Der korrekte Vorname von Dr. Mallm lautet Jan-Philipp ; Gesehen am 15.02.2017},
  journal={BMC systems biology},
  doi={10.1186/1752-0509-2-67},
}
@article{UBHD-68584739,
  author={Mallm, Jan-Philipp and Rippe, Karsten},
  title={Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells},
  year={2015},
  pages={1667-1678},
  language={eng},
  issn={2211-1247},
  volume={11},
  number={10},
  note={Gesehen am 05.06.2020},
  journal={Cell reports},
  doi={10.1016/j.celrep.2015.05.015},
}
@article{UBHD-69071567,
  author={Mallm, Jan-Philipp and Tsch{\"a}pe, Jakob-Andreas and Hick, Meike and Filippov, Mikhail A. and M{\"u}ller, Ulrike C.},
  title={Generation of conditional null alleles for APP and APLP2},
  year={2010},
  pages={200-206},
  language={eng},
  issn={1526-968X},
  volume={48},
  number={3 vom: M{\"a}rz},
  note={Gesehen am 03.05.2023},
  journal={Genesis},
  doi={10.1002/dvg.20601},
}
@book{UBHD-67350401,
  author={Mallm, Jan-Philipp},
  title={Identifying epigenetic signaling pathways in embryonic stem cells that are involved in the proliferation of cancer cells},
  year={2012},
  pages={X, 135 S.},
  language={eng},
  note={Zsfassung in engl. und dt. Sprache},
  school={Heidelberg, Univ., Diss., 2012},
  library={UB [Signatur: 2013 U 45]},
}
@article{UBHD-68412232,
  author={Mallm, Jan-Philipp and  ̇Iskar, Murat and Klett, Lara C. and Poos, Alexandra and Erdel, Fabian and Tavernari, Daniele and Schumacher, Sabrina and Brors, Benedikt and Lichter, Peter and Zapatka, Marc and Rippe, Karsten},
  title={Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks},
  year={2019},
  pages={20 S.},
  language={eng},
  issn={1744-4292},
  volume={15(2019},
  note={Gesehen am 25.07.2019},
  journal={Molecular systems biology},
  doi={10.15252/msb.20188339},
}
@article{UBHD-68585617,
  author={Mattout, Anna and Aaronson, Yair and Sailaja, Badi Sri and Raghu Ram, Edupuganti V. and Harikumar, Arigela and Mallm, Jan-Philipp and Sim, Kae Hwan and Nissim-Rafinia, Malka and Supper, Emmanuelle and Singh, Prim B. and Sze, Siu Kwan and Gasser, Susan M. and Rippe, Karsten and Meshorer, Eran},
  title={Heterochromatin protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells},
  year={2015},
  pages={21 S.},
  language={eng},
  issn={1474-760X},
  volume={16(2015) Artikel-Nummer 213},
  number={21 Seiten},
  note={Gesehen am 09.06.2020},
  journal={Genome biology},
  doi={10.1186/s13059-015-0760-8},
}
@article{UBHD-68245734,
  author={Molitor, Jana and Mallm, Jan-Philipp and Rippe, Karsten and Erdel, Fabian},
  title={Retrieving chromatin patterns from deep sequencing data using correlation functions},
  year={2017},
  pages={473-490},
  language={eng},
  issn={1542-0086},
  volume={112},
  number={3},
  note={Gesehen am 23.04.2018},
  journal={Biophysical journal},
  doi={10.1016/j.bpj.2017.01.001},
}
@article{UBHD-69065848,
  author={Muckenhuber, Markus and Seufert, Isabelle and M{\"u}ller-Ott, Katharina and Mallm, Jan-Philipp and Klett, Lara C. and Knotz, Caroline and Hechler, Jana and Kepper, Frank Nikolaus and Erdel, Fabian and Rippe, Karsten},
  title={Epigenetic signals that direct cell type-specific interferon beta response in mouse cells},
  year={2023},
  pages={1-18},
  language={eng},
  issn={2575-1077},
  volume={6},
  note={Gesehen am 17.04.2023},
  journal={Life science alliance},
  doi={10.26508/lsa.202201823},
}
@article{UBHD-69178513,
  author={Piroeva, Kristan V. and McDonald, Charlotte and Xanthopoulos, Charalampos and Fox, Chelsea and Clarkson, Christopher T. and Mallm, Jan-Philipp and Vainshtein, Yevhen and Ruje, Luminita and Klett, Lara C. and Stilgenbauer, Stephan and Mertens, Daniel and Kostareli, Efterpi and Rippe, Karsten and Teif, Vladimir},
  title={Nucleosome repositioning in chronic lymphocytic leukemia},
  year={2023},
  pages={1649-1661},
  language={eng},
  issn={1549-5469},
  volume={33},
  number={10},
  note={Online verf{\"u}gbar: 12. September 2023 ; Gesehen am 07.02.2024},
  journal={Genome research},
  doi={10.1101/gr.277298.122},
}
@article{UBHD-69146494,
  author={Poos, Alexandra and Prokoph, Nina and Przybilla, Moritz Jakob and Mallm, Jan-Philipp and Steiger, Simon and Seufert, Isabelle and John, Lukas and Tirier, Stephan Marius and Bauer, Katharina and Baumann, Anja and Rohleder, Jennifer and Munawar, Umair and Rasche, Leo and Kort{\"u}m, K. Martin and Giesen, Nicola and Reichert, Philipp and Huhn, Stefanie and M{\"u}ller-Tidow, Carsten and Goldschmidt, Hartmut and Stegle, Oliver and Raab, Marc-Steffen and Rippe, Karsten and Weinhold, Niels},
  title={Resolving therapy resistance mechanisms in multiple myeloma by multiomics subclone analysis},
  year={2023},
  pages={1633-1646},
  language={eng},
  issn={1528-0020},
  volume={142},
  number={19},
  note={Gesehen am 27.11.2023},
  journal={Blood},
  doi={10.1182/blood.2023019758},
}
@article{UBHD-68676883,
  author={Roider, Tobias and Seufert, Julian and Uvarovskii, Alexey and Frauhammer, Felix and Bordas, Marie and Abedpour, Nima and Stolarczyk, Marta and Mallm, Jan-Philipp and Herbst, Sophie A. and Bruch, Peter-Martin and Balke-Want, Hyatt and Hundemer, Michael and Rippe, Karsten and Goeppert, Benjamin and Seiffert, Martina and Brors, Benedikt and Mechtersheimer, Gunhild and Zenz, Thorsten and Peifer, Martin and Chapuy, Bj{\"o}rn and Schlesner, Matthias and M{\"u}ller-Tidow, Carsten and Fr{\"o}hling, Stefan and Huber, Wolfgang and Anders, Simon and Dietrich, Sascha},
  title={Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels},
  year={2020},
  pages={896-906},
  language={eng},
  issn={1476-4679},
  volume={22},
  number={7},
  note={Gesehen am 05.01.2021},
  journal={Nature cell biology},
  doi={10.1038/s41556-020-0532-x},
}
@book{UBHD-68561947,
  author={Roider, Tobias and Seufert, Julian and Uvarovskii, Alexey and Frauhammer, Felix and Bordas, Marie and Abedpour, Nima and Stolarczyk, Marta and Mallm, Jan-Philipp and Herbst, Sophie A. and Bruch, Peter-Martin and Balke-Want, Hyatt and Hundemer, Michael and Rippe, Karsten and Goeppert, Benjamin and Seiffert, Martina and Brors, Benedikt and Mechtersheimer, Gunhild and Zenz, Thorsten and Peifer, Martin and Chapuy, Bj{\"o}rn and Schlesner, Matthias and M{\"u}ller-Tidow, Carsten and Fr{\"o}hling, Stefan and Huber, Wolfgang and Anders, Simon and Dietrich, Sascha},
  title={Dissecting intratumor heterogeneity of nodal B cell lymphomas at transcriptional, genetic, and drug response levels},
  publisher={Universit{\"a}t},
  address={Heidelberg},
  year={2020},
  pages={1 Online-Ressource (15 Files)},
  language={eng},
  note={Gesehen am 06.04.2020},
  doi={10.11588/data/VRJUNV},
  url={https://doi.org/10.11588/data/VRJUNV},
  library={UB},
}
@article{UBHD-69191036,
  author={Schuster, Linda and Syed, Afzal Pasha and Tirier, Stephan Marius and Steiger, Simon and Seufert, Isabelle and Becker, Heiko and Duque Afonso, Jesús and Ma, Tobias and Ogawa, Seishi and Mallm, Jan-Philipp and L{\"u}bbert, Michael and Rippe, Karsten},
  title={Progenitor-like cell type of an MLL-EDC4 fusion in acute myeloid leukemia},
  subtitle={to the editor},
  year={2023},
  pages={7079-7083},
  language={eng},
  issn={2473-9537},
  volume={7},
  number={22},
  note={Gesehen am 12.03.2024},
  journal={Blood advances},
  doi={10.1182/bloodadvances.2022009096},
}
@article{UBHD-68987842,
  author={Solé-Boldo, Llorenç and Raddatz, G{\"u}nter and Gutekunst, Julian and Gilliam, Oliver and Bormann, Felix and Liberio, Michelle S and Hasche, Daniel and Antonopoulos, Wiebke and Mallm, Jan-Philipp and Lonsdorf, Anke Susanne and Rodríguez-Paredes, Manuel and Lyko, Frank},
  title={Differentiation-related epigenomic changes define clinically distinct keratinocyte cancer subclasses},
  year={2022},
  pages={22 S.},
  language={eng},
  issn={1744-4292},
  volume={18},
  note={Gesehen am 22.11.2022},
  journal={Molecular systems biology},
  doi={10.15252/msb.202211073},
}
@article{UBHD-68585233,
  author={Solé-Boldo, Llorenç and Raddatz, G{\"u}nter and Sch{\"u}tz, Sabrina and Mallm, Jan-Philipp and Rippe, Karsten and Lonsdorf, Anke Susanne and Rodriguez-Paredes, Manuel and Lyko, Frank},
  title={Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming},
  year={2020},
  pages={12 S.},
  language={eng},
  issn={2399-3642},
  volume={3(2020) Artikel-Nummer 188},
  number={12 Seiten},
  note={Gesehen am 08.06.2020},
  journal={Communications biology},
  doi={10.1038/s42003-020-0922-4},
}
@article{UBHD-68329169,
  author={Teif, Vladimir and Vainshtein, Yevhen and Caudron-Herger, Maïwen and Mallm, Jan-Philipp and H{\"o}fer, Thomas and Rippe, Karsten},
  title={Genome-wide nucleosome positioning during embryonic stem cell development},
  year={2012},
  pages={1185-1192},
  language={eng},
  issn={1545-9985},
  volume={19},
  number={11},
  note={Gesehen am 16.11.2018},
  journal={Nature structural & molecular biology},
  doi={10.1038/nsmb.2419},
}
@article{UBHD-68320065,
  author={Teif, Vladimir and Mallm, Jan-Philipp and Rippe, Karsten and Eils, Roland and Langowski, J{\"o}rg},
  title={Nucleosome repositioning during differentiation of a human myeloid leukemia cell line},
  year={2017},
  pages={188-204},
  language={eng},
  issn={1949-1042},
  volume={8},
  number={2},
  note={Gesehen am 23.10.2018},
  journal={Nucleus},
  doi={10.1080/19491034.2017.1295201},
}
@article{UBHD-68873690,
  author={Teif, Vladimir and Erdel, Fabian and Beshnova, Daria A and Vainshtein, Yevhen and Mallm, Jan-Philipp and Rippe, Karsten},
  title={Taking into account nucleosomes for predicting gene expression},
  year={2013},
  pages={26-38},
  language={eng},
  issn={1095-9130},
  volume={62},
  number={1},
  note={Gesehen am 03.02.2022},
  journal={Methods},
  doi={10.1016/j.ymeth.2013.03.011},
}
@article{UBHD-68460198,
  author={Tirier, Stephan Marius and Park, Jeongbin and Preußer, Friedrich and Steiger, Simon and Mallm, Jan-Philipp and Eismann, Bj{\"o}rn and Rippe, Karsten and Glimm, Hanno and Eils, Roland and Conrad, Christian},
  title={Pheno-seq - linking visual features and gene expression in 3D cell culture systems},
  year={2019},
  pages={15 S.},
  language={eng},
  issn={2045-2322},
  volume={9(2019) Artikel-Nummer 12367},
  number={15 Seiten},
  note={Gesehen am 26.11.2019},
  journal={Scientific reports},
  doi={10.1038/s41598-019-48771-4},
}
@article{UBHD-68807760,
  author={Tirier, Stephan Marius and Mallm, Jan-Philipp and Steiger, Simon and Poos, Alexandra and Awwad, Mohamed and Giesen, Nicola and Casiraghi, Nicola and Susak, Hana and Bauer, Katharina and Baumann, Anja and John, Lukas and Seckinger, Anja and Hose, Dirk and M{\"u}ller-Tidow, Carsten and Goldschmidt, Hartmut and Stegle, Oliver and Hundemer, Michael and Weinhold, Niels and Raab, Marc-Steffen and Rippe, Karsten},
  title={Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single‐cell transcriptomics},
  year={2021},
  pages={1-16},
  language={eng},
  issn={2041-1723},
  volume={12},
  number={Artikel-ID 6960},
  note={Gesehen am 03.12.2021},
  journal={Nature Communications},
  doi={10.1038/s41467-021-26951-z},
}
@article{UBHD-68650154,
  author={Vu, Therese and Straube, Jasmin and Porter, Amy H. and Bywater, Megan and Song, Axia and Ling, Victoria and Cooper, Leanne and Pali, Gabor and Bruedigam, Claudia and Jacquelin, Sebastien and Green, Joanne and Magor, Graham and Perkins, Andrew and Chalk, Alistair M. and Walkley, Carl R. and Heidel, Florian H. and Mukhopadhyay, Pamela and Cloonan, Nicole and Gr{\"o}schel, Stefan and Mallm, Jan-Philipp and Fr{\"o}hling, Stefan and Scholl, Claudia and Lane, Steven W.},
  title={Hematopoietic stem and progenitor cell-restricted Cdx2 expression induces transformation to myelodysplasia and acute leukemia},
  year={2020},
  pages={15 S.},
  language={eng},
  issn={2041-1723},
  volume={11(2020) Artikel-Nummer 3021},
  number={15 Seiten},
  note={Gesehen am 19.10.2020},
  journal={Nature Communications},
  doi={10.1038/s41467-020-16840-2},
}
@article{UBHD-68572616,
  author={Wierzbińska, Justyna Anna and Toth, Reka and Ishaque, Naveed and Rippe, Karsten and Mallm, Jan-Philipp and Klett, Lara C. and Mertens, Daniel and Zenz, Thorsten and Hielscher, Thomas and Seifert, Marc and K{\"u}ppers, Ralf and Assenov, Yassen and Lutsik, Pavlo and Stilgenbauer, Stephan and R{\"o}ßner, Philipp M. and Seiffert, Martina and Byrd, John and Oakes, Christopher C. and Plass, Christoph and Lipka, Daniel},
  title={Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL},
  year={2020},
  pages={1-19},
  language={eng},
  issn={1756-994X},
  volume={12},
  number={Artikel-ID 29},
  note={Gesehen am 30.04.2020},
  journal={Genome medicine},
  doi={10.1186/s13073-020-00724-7},
}
@article{UBHD-69135652,
  author={Wong, John K. L. and Jassowicz, Lena and Herold-Mende, Christel and Seiffert, Martina and Mallm, Jan-Philipp and Lichter, Peter and Zapatka, Marc},
  title={scSNPdemux},
  subtitle={a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis},
  year={2023},
  pages={1-6$t6},
  language={eng},
  issn={1471-2105},
  volume={24},
  note={Gesehen am 31.10.2023},
  journal={BMC bioinformatics},
  doi={10.1186/s12859-023-05440-8},
}
@article{UBHD-68561042,
  author={Zirkel, Anne and Mallm, Jan-Philipp and Rippe, Karsten},
  title={HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types},
  year={2018},
  pages={730-744.e1-e6},
  language={eng},
  issn={1097-4164},
  volume={70},
  number={4},
  note={Gesehen am 23.06.2020},
  journal={Molecular cell},
  doi={10.1016/j.molcel.2018.03.030},
}