@incollection{UBHD-68941144,
  author={Bailoni, Alberto and Pape, Constantin and Wolf, Steffen and Kreshuk, Anna and Hamprecht, Fred},
  title={Proposal-free volumetric instance segmentation from latent single-instance masks},
  year={2020},
  pages={1-20},
  language={eng},
  note={Gesehen am 13.07.2022},
  booktitle={Arxiv},
  doi={10.48550/arXiv.2009.04998},
}
@article{UBHD-68112394,
  author={Beier, Thorsten and Pape, Constantin and Rahaman, Nasim and Prange, Timo and K{\"o}the, Ullrich and Kreshuk, Anna and Hamprecht, Fred},
  title={Multicut brings automated neurite segmentation closer to human performance},
  year={2017},
  pages={101-102},
  language={eng},
  issn={1548-7105},
  volume={14},
  number={2},
  note={Gesehen am 24.04.2017},
  journal={Nature methods},
  doi={10.1038/nmeth.4151},
}
@book{UBHD-68579261,
  author={Berg, Stuart and Kutra, Dominik and Kr{\"o}ger, Thorben and Straehle, Christoph-Nikolas and Kausler, Bernhard and Haubold, Carsten and Schiegg, Martin and Aleš, Janez and Beier, Thorsten and Rudy, Markus and Eren, Kemal and Cervantes, Jaime I and Xu, Buote and Beuttenmueller, Fynn and Wolny, Adrian and Zhang, Chong and K{\"o}the, Ullrich and Hamprecht, Fred and Kreshuk, Anna},
  title={ilastik},
  subtitle={interactive machine learning for (bio)image analysis},
  publisher={Nature Publishing Group},
  address={London, New York},
  year={2019},
  pages={1 Online-Ressource (9 Seiten)},
  language={eng},
  note={In: Nature Methods, 2019 (September 2019), Nr. 16. pp. 1-9. ISSN 1548-7105 (Online-Ausg.), 1548-7091 (Druck-Ausg.)},
  doi={10.1038/s41592-019-0582-9},
  keywords={Deep Learning / Mikroskopie / Maschinelles Lernen / Bildanalyse / Software},
  url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-282831},
  library={UB},
}
@article{UBHD-68470484,
  author={Berg, Stuart and Kutra, Dominik and Kr{\"o}ger, Thorben and Straehle, Christoph-Nikolas and Kausler, Bernhard and Haubold, Carsten and Schiegg, Martin and Aleš, Janez and Beier, Thorsten and Rudy, Markus and Eren, Kemal and Cervantes, Jaime I. and Xu, Buote and Beuttenmueller, Fynn and Wolny, Adrian and Zhang, Chong and K{\"o}the, Ullrich and Hamprecht, Fred and Kreshuk, Anna},
  title={ilastik},
  subtitle={interactive machine learning for (bio)image analysis},
  year={2019},
  pages={1226-1232},
  language={eng},
  issn={1548-7105},
  volume={16},
  number={12},
  note={Gesehen am 23.12.2019},
  journal={Nature methods},
  doi={10.1038/s41592-019-0582-9},
}
@article{UBHD-68876739,
  author={Bhide, Sourabh and Gombalova, Denisa and M{\"o}nke, Gregor and Stegmaier, Johannes and Zinchenko, Valentyna and Kreshuk, Anna and Belmonte, Julio M. and Leptin, Maria},
  title={Mechanical competition alters the cellular interpretation of an endogenous genetic program},
  year={2021},
  pages={1-17},
  language={eng},
  issn={1540-8140},
  volume={220},
  note={Gesehen am 10.02.2022},
  journal={The journal of cell biology},
  doi={10.1083/jcb.202104107},
}
@article{UBHD-68571277,
  author={Calì, Corrado and Baghabra, Jumana and Boges, Daniya J. and Holst, Glendon R. and Kreshuk, Anna and Hamprecht, Fred and Srinivasan, Madhusudhanan and Lehv{\"a}slaiho, Heikki and Magistretti, Pierre J.},
  title={Three-dimensional immersive virtual reality for studying cellular compartments in 3D models from EM preparations of neural tissues},
  year={2016},
  pages={23-38},
  language={eng},
  issn={1096-9861},
  volume={524},
  number={1},
  note={Published  online  August  11,  2015 ; Gesehen am 28.04.2020},
  journal={The journal of comparative neurology},
  doi={10.1002/cne.23852},
}
@incollection{UBHD-68583240,
  author={Haubold, Carsten and Schiegg, Martin and Kreshuk, Anna and Berg, Stuart and K{\"o}the, Ullrich and Hamprecht, Fred},
  title={Segmenting and tracking multiple dividing targets using ilastik},
  year={2016},
  pages={219-229},
  language={eng},
  isbn={978-3-319-28549-8},
  note={Gesehen am 03.06.2020},
  booktitle={Focus on bio-image informatics},
  doi={10.1007/978-3-319-28549-8_8},
}
@article{UBHD-68446675,
  author={Krasowski, Nikola Enrico and Beier, Thorsten and K{\"o}the, Ullrich and Hamprecht, Fred and Kreshuk, Anna},
  title={Neuron segmentation with high-level biological priors},
  year={2018},
  pages={829-839},
  language={eng},
  issn={1558-254X},
  volume={37},
  number={4},
  note={Publication: 06 June 2017 ; Gesehen am 28.10.2019},
  journal={IEEE transactions on medical imaging},
  doi={10.1109/TMI.2017.2712360},
}
@book{UBHD-67366501,
  author={Kreshuk, Anna},
  title={Automated analysis of biomedical data from low to high resolution},
  year={2012},
  pages={IX, 128 S.},
  language={eng},
  school={Heidelberg, Univ., Diss., 2012},
  keywords={Mustererkennung / Automation / Datenanalyse},
  library={UB [Signatur: 2013 U 213] ; MA [Signatur: Diss. Kresh]},
}
@book{UBHD-67369266,
  author={Kreshuk, Anna},
  title={Automated analysis of biomedical data from low to high resolution},
  year={2012},
  pages={Online-Ressource},
  language={eng},
  note={Mit einer dt. Zsfassung. ; Online publiziert: 2013.},
  school={Heidelberg, Univ., Diss., 2012},
  doi={10.11588/heidok.00014498},
  keywords={Mustererkennung / Automation / Datenanalyse},
  url={http://archiv.ub.uni-heidelberg.de/volltextserver/14498/},
  library={UB},
}
@article{UBHD-68939320,
  author={Kreshuk, Anna and Stankiewicz, Marta and Lou, Xinghua and Kirchner, Marc and Hamprecht, Fred and Mayer, Matthias P.},
  title={Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HeXicon},
  year={2011},
  pages={125-131},
  language={eng},
  issn={1387-3806 and 0168-1176 and 0020-7381},
  volume={302},
  number={1},
  note={Available online 15 September 2010 ; Gesehen am 08.07.2022},
  journal={International journal of mass spectrometry},
  doi={10.1016/j.ijms.2010.08.025},
}
@article{UBHD-68939887,
  author={Kreshuk, Anna and Straehle, Christoph-Nikolas and Sommer, Christoph and K{\"o}the, Ullrich and Cantoni, Marco and Knott, Graham and Hamprecht, Fred},
  title={Automated detection and segmentation of synaptic contacts in nearly isotropic serial electron microscopy images},
  year={2011},
  pages={1-8},
  language={eng},
  issn={1932-6203},
  volume={6},
  note={Gesehen am 11.07.2022},
  journal={PLOS ONE},
  doi={10.1371/journal.pone.0024899},
}
@article{UBHD-68643568,
  author={Kreshuk, Anna and K{\"o}the, Ullrich and Pax, Elizabeth and Bock, Davi D. and Hamprecht, Fred},
  title={Automated detection of synapses in serial section transmission electron microscopy image stacks},
  year={2014},
  pages={11 S.},
  language={eng},
  issn={1932-6203},
  volume={9(2014},
  note={Gesehen am 06.10.2020},
  journal={PLOS ONE},
  doi={10.1371/journal.pone.0087351},
}
@article{UBHD-68087522,
  author={Kreshuk, Anna and Walecki, Robert and K{\"o}the, Ullrich and Hamprecht, Fred},
  title={Automated tracing of myelinated axons and detection of the nodes of Ranvier in serial images of peripheral nerves},
  year={2015},
  pages={143-154},
  language={eng},
  issn={1365-2818},
  volume={259},
  number={2},
  note={Gesehen am 21.02.2017},
  journal={Journal of microscopy},
  doi={10.1111/jmi.12266},
}
@article{UBHD-68747416,
  author={Maco, Bohumil and Holtmaat, Anthony and Cantoni, Marco and Kreshuk, Anna and Straehle, Christoph-Nikolas and Hamprecht, Fred and Knott, Graham W.},
  title={Correlative in vivo 2 photon and focused ion beam scanning electron microscopy of cortical neurons},
  year={2013},
  pages={1-7},
  language={eng},
  issn={1932-6203},
  volume={8},
  note={Gesehen am 11.06.2021},
  journal={PLOS ONE},
  doi={10.1371/journal.pone.0057405},
}
@article{UBHD-68628296,
  author={Maco, Bohumil and Cantoni, Marco and Holtmaat, Anthony and Kreshuk, Anna and Hamprecht, Fred and Knott, Graham W.},
  title={Semiautomated correlative 3D electron microscopy of in vivo- imaged axons and dendrites},
  year={2014},
  pages={1354-1366},
  language={eng},
  issn={1750-2799},
  volume={9},
  number={6},
  note={Gesehen am 18.08.2020},
  journal={Nature protocols},
  doi={10.1038/nprot.2014.101},
}
@article{UBHD-68793659,
  author={Martínez Vergara, Hernando and Pape, Constantin and Meechan, Kimberly and Zinchenko, Valentyna and Genoud, Christel and Wanner, Adrian A. and Mutemi, Kevin Nzumbi and Titze, Benjamin and Templin, Rachel M. and Bertucci, Paola Y. and Simakov, Oleg and D{\"u}richen, Wiebke and Machado, Pedro and Savage, Emily L. and Schermelleh, Lothar and Schwab, Yannick and Friedrich, Rainer W. and Kreshuk, Anna and Tischer, Christian and Arendt, Detlev},
  title={Whole-body integration of gene expression and single-cell morphology},
  year={2021},
  pages={4819-4837.e22},
  language={eng},
  issn={1097-4172},
  volume={184},
  number={18},
  note={Gesehen am 26.10.2021},
  journal={Cell},
  doi={10.1016/j.cell.2021.07.017},
}
@article{UBHD-69046793,
  author={Pape, Constantin and Meechan, Kimberly and Moreva, Ekaterina and Schorb, Martin and Chiaruttini, Nicolas and Zinchenko, Valentyna and Martinez Vergara, Hernando and Mizzon, Giulia and Moore, Josh and Arendt, Detlev and Kreshuk, Anna and Schwab, Yannick and Tischer, Christian},
  title={MoBIE},
  subtitle={a Fiji plugin for sharing and exploration of multi-modal cloud-hosted big image data},
  year={2023},
  pages={1-2},
  language={eng},
  issn={1548-7105},
  volume={20},
  note={Gesehen am 02.03.2023},
  journal={Nature methods},
  doi={10.1038/s41592-023-01776-4},
}
@article{UBHD-68697195,
  author={Vijayan, Athul and Tofanelli, Rachele and Strauss, S{\"o}ren and Cerrone, Lorenzo and Wolny, Adrian and Strohmeier, Joanna and Kreshuk, Anna and Hamprecht, Fred and Smith, Richard S and Schneitz, Kay},
  title={A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule},
  year={2021},
  pages={38 S.},
  language={eng},
  issn={2050-084X},
  volume={10(2021) Artikel-Nummer e63262},
  number={38 Seiten},
  note={Gesehen am 09.02.2021},
  journal={eLife},
  doi={10.7554/eLife.63262},
}