@article{UBHD-68128114,
  author={Boy, Aurelia Lara and Zhai, Zongzhao and Kussler-Schneider, Yvonne and Kaspar, Petra and Lohmann, Ingrid},
  title={Vectors for efficient and high-throughput construction of fluorescent drosophila reporters using the PhiC31 site-specific integration system},
  year={2010},
  pages={452-456},
  language={eng},
  issn={1526-968X},
  volume={48},
  number={7},
  note={Gesehen am 13.06.2017},
  journal={Genesis},
  doi={10.1002/dvg.20637},
}
@article{UBHD-68613107,
  author={Carnesecchi, Julie and Lohmann, Ingrid},
  title={Closing the gap},
  subtitle={a roadmap to single-cell regulatory genomics},
  year={2020},
  pages={3 S.},
  language={eng},
  issn={1744-4292},
  volume={16(2020},
  note={Gesehen am 02.07.2020},
  journal={Molecular systems biology},
  doi={10.15252/msb.20209497},
}
@article{UBHD-68377905,
  author={Carnesecchi, Julie and Pinto, Pedro and Lohmann, Ingrid},
  title={Hox transcription factors},
  subtitle={an overview of multi-step regulators of gene expression},
  year={2018},
  pages={723-732},
  language={eng},
  issn={1696-3547},
  volume={62},
  number={11-12},
  note={Gesehen am 01.04.2019},
  journal={The international journal of developmental biology},
  doi={10.1387/ijdb.180294il},
}
@article{UBHD-68646275,
  author={Carnesecchi, Julie and Sigismondo, Gianluca and Domsch, Katrin and Baader, Clara Eva Paula and Rafiee, Mahmoud-Reza and Krijgsveld, Jeroen and Lohmann, Ingrid},
  title={Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity},
  year={2020},
  pages={17 S.},
  language={eng},
  issn={2041-1723},
  volume={11(2020) Artikel-Nummer 1388},
  number={17 Seiten},
  note={Gesehen am 08.10.2020},
  journal={Nature Communications},
  doi={10.1038/s41467-020-15223-x},
}
@incollection{UBHD-68130962,
  author={Domsch, Katrin and Papagiannouli, Fani and Lohmann, Ingrid},
  title={The HOX-Apoptosis regulatory interplay in development and disease},
  year={2015},
  pages={121-158},
  language={eng},
  isbn={978-0-12-410425-9},
  note={Gesehen am 23.06.2017},
  booktitle={Apoptosis and development},
  editor={Steller, Hermann},
  doi={10.1016/bs.ctdb.2015.07.014},
}
@article{UBHD-68702631,
  author={Domsch, Katrin and Schr{\"o}der, Julia and Janeschik, Matthias and Schaub, Christoph and Lohmann, Ingrid},
  title={The Hox transcription factor Ubx ensures somatic myogenesis by suppressing the mesodermal master regulator Twist},
  year={2021},
  language={eng},
  issn={2211-1247},
  volume={34(2021},
  note={Gesehen am 23.02.2021},
  journal={Cell reports},
  doi={10.1016/j.celrep.2020.108577},
}
@article{UBHD-67926888,
  author={Friedrich, Jana and Sorge, Sebastian and Bujupi, Fatmire and Eichenlaub, Michael P. and Schulz, Natalie G. and Wittbrodt, Joachim and Lohmann, Ingrid},
  title={Hox function is required for the development and maintenance of the Drosophila feeding motor unit},
  year={2016},
  pages={1-11},
  language={eng},
  issn={2211-1247},
  volume={14},
  note={Gesehen am 19.01.2016},
  journal={Cell reports},
  doi={10.1016/j.celrep.2015.12.077},
}
@article{UBHD-68122275,
  author={Gangishetti, Umesh and Lohmann, Ingrid},
  title={The transcription factor Grainy head and the steroid hormone ecdysone cooperate during differentiation of the skin of Drosophila melanogaster},
  year={2012},
  pages={283-295},
  language={eng},
  issn={1365-2583},
  volume={21},
  number={3},
  note={Gesehen am 23.05.2017},
  journal={Insect molecular biology},
  doi={10.1111/j.1365-2583.2012.01134.x},
}
@article{UBHD-68121903,
  author={Ha, Nati and Polychronidou, Maria and Lohmann, Ingrid},
  title={COPS},
  subtitle={Detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets},
  year={2012},
  language={eng},
  issn={1932-6203},
  volume={7(2012},
  note={Gesehen am 22.05.2017},
  journal={PLOS ONE},
  doi={10.1371/journal.pone.0052055},
}
@article{UBHD-68116790,
  author={Hueber, Stefanie Diana and Lohmann, Ingrid},
  title={Comparative analysis of Hox downstream genes in Drosophila},
  year={2007},
  pages={381-392},
  language={eng},
  issn={1477-9129},
  volume={134},
  number={2},
  note={Gesehen am 08.05.2017},
  journal={Development},
  doi={10.1242/dev.02746},
}
@article{UBHD-68116797,
  author={Hueber, Stefanie Diana and Lohmann, Ingrid},
  title={Shaping segments},
  subtitle={Hox gene function in the genomic age},
  year={2008},
  pages={965-979},
  language={eng},
  issn={0265-9247},
  volume={30},
  number={10},
  note={Gesehen am 08.05.2017},
  journal={Bioessays},
  doi={10.1002/bies.20823},
}
@article{UBHD-69287924,
  author={Lim, Bryce and Domsch, Katrin and Mall, Moritz and Lohmann, Ingrid},
  title={Canalizing cell fate by transcriptional repression},
  year={2024},
  pages={144-161},
  language={eng},
  issn={1744-4292},
  volume={20},
  number={3},
  note={Gesehen am 08.01.2025},
  journal={Molecular systems biology},
  doi={10.1038/s44320-024-00014-z},
}
@article{UBHD-68116787,
  author={Lohmann, Ingrid},
  title={Hox genes},
  subtitle={realising the importance of realisators},
  year={2006},
  pages={R988-R989},
  language={eng},
  issn={1879-0445},
  volume={16},
  number={23},
  note={Gesehen am 08.05.2017},
  journal={Current biology},
  doi={10.1016/j.cub.2006.10.044},
}
@article{UBHD-68253924,
  author={Martins, Leila and Lohmann, Ingrid and Fr{\"o}hling, Stefan},
  title={Stk33 is required for spermatid differentiation and male fertility in mice},
  year={2018},
  pages={84-93},
  language={eng},
  issn={1095-564X},
  volume={433},
  number={1},
  note={Available online 16 November 2017 ; Gesehen am 23.05.2018},
  journal={Developmental biology},
  doi={10.1016/j.ydbio.2017.11.007},
}
@article{UBHD-68119890,
  author={Merabet, Samir and Lohmann, Ingrid},
  title={Toward a new twist in Hox and TALE DNA-binding specificity},
  year={2015},
  pages={259-261},
  language={eng},
  issn={1878-1551},
  volume={32},
  number={3},
  note={Gesehen am 16.05.2017},
  journal={Developmental cell},
  doi={10.1016/j.devcel.2015.01.030},
}
@article{UBHD-67542145,
  author={Papagiannouli, Fani and Schardt, Lisa and Grajcarek, Janin and Ha, Nati and Lohmann, Ingrid},
  title={The Hox gene Abd-B controls stem cell niche function in the Drosophila testis},
  year={2014},
  pages={189-202},
  language={eng},
  issn={1534-5807},
  volume={28},
  number={2},
  journal={Developmental cell},
}
@article{UBHD-68649464,
  author={Papagiannouli, Fani and Schardt, Lisa and Grajcarek, Janin and Ha, Nati and Lohmann, Ingrid},
  title={The Hox gene Abd-B controls stem cell niche function in the Drosophila testis},
  year={2014},
  pages={189-202},
  language={eng},
  issn={1878-1551},
  volume={28},
  number={2},
  note={Gesehen am 16.10.2020},
  journal={Developmental cell},
  doi={10.1016/j.devcel.2013.12.016},
}
@article{UBHD-68153620,
  author={Papagiannouli, Fani and Lohmann, Ingrid},
  title={Shaping the niche},
  subtitle={lessons from the Drosophila testis and other model systems},
  year={2012},
  pages={723-736},
  language={eng},
  issn={1860-7314},
  volume={7},
  number={6},
  note={Gesehen am 24.08.2017},
  journal={Biotechnology journal},
  doi={10.1002/biot.201100352},
}
@article{UBHD-68119885,
  author={Papagiannouli, Fani and Lohmann, Ingrid},
  title={Stage-specific control of stem cell niche architecture in the Drosophila testis by the posterior Hox gene Abd-B},
  year={2015},
  pages={122-130},
  language={eng},
  issn={2001-0370},
  volume={13},
  note={Gesehen am 16.05.2017},
  journal={Computational and structural biotechnology journal},
  doi={10.1016/j.csbj.2015.01.001},
}
@article{UBHD-68771008,
  author={Paul, Rachel and Giraud, Guillaume and Domsch, Katrin and Duffraisse, Marilyne and Marmigère, Frédéric and Khan, Soumen and Vanderperre, Solene and Lohmann, Ingrid and Stoks, Robby and Shashidhara, L. S. and Merabet, Samir},
  title={Hox dosage contributes to flight appendage morphology in Drosophila},
  year={2021},
  pages={1-13},
  language={eng},
  issn={2041-1723},
  volume={12(2021) vom: 17. Mai},
  number={Artikel-ID 2892},
  note={Gesehen am 16.08.2021},
  journal={Nature Communications},
  doi={10.1038/s41467-021-23293-8},
}
@article{UBHD-69125076,
  author={Pinto, Pedro and Domsch, Katrin and Lohmann, Ingrid},
  title={Hox function and specificity},
  subtitle={a tissue centric view},
  year={2024},
  pages={35-43},
  language={eng},
  issn={1096-3634},
  volume={152/153(2024) vom: Jan./Feb.},
  note={Online verf{\"u}gbar am 12. Dezember 2022, Artikelversion vom 3. August 2023 ; Gesehen am 28.11.2023},
  journal={Seminars in cell & developmental biology},
  doi={10.1016/j.semcdb.2022.11.011},
}
@article{UBHD-68979412,
  author={Pinto, Pedro and Domsch, Katrin and Gao, Xuefan and W{\"o}lk, Michaela and Carnesecchi, Julie and Lohmann, Ingrid},
  title={Specificity of the Hox member Deformed is determined by transcription factor levels and binding site affinities},
  year={2022},
  pages={1-17},
  language={eng},
  issn={2041-1723},
  volume={13},
  number={Artikel-ID 5037},
  note={Gesehen am 27.10.2022},
  journal={Nature Communications},
  doi={10.1038/s41467-022-32408-8},
  url={https://doi.org/10.1038/s41467-022-32408-8},
  library={UB},
}
@article{UBHD-68121905,
  author={Polychronidou, Maria and Lohmann, Ingrid},
  title={Cell-type specific cis-regulatory networks},
  year={2013},
  pages={13-17},
  language={eng},
  issn={1933-6942},
  volume={7},
  number={1},
  note={Published online: 06 Dec 2012 ; Gesehen am 22.05.2017},
  journal={Fly},
  doi={10.4161/fly.22939},
}
@incollection{UBHD-68119921,
  author={Polychronidou, Maria and Lohmann, Ingrid},
  title={Hox transcriptomics in Drosophila embryos},
  year={2014},
  pages={197-208},
  language={eng},
  isbn={978-1-4939-1242-1},
  note={Gesehen am 16.05.2017},
  booktitle={Hox genes},
  editor={Graba, Yacine and Rezsohazy, René},
  doi={10.1007/978-1-4939-1242-1_12},
}
@incollection{UBHD-68119925,
  author={Polychronidou, Maria and Lohmann, Ingrid},
  title={Hox transcriptomics in Drosophila embryos},
  year={2014},
  pages={197-208},
  language={eng},
  isbn={978-1-4939-1241-4 and 978-1-4939-1242-1 and 1-4939-1241-0},
  booktitle={Hox genes},
  editor={Graba, Yacine and Rezsohazy, René},
}
@article{UBHD-68122283,
  author={Sancar, Gencer and Sancar, Cigdem and Br{\"u}gger, Britta and Ha, Nati and Sachsenheimer, Timo and Lohmann, Ingrid and Wieland, Felix T. and H{\"o}fer, Thomas and Diernfellner, Axel and Brunner, Michael},
  title={A global gircadian gepressor controls antiphasic expression of metabolic genes in neurospora},
  year={2011},
  pages={687-697},
  language={eng},
  issn={1097-4164},
  volume={44},
  number={5},
  note={Gesehen am 23.05.2017},
  journal={Molecular cell},
  doi={10.1016/j.molcel.2011.10.019},
}
@article{UBHD-68119882,
  author={Schardt, Lisa and Ander, Janina-Jacqueline and Lohmann, Ingrid and Papagiannouli, Fani},
  title={Stage-specific control of niche positioning and integrity in the Drosophila testis},
  year={2015},
  pages={336-348},
  language={eng},
  issn={1872-6356},
  volume={138},
  number={3},
  note={Gesehen am 16.05.2017},
  journal={Mechanisms of development},
  doi={10.1016/j.mod.2015.07.009},
}
@article{UBHD-68624422,
  author={Sorge, Sebastian and Theelke, Jonas and Yildirim, Kerem and Lohmann, Ingrid},
  title={ATF4-induced warburg metabolism drives over-proliferation in drosophila},
  year={2020},
  pages={20 S.},
  language={eng},
  issn={2211-1247},
  volume={31(2020},
  note={Gesehen am 05.08.2020},
  journal={Cell reports},
  doi={10.1016/j.celrep.2020.107659},
}
@article{UBHD-68153618,
  author={Sorge, Sebastian and Ha, Nati and Polychronidou, Maria and Friedrich, Jana and Kaspar, Petra and Mundorf, Juliane and R{\"a}tzer, Jenny and Papagiannouli, Fani and Lohmann, Ingrid},
  title={The cis‐regulatory code of Hox function in Drosophila},
  year={2012},
  pages={3323-3333},
  language={eng},
  issn={1460-2075},
  volume={31},
  number={15},
  note={Gesehen am 24.08.2017},
  journal={The EMBO journal},
  doi={10.1038/emboj.2012.179},
}
@article{UBHD-68589169,
  author={Sorge, Sebastian and Ha, Nati and Polychronidou, Maria and Friedrich, Jana and Bezdan, Daniela and Kaspar, Petra and Schafer, Martin and Ossowski, Stephan and Henz, Stefan and Mundorf, Juliane and R{\"a}tzer, Jenny and Papagiannouli, Fani and Lohmann, Ingrid},
  title={Corrigendum},
  subtitle={The cis-regulatory code of Hox function in Drosophila},
  year={2015},
  pages={2862-2862},
  language={eng},
  issn={1460-2075},
  volume={34},
  number={22},
  note={Gesehen am 19.06.2020},
  journal={The EMBO journal},
  doi={10.15252/embj.201593321},
}
@article{UBHD-68116803,
  author={St{\"o}be, Petra and Boy, Aurelia Lara and Lohmann, Ingrid},
  title={Multifactorial regulation of a Hox target gene},
  year={2009},
  pages={e1000412},
  language={eng},
  issn={1553-7404},
  volume={5},
  number={3},
  note={Gesehen am 08.05.2017},
  journal={PLoS Genetics},
  doi={10.1371/journal.pgen.1000412},
}
@article{UBHD-68387453,
  author={Tamirisa, Srividya and Papagiannouli, Fani and Rempel, Eugen and Ermakova, Olga and Trost, Nils and Zhou, Jun and Ruhland, Naima and Boutros, Michael and Lohmann, Jan U. and Lohmann, Ingrid},
  title={Decoding the regulatory logic of the Drosophila male stem cell system},
  year={2018},
  pages={3072-3086},
  language={eng},
  issn={2211-1247},
  volume={24},
  number={11},
  note={Gesehen am 07.05.2019},
  journal={Cell reports},
  doi={10.1016/j.celrep.2018.08.013},
}
@article{UBHD-68395247,
  author={Trost, Nils and Rempel, Eugen and Ermakova, Olga and Tamirisa, Srividya and Pârcălăbescu, Letiția and Lohmann, Jan U. and Lohmann, Ingrid},
  title={WEADE},
  subtitle={a workflow for enrichment analysis and data exploration},
  year={2018},
  pages={10 S.},
  language={eng},
  issn={1932-6203},
  volume={13(2018},
  note={Gesehen am 04.06.2019},
  journal={PLOS ONE},
  doi={10.1371/journal.pone.0204016},
}
@article{UBHD-68929761,
  author={Velten, Jessica and Gao, Xuefan and Nierop y Sanchez, Patrick van and Domsch, Katrin and Agarwal, Rashi and Bognar, Lena and Paulsen, Malte and Velten, Lars and Lohmann, Ingrid},
  title={Single-cell RNA sequencing of motoneurons identifies regulators of synaptic wiring in Drosophila embryos$nJessica Velten, Xuefan Gao, Patrick van Nierop y Sanchez, Katrin Domsch, Rashi Agarwal, Lena Bognar, Malte Paulsen, Lars Velten & Ingrid Lohmann},
  year={2022},
  pages={1-27},
  language={eng},
  issn={1744-4292},
  volume={18},
  note={Gesehen am 11.06.2022},
  journal={Molecular systems biology},
  doi={10.15252/msb.202110255},
  url={https://doi.org/10.15252/msb.202110255},
  library={UB},
}
@article{UBHD-69121454,
  author={Yildirim, Kerem and Nierop y Sanchez, Patrick van and Lohmann, Ingrid},
  title={Analysis of Bub3 and Nup75 in the drosophila male germline lineage},
  year={2023},
  pages={1-11},
  language={eng},
  issn={2667-2901},
  volume={175(2023) vom: Sept.},
  number={Artikel-ID 203863},
  note={Online ver{\"o}ffentlicht am 5. Juni 2023 ; Gesehen am 13.12.2023},
  journal={Cells & development},
  doi={10.1016/j.cdev.2023.203863},
}
@article{UBHD-68153621,
  author={Zhai, Zongzhao and Ha, Nati and Papagiannouli, Fani and Sorge, Sebastian and Lohmann, Ingrid},
  title={Antagonistic regulation of apoptosis and differentiation by the cut transcription factor represents a tumor-suppressing mechanism in Drosophila},
  year={2012},
  language={eng},
  issn={1553-7404},
  volume={8(2012},
  note={Gesehen am 24.08.2017},
  journal={PLoS Genetics},
  doi={10.1371/journal.pgen.1002582},
}
@article{UBHD-68117411,
  author={Zhai, Zongzhao and Boy, Aurelia Lara and Lohmann, Ingrid},
  title={Cellular analysis of newly identified Hox downstream genes in Drosophila},
  year={2010},
  pages={273-278},
  language={eng},
  issn={1618-1298},
  volume={89},
  number={2-3},
  note={Gesehen am 09.05.2017},
  journal={European journal of cell biology},
  doi={10.1016/j.ejcb.2009.11.012},
}
@article{UBHD-68117409,
  author={Zhai, Zongzhao and Stein, Sokrates and Lohmann, Ingrid},
  title={Expression of the apoptosis gene reaper in homeotic, segmentation and other mutants in Drosophila},
  year={2009},
  pages={357-363},
  language={eng},
  issn={1872-7298},
  volume={9},
  number={5},
  note={Gesehen am 09.05.2017},
  journal={Gene expression patterns},
  doi={10.1016/j.gep.2009.01.004},
}
@article{UBHD-68128108,
  author={Zhai, Zongzhao and Yang, Xingke and Lohmann, Ingrid},
  title={Functional dissection of the Hox protein Abdominal-B in Drosophila cell culture},
  year={2011},
  pages={761-766},
  language={eng},
  issn={1090-2104},
  volume={414},
  number={4},
  note={Gesehen am 13.06.2017},
  journal={Biochemical and biophysical research communications},
  doi={10.1016/j.bbrc.2011.09.154},
}