@article{UBHD-68301963, author={Afzal, Saira and Wilkening, Stefan and Kalle, Christof von and Schmidt, Manfred and Fronza, Raffaele}, title={GENE-IS}, subtitle={time-efficient and accurate analysis of viral integration events in large-scale gene therapy data}, year={2017}, pages={133-139}, language={eng}, issn={2162-2531}, volume={6}, note={Published online: 1 December 2016 ; Gesehen am 04.09.2018}, journal={Molecular therapy}, doi={10.1016/j.omtn.2016.12.001}, } @article{UBHD-68303081, author={Afzal, Saira and Gil-Fariña, Irene and Gabriel, Richard and Kalle, Christof von and Schmidt, Manfred and Fronza, Raffaele}, title={Systematic comparative study of computational methods for T-cell receptor sequencing data analysis}, year={2019}, pages={222-234}, language={eng}, issn={1477-4054}, volume={20}, number={1}, note={ Published: 23 September 2017 ; Gesehen am 08.07.2019}, journal={Briefings in bioinformatics}, doi={10.1093/bib/bbx111}, } @article{UBHD-68581688, author={Fronza, Raffaele and Vasciaveo, Alessandro and Benso, Alfredo and Schmidt, Manfred}, title={A graph based framework to model virus integration sites}, year={2016}, pages={69-77}, language={eng}, issn={2001-0370}, volume={14}, note={Available online 30 November 2015 ; Gesehen am 28.05.2020}, journal={Computational and structural biotechnology journal}, doi={10.1016/j.csbj.2015.10.006}, } @article{UBHD-68631337, author={Fronza, Raffaele and Lusic, Marina and Schmidt, Manfred and Lucic, Bojana}, title={Spatial-temporal variations in atmospheric factors contribute to SARS-CoV-2 outbreak}, year={2020}, language={eng}, issn={1999-4915}, volume={12(2020}, note={Gesehen am 26.08.2020}, journal={Viruses}, doi={10.3390/v12060588}, } @article{UBHD-68263864, author={Gießler, Klara Monika and Kleinheinz, Kortine and H{\"u}bschmann, Daniel and Balasubramanian, Gnana Prakash and Dubash, Taronish Dorab and Dieter, Sebastian M. and Siegl, Christine and Herbst, Friederike and Weber, Sarah and Hoffmann, Christopher M. and Fronza, Raffaele and Buchhalter, Ivo and Paramasivam, Nagarajan and Eils, Roland and Schmidt, Manfred and Kalle, Christof von and Schneider, Martin and Ulrich, Alexis and Scholl, Claudia and Fr{\"o}hling, Stefan and Weichert, Wilko and Brors, Benedikt and Schlesner, Matthias and Ball, Claudia R. and Glimm, Hanno}, title={Genetic subclone architecture of tumor clone-initiating cells in colorectal cancer}, year={2017}, pages={2073-2088}, language={eng}, issn={1540-9538}, volume={214}, number={7}, note={Published June 1, 2017 ; Gesehen am 20.06.2018}, journal={Journal of experimental medicine}, doi={10.1084/jem.20162017}, } @article{UBHD-68374240, author={Gil-Fariña, Irene and Fronza, Raffaele and Schmidt, Manfred}, title={Recombinant AAV integration is not associated with hepatic genotoxicity in nonhuman primates and patients}, year={2016}, pages={1100-1105}, language={eng}, issn={1525-0024}, volume={24}, number={6}, note={Gesehen am 29.03.2019}, journal={Molecular therapy}, doi={10.1038/mt.2016.52}, } @article{UBHD-68012456, author={K{\"a}ppel, Christine and Fronza, Raffaele and Wolf, Stephan and Nowrouzi, Ali and Glimm, Hanno and Kalle, Christof von and Schmidt, Manfred}, title={Reply to: NGS library preparation may generate artifactual integration sites of AAV vectors}, year={2014}, pages={578-579$t2}, language={eng}, issn={1546-170X}, volume={20}, number={6}, note={Gesehen am 29.07.2016}, journal={Nature medicine}, doi={10.1038/nm.3584}, } @article{UBHD-68052573, author={Negre, Olivier and Bartholom{\"a}, Cynthia C. and Deichmann, Annette and Fronza, Raffaele and Schmidt, Manfred and Kalle, Christof von}, title={Preclinical evaluation of efficacy and safety of an improved lentiviral vector for the treatment of β-thalassemia and sickle cell disease}, year={2015}, pages={64-81}, language={eng}, issn={1875-5631}, volume={15}, number={1}, note={Gesehen am 18.11.2016}, journal={Current gene therapy}, doi={10.2174/1566523214666141127095336}, } @article{UBHD-68627845, author={Negre, Olivier and Bartholom{\"a}, Cynthia C. and Deichmann, Annette and Fronza, Raffaele and Schmidt, Manfred and Kalle, Christof von}, title={Preclinical evaluation of efficacy and safety of an improved lentiviral vector for the treatment of β-thalassemia and sickle cell disease}, year={2015}, pages={64-81}, language={eng}, issn={1875-5631}, volume={15}, number={1}, note={Gesehen am 17.08.2020}, journal={Current gene therapy}, doi={10.2174/1566523214666141127095336}, } @article{UBHD-67999207, author={Oliveira, Giacomo and Ruggiero, Eliana and Fronza, Raffaele and Lulay, Christina and Kalle, Christof von and Schmidt, Manfred}, title={Erratum for the Research Article: Tracking genetically engineered lymphocytes long-term reveals the dynamics of T cell immunological memory}, year={2015}, language={eng}, issn={1946-6242}, volume={7(2015}, note={Gesehen am 23.06.2016}, journal={Science translational medicine}, doi={10.1126/scitranslmed.aaf1040}, } @article{UBHD-67999206, author={Oliveira, Giacomo and Ruggiero, Eliana and Fronza, Raffaele and Lulay, Christina and Kalle, Christof von and Schmidt, Manfred}, title={Tracking genetically engineered lymphocytes long-term reveals the dynamics of T cell immunological memory}, year={2015}, language={eng}, issn={1946-6242}, volume={7(2015}, note={Gesehen am 23.06.2016}, journal={Science translational medicine}, doi={10.1126/scitranslmed.aac8265}, } @article{UBHD-67966106, author={Petri, Karl and Fronza, Raffaele and Gabriel, Richard and Schmidt, Manfred}, title={Comparative next-generation sequencing of adeno-associated virus inverted terminal repeats}, year={2014}, pages={269-273}, language={eng}, issn={1940-9818}, volume={56}, number={5}, note={DOI funktioniert nicht, gesehen am 12.04.2016}, journal={BioTechniques}, doi={10.2144/000114170}, } @article{UBHD-68106320, author={Petri, Karl and Gabriel, Richard and Fronza, Raffaele and Afzal, Saira and K{\"a}ppel, Christine and Schmidt, Manfred}, title={Presence of a trs-like motif promotes rep-mediated wild-type adeno-associated virus type 2 integration}, year={2015}, pages={7428-7432}, language={eng}, issn={1098-5514}, volume={89}, number={14}, note={Gesehen am 04.04.2017}, journal={Journal of virology}, doi={10.1128/JVI.00426-15}, } @article{UBHD-68066581, author={Ruggiero, Eliana and Nicolay, Jan Peter and Fronza, Raffaele and Arens, Anne and Paruzynski, Anna and Nowrouzi, Ali and Lulay, Christina and Schneider, Sven and Goerdt, Sergij and Glimm, Hanno and Schmidt, Manfred and Kalle, Christof von}, title={High-resolution analysis of the human T-cell receptor repertoire}, year={2015}, language={eng}, issn={2041-1723}, volume={6(2015) Artikel-Nummer 8081}, number={7 Seiten}, note={Gesehen am 20.12.2016}, journal={Nature Communications}, doi={10.1038/ncomms9081}, } @article{UBHD-68286536, author={Scholz, Simone and Fronza, Raffaele and Bartholom{\"a}, Cynthia C. and Kalle, Christof von and Gil-Fariña, Irene and Schmidt, Manfred}, title={Lentiviral vector promoter is decisive for aberrant transcript formation}, year={2017}, pages={875-885}, language={eng}, issn={1557-7422}, volume={28}, number={10}, note={Online ahead of print: August 18, 2017 ; Gesehen am 18.07.2018}, journal={Human gene therapy}, doi={10.1089/hum.2017.162}, } @article{UBHD-69067726, author={Suleman, Saqlain and Payne, Annette and Bowden, Johnathan and Haque, Sharmin Al and Zahn, Marco and Fawaz, Serena and Khalifa, Mohammad S. and Jobling, Susan and Hay, David and Franco, Matteo and Fronza, Raffaele and Wang, Wei and Strobel-Freidekind, Olga and Deichmann, Annette and Takeuchi, Yasuhiro and Waddington, Simon N. and Gil-Farina, Irene and Schmidt, Manfred and Themis, Michael}, title={HIV- 1 lentivirus tethering to the genome is associated with transcription factor binding sites found in genes that favour virus survival}, year={2022}, pages={720-729}, language={eng}, issn={1476-5462}, volume={29}, number={12}, note={Gesehen am 21.04.2023}, journal={Gene therapy}, doi={10.1038/s41434-022-00335-4}, } @article{UBHD-68088488, author={Sundarasetty, Bala Sai and Ruggiero, Eliana and Fronza, Raffaele and Schmidt, Manfred and Kalle, Christof von}, title={Generation of lentivirus-induced dendritic cells under GMP-compliant conditions for adaptive immune reconstitution against cytomegalovirus after stem cell transplantation}, year={2015}, pages={19 S.}, language={eng}, issn={1479-5876}, volume={13(2015) Artikel-Nummer 240}, number={19 Seiten}, note={Gesehen am 23.02.2017}, journal={Journal of translational medicine}, doi={10.1186/s12967-015-0599-5}, } @article{UBHD-68331220, author={Wang, Wei and Fronza, Raffaele and Schmidt, Manfred}, title={The clonal fate of live cells}, year={2017}, pages={93-95}, language={eng}, issn={2329-0501}, volume={5}, note={Gesehen am 22.11.2018}, journal={Molecular therapy}, doi={10.1016/j.omtm.2017.03.007}, } @article{UBHD-68284478, author={W{\"u}nsche, Peer and Eckert, Elias Simon Peter and Fronza, Raffaele and Gil-Fariña, Irene and Schmidt, Manfred and Kalle, Christof von and Herbst, Friederike and Glimm, Hanno}, title={Mapping active gene-regulatory regions in human repopulating long-term HSCs}, year={2018}, pages={132-146}, language={eng}, issn={1875-9777}, volume={23}, number={1}, note={Gesehen am 11.07.2018}, journal={Cell stem cell}, doi={10.1016/j.stem.2018.06.003}, } @article{UBHD-68722253, author={Xydia, Maria and Rahbari, Raheleh and Ruggiero, Eliana and Macaulay, Iain and Tarabichi, Maxime and Lohmayer, Robert and Wilkening, Stefan and Michels, Tillmann and Brown, Daniel and Vanuytven, Sebastiaan and Mastitskaya, Svetlana and Laidlaw, Sean and Grabe, Niels and Pritsch, Maria and Fronza, Raffaele and Hexel, Klaus and Schmitt, Steffen and M{\"u}ller-Steinhardt, Michael and Halama, Niels and Domschke, Christoph and Schmidt, Manfred and Kalle, Christof von and Sch{\"u}tz, Florian and Voet, Thierry and Beckhove, Philipp}, title={Common clonal origin of conventional T cells and induced regulatory T cells in breast cancer patients}, year={2021}, pages={1-18}, language={eng}, issn={2041-1723}, volume={12}, number={Artikel-ID 1119}, note={Gesehen am 11.08.2021}, journal={Nature Communications}, doi={10.1038/s41467-021-21297-y}, }