@article{UBHD-69215360, author={Albrecht, Thomas and Rossberg, Annik and Albrecht, Jana Dorothea and Nicolay, Jan Peter and Straub, Beate Katharina and Gerber, Tiemo Sven and Albrecht, Michael and Brinkmann, Fritz and Charbel, Alphonse and Schwab, Constantin and Schreck, Johannes and Brobeil, Alexander and Flechtenmacher, Christa and Winterfeld, Moritz von and K{\"o}hler, Bruno Christian and Springfeld, Christoph and Mehrabi, Arianeb and Singer, Stephan and Vogel, Monika Nadja and Neumann, Olaf and Stenzinger, Albrecht and Schirmacher, Peter and Weis, Cleo-Aron Thias and R{\"o}ssler, Stephanie and Kather, Jakob Nikolas and Goeppert, Benjamin}, title={Deep learning-enabled diagnosis of liver adenocarcinoma}, subtitle={original research}, year={2023}, pages={1262-1275}, language={eng}, issn={1528-0012}, volume={165}, number={5 vom: Nov.}, note={Online verf{\"u}gbar: 9. August 2023, Artikelversion: 19. Oktober 2023 ; Gesehen am 16.05.2024}, journal={Gastroenterology}, doi={10.1053/j.gastro.2023.07.026}, } @book{UBHD-69328993, editor={Mann, Ritse M. and Zhang, Tianyu and Tan, Tao and Han, Luyi and Truhn, Daniel and Li, Shuo and Gao, Yuan and Doyle, Shannon and Martí Marly, Robert and Kather, Jakob Nikolas and Pinker-Domenig, Katja and Wu, Shandong and Litjens, Geert}, title={Artificial Intelligence and Imaging for Diagnostic and Treatment Challenges in Breast Care}, subtitle={First Deep Breast Workshop, Deep-Breath 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 10, 2024, proceedings}, publisher={Springer International Publishing AG}, address={Cham}, year={2025}, pages={246 Seiten}, language={eng}, isbn={978-3-031-77788-2}, series={Lecture Notes in Computer Science}, } @book{UBHD-69328994, editor={Mann, Ritse M. and Zhang, Tianyu and Tan, Tao and Han, Luyi and Truhn, Daniel and Li, Shuo and Gao, Yuan and Doyle, Shannon and Martí Marly, Robert and Kather, Jakob Nikolas and Pinker-Domenig, Katja and Wu, Shandong and Litjens, Geert}, title={Artificial Intelligence and Imaging for Diagnostic and Treatment Challenges in Breast Care}, subtitle={First Deep Breast Workshop, Deep-Breath 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 10, 2024, proceedings}, edition={1st ed. 2025.}, publisher={Springer Nature Switzerland}, address={Cham}, year={2025}, pages={1 Online-Ressource (XI, 246 p. 78 illus., 68 illus. in color.)}, language={eng}, isbn={978-3-031-77789-9}, series={Lecture Notes in Computer Science ; 15451}, doi={10.1007/978-3-031-77789-9}, } @article{UBHD-69351828, author={Bereuter, Jean-Paul and Geißler, Mark Enrik and Klimova, Anna and Steiner, Robert-Patrick and Pfeiffer, Kevin and Kolbinger, Fiona and Wiest, Isabella and Muti, Hannah Sophie and Kather, Jakob Nikolas}, title={Benchmarking vision capabilities of large language models in surgical examination questions}, year={2025}, pages={1-11}, language={eng}, issn={1878-7452}, volume={82}, note={Online verf{\"u}gbar: 9. Februar 2025, Artikelversion: 9. Februar 2025 ; Gesehen am 03.06.2025}, journal={Journal of surgical education}, doi={10.1016/j.jsurg.2025.103442}, } @article{UBHD-68687486, author={Bianconi, Francesco and Kather, Jakob Nikolas and Reyes-Aldasoro, Constantino Carlos}, title={Experimental assessment of color deconvolution and color normalization for automated classification of histology images stained with hematoxylin and eosin}, year={2020}, language={eng}, issn={2072-6694}, volume={12(2020}, note={Gesehen am 02.02.2021}, journal={Cancers}, doi={10.3390/cancers12113337}, } @article{UBHD-69106120, author={Brinker, Titus Josef and Kiehl, Lennard and Schmitt, Max and Jutzi, Tanja and Krieghoff-Henning, Eva and Krahl, Dieter and Kutzner, Heinz and Gholam, Patrick and Haferkamp, Sebastian and Klode, Joachim and Schadendorf, Dirk and Hekler, Achim and Fr{\"o}hling, Stefan and Kather, Jakob Nikolas and Haggenm{\"u}ller, Sarah and Kalle, Christof von and Heppt, Markus V. and Hilke, Franz and Ghoreschi, Kamran and Tiemann, Markus and Wehkamp, Ulrike and Hauschild, Axel and Weichenthal, Michael and Utikal, Jochen}, title={Deep learning approach to predict sentinel lymph node status directly from routine histology of primary melanoma tumours}, year={2021}, pages={227-234}, language={eng}, issn={1879-0852}, volume={154(2021) vom: Sept.}, note={Available online 20 July 2021 ; Gesehen am 03.08.2023}, journal={European journal of cancer}, doi={10.1016/j.ejca.2021.05.026}, } @article{UBHD-69043402, author={Brinker, Titus Josef and Schmitt, Max and Krieghoff-Henning, Eva and Barnhill, Raymond and Beltraminelli, Helmut and Braun, Stephan A. and Carr, Richard and Fernandez-Figueras, Maria-Teresa and Ferrara, Gerardo and Fraitag, Sylvie and Gianotti, Raffaele and Llamas-Velasco, Mar and M{\"u}ller, Cornelia S. L. and Perasole, Antonio and Requena, Luis and Sangueza, Omar P. and Santonja, Carlos and Starz, Hans and Vale, Esmeralda and Weyers, Wolfgang and Hekler, Achim and Kather, Jakob Nikolas and Fr{\"o}hling, Stefan and Krahl, Dieter and Holland-Letz, Tim and Utikal, Jochen and Saggini, Andrea and Kutzner, Heinz}, title={Diagnostic performance of artificial intelligence for histologic melanoma recognition compared to 18 international expert pathologists}, year={2022}, pages={640-642}, language={eng}, issn={1097-6787}, volume={86}, number={3 vom: M{\"a}rz}, note={Gesehen am 20.02.2023}, journal={Journal of the American Academy of Dermatology}, doi={10.1016/j.jaad.2021.02.009}, } @article{UBHD-68929775, author={B{\"u}ndgens, Lukas and Cifci, Didem and Ghaffari Laleh, Narmin and van Treeck, Marko and Koenen, Maria T. and Zimmermann, Henning W. and Herbold, Till and Lux, Thomas Joachim and Hann, Alexander and Trautwein, Christian and Kather, Jakob Nikolas}, title={Weakly supervised end-to-end artificial intelligence in gastrointestinal endoscopy}, year={2022}, pages={1-13}, language={eng}, issn={2045-2322}, volume={12}, number={Artikel-ID 4829}, note={Gesehen am 12.06.2022}, journal={Scientific reports}, doi={10.1038/s41598-022-08773-1}, } @article{UBHD-69353275, author={Busch, Felix and Hoffmann, Lena and dos Santos, Daniel Pinto and Makowski, Marcus R. and Saba, Luca and Prucker, Philipp and Hadamitzky, Martin and Navab, Nassir and Kather, Jakob Nikolas and Truhn, Daniel and Cuocolo, Renato and Adams, Lisa C. and Bressem, Keno K.}, title={Large language models for structured reporting in radiology}, subtitle={past, present, and future}, year={2025}, pages={2589-2602}, language={eng}, issn={1432-1084 and 1613-3757}, volume={35}, number={5}, note={Gesehen am 03.06.2025}, journal={European radiology}, doi={10.1007/s00330-024-11107-6}, } @article{UBHD-69205998, author={Caldéraro, Julien and Ghaffari Laleh, Narmin and Zeng, Qinghe and Maille, Pascale and Favre, Loetitia and Pujals, Anaïs and Klein, Christophe and Bazille, Céline and Heij, Lara R. and Uguen, Arnaud and L{\"u}dde, Tom and Di Tommaso, Luca and Beaufrère, Aurélie and Chatain, Augustin and Gastineau, Delphine and Nguyen, Cong Trung and Nguyen-Canh, Hiep and Thi, Khuyen Nguyen and Gnemmi, Viviane and Graham, Rondell P. and Charlotte, Frédéric and Wendum, Dominique and Vij, Mukul and Allende, Daniela S. and Aucejo, Federico and Diaz, Alba and Rivière, Benjamin and Herrero, Astrid and Evert, Katja and Calvisi, Diego Francesco and Augustin, Jérémy and Leow, Wei Qiang and Leung, Howard Ho Wai and Boleslawski, Emmanuel and Rela, Mohamed and François, Arnaud and Cha, Anthony Wing-Hung and Forner, Alejandro and Reig, Maria and Allaire, Manon and Scatton, Olivier and Chatelain, Denis and Boulagnon-Rombi, Camille and Sturm, Nathalie and Menahem, Benjamin and Frouin, Eric and Tougeron, David and Tournigand, Christophe and Kempf, Emmanuelle and Kim, Haeryoung and Ningarhari, Massih and Michalak-Provost, Sophie and Gopal, Purva and Brustia, Raffaele and Vibert, Eric and Schulze, Kornelius and R{\"u}ther, Darius F. and Weidemann, S{\"o}ren A. and Rhaiem, Rami and Pawlotsky, Jean-Michel and Zhang, Xuchen and Luciani, Alain and Mulé, Sébastien and Laurent, Alexis and Amaddeo, Giuliana and Regnault, Hélène and De Martin, Eleonora and Sempoux, Christine and Navale, Pooja and Westerhoff, Maria and Lo, Regina Cheuk-Lam and Bednarsch, Jan and Gouw, Annette and Guettier, Catherine and Lequoy, Marie and Harada, Kenichi and Sripongpun, Pimsiri and Wetwittayaklang, Poowadon and Loménie, Nicolas and Tantipisit, Jarukit and Kaewdech, Apichat and Shen, Jeanne and Paradis, Valérie and Caruso, Stefano and Kather, Jakob Nikolas}, title={Deep learning-based phenotyping reclassifies combined hepatocellular-cholangiocarcinoma}, year={2023}, pages={1-10}, language={eng}, issn={2041-1723}, volume={14}, number={Artikel-ID 8290}, note={Gesehen am 19.04.2024}, journal={Nature Communications}, doi={10.1038/s41467-023-43749-3}, } @article{UBHD-69055515, author={Caldéraro, Julien and Di Tommaso, Luca and Maillé, Pascale and Beaufrère, Aurélie and Nguyen, Cong Trung and Heij, Lara and Gnemmi, Viviane and Graham, Rondell P. and Charlotte, Frédéric and Chartier, Suzanne and Wendum, Dominique and Vij, Mukul and Allende, Daniela and Diaz, Alba and Fuster, Carla and Rivière, Benjamin and Herrero, Astrid and Augustin, Jérémy and Evert, Katja and Calvisi, Diego Francesco and Leow, Wei Qiang and Leung, Howard Ho Wai and Bednarsch, Jan and Boleslawski, Emmanuel and Rela, Mohamed and Chan, Anthony Wing-Hung and Forner, Alejandro and Reig, Maria and Pujals, Anaïs and Favre, Loetitia and Allaire, Manon and Scatton, Olivier and Uguen, Arnaud and Trépo, Eric and Sanchez, Lukas Otero and Chatelain, Denis and Remmelink, Myriam and Boulagnon-Rombi, Camille and Bazille, Céline and Sturm, Nathalie and Menahem, Benjamin and Frouin, Eric and Tougeron, David and Tournigand, Christophe and Kempf, Emmanuelle and Kim, Haeryoung and Ningarhari, Massih and Michalak-Provost, Sophie and Kather, Jakob Nikolas and Gouw, Annette S. H. and Gopal, Purva and Brustia, Raffaele and Vibert, Eric and Schulze, Kornelius and R{\"u}ther, Darius F. and Weidemann, S{\"o}ren A. and Rhaiem, Rami and Nault, Jean-Charles and Laurent, Alexis and Amaddeo, Giuliana and Regnault, Hélène and de Martin, Eleonora and Sempoux, Christine and Navale, Pooja and Shinde, Jayendra and Bacchuwar, Ketan and Westerhoff, Maria and Lo, Regina Cheuk-Lam and Sebbagh, Mylène and Guettier, Catherine and Lequoy, Marie and Komuta, Mina and Ziol, Marianne and Paradis, Valérie and Shen, Jeanne and Caruso, Stefano}, title={Nestin as a diagnostic and prognostic marker for combined hepatocellular-cholangiocarcinoma}, year={2022}, pages={1586-1597}, language={eng}, issn={1600-0641}, volume={77}, number={6 vom: Nov.}, note={Online verf{\"u}gbar 18 August 2022, Aritkelversion 15 November 2022 ; Gesehen am 24.03.2023}, journal={Journal of hepatology}, doi={10.1016/j.jhep.2022.07.019}, } @article{UBHD-69328666, author={Carl, Nicolas and Nguyen, Lisa and Haggenm{\"u}ller, Sarah and Hetz, Martin Joachim and Winterstein, Jana Theres and Hartung, Friedrich and Gr{\"u}ne, Britta and Kather, Jakob Nikolas and Holland-Letz, Tim and Michel, Maurice Stephan and Wessels, Frederik and Brinker, Titus Josef}, title={Comparing patient’s confidence in clinical capabilities in urology}, subtitle={large language models versus urologists : education}, year={2024}, pages={91-98}, language={eng}, issn={2666-1683}, volume={70(2024) vom: Dez.}, note={Online verf{\"u}gbar: 23. Oktober 2024, Artikelversion: 23. Oktober 2024 ; Gesehen am 07.04.2025}, journal={European urology open science}, doi={10.1016/j.euros.2024.10.009}, } @article{UBHD-69328475, author={Carl, Nicolas and Schramm, Franziska and Haggenm{\"u}ller, Sarah and Kather, Jakob Nikolas and Hetz, Martin J. and Wies, Christoph and Michel, Maurice Stephan and Wessels, Frederik and Brinker, Titus Josef}, title={Large language model use in clinical oncology}, year={2024}, pages={1-17}, language={eng}, issn={2397-768X}, volume={8}, note={Gesehen am 07.04.2025}, journal={npj precision oncology}, doi={10.1038/s41698-024-00733-4}, } @article{UBHD-69077845, author={Cifci, Didem and Veldhuizen, Gregory P. and Foersch, Sebastian and Kather, Jakob Nikolas}, title={AI in computational pathology of cancer}, subtitle={improving diagnostic workflows and clinical outcomes?}, year={2023}, pages={57-71}, language={eng}, issn={2472-3428}, volume={7(2023) vom: Jan.}, note={Gesehen am 22.05.2023}, journal={Annual review of cancer biology}, doi={10.1146/annurev-cancerbio-061521-092038}, } @article{UBHD-68951592, author={Echle, Amelie and Ghaffari Laleh, N. and Quirke, P. and Grabsch, H. I. and Muti, H. S. and Saldanha, O. L. and Brockmoeller, S. F. and van den Brandt, P. A. and Hutchins, G. G. A. and Richman, S. D. and Horisberger, K. and Galata, Christian and Ebert, Matthias and Eckardt, Maximilian and Boutros, Michael and Horst, D. and Reißfelder, Christoph and Alwers, E. and Brinker, T. J. and Langer, R. and Jenniskens, J. C. A. and Offermans, K. and Mueller, W. and Gray, R. and Gruber, S. B. and Greenson, J. K. and Rennert, G. and Bonner, J. D. and Schmolze, D. and Chang-Claude, Jenny and Brenner, Hermann and Trautwein, C. and Boor, P. and Jaeger, D. and Gaisa, Nadine and Hoffmeister, Michael and West, N. P. and Kather, Jakob Nikolas}, title={Artificial intelligence for detection of microsatellite instability in colorectal cancer - a multicentric analysis of a pre-screening tool for clinical application}, year={2022}, pages={1-16}, language={eng}, issn={2059-7029}, volume={7}, note={Gesehen am 09.08.2022}, journal={ESMO open}, doi={10.1016/j.esmoop.2022.100400}, } @article{UBHD-68676452, author={Echle, Amelie and Grabsch, Heike Irmgard and Quirke, Philip and van den Brandt, Piet A. and West, Nicholas P. and Hutchins, Gordon G. A. and Heij, Lara R. and Tan, Xiuxiang and Richman, Susan D. and Krause, Jeremias and Alwers, Elizabeth and Jenniskens, Josien and Offermans, Kelly and Gray, Richard and Brenner, Hermann and Chang-Claude, Jenny and Trautwein, Christian and Pearson, Alexander T. and Boor, Peter and Luedde, Tom and Gaisa, Nadine Therese and Hoffmeister, Michael and Kather, Jakob Nikolas}, title={Clinical-grade detection of microsatellite instability in colorectal tumors by deep learning}, year={2020}, pages={1406-1416.e11}, language={eng}, issn={1528-0012}, volume={159}, number={4}, note={Gesehen am 04.01.2021}, journal={Gastroenterology}, doi={10.1053/j.gastro.2020.06.021}, } @article{UBHD-69197868, author={Echle, Amelie and Rindtorff, Niklas and Brinker, Titus Josef and L{\"u}dde, Tom and Pearson, Alexander Thomas and Kather, Jakob Nikolas}, title={Deep learning in cancer pathology}, subtitle={a new generation of clinical biomarkers}, year={2021}, pages={686-696}, language={eng}, issn={1532-1827}, volume={124}, number={4}, note={Online ver{\"o}ffentlicht: 18. November 2020 ; Gesehen am 05.04.2024}, journal={British journal of cancer}, doi={10.1038/s41416-020-01122-x}, } @article{UBHD-69358915, author={El Nahhas, Omar S. M. and Treeck, Marko van and W{\"o}lflein, Georg and Unger, Michaela and F{\"o}rsch, Sebastian and Lenz, Tim and Wagner, Sophia J. and Hewitt, Katherine J. and Khader, Firas and F{\"o}rsch, Sebastian and Truhn, Daniel and Kather, Jakob Nikolas}, title={From whole-slide image to biomarker prediction}, subtitle={end-to-end weakly supervised deep learning in computational pathology}, year={2025}, pages={293-316}, language={eng}, issn={1750-2799}, volume={20}, number={1 vom: Jan.}, note={Ver{\"o}ffentlicht: 16. September 2024 ; Gesehen am 24.06.2025}, journal={Nature protocols}, doi={10.1038/s41596-024-01047-2}, } @article{UBHD-69253288, author={El Nahhas, Omar S. M. and Loeffler, Chiara M. L. and Carrero, Zunamys I. and van Treeck, Marko and Kolbinger, Fiona and Hewitt, Katherine J. and Muti, Hannah S. and Graziani, Mara and Zeng, Qinghe and Calderaro, Julien and Ortiz-Br{\"u}chle, Nadina and Yuan, Tanwei and Hoffmeister, Michael and Brenner, Hermann and Brobeil, Alexander and Reis-Filho, Jorge S. and Kather, Jakob Nikolas}, title={Regression-based Deep-Learning predicts molecular biomarkers from pathology slides}, year={2024}, pages={1-13}, language={eng}, issn={2041-1723}, volume={15}, number={Artikel-ID 1253}, note={Gesehen am 13.09.2024}, journal={Nature Communications}, doi={10.1038/s41467-024-45589-1}, } @article{UBHD-68404464, author={Elßner, Christin and Goeppert, Benjamin and Longerich, Thomas and Scherr, Anna-Lena and Rupp, Christian and Kather, Jakob Nikolas and Kautz, Nicole and Breuhahn, Kai and Gdynia, Georg and R{\"o}ssler, Stephanie and Schirmacher, Peter and J{\"a}ger, Dirk and Sch{\"o}lch, Sebastian and K{\"o}hler, Bruno Christian}, title={Nuclear translocation of RELB is increased in diseased human liver and promotes ductular reaction and biliary fibrosis in mice}, year={2019}, pages={30 S.}, language={eng}, issn={1528-0012}, volume={156(2019}, note={Available online 13 November 2018 ; Gesehen am 04.07.2019}, journal={Gastroenterology}, doi={10.1053/j.gastro.2018.11.018}, } @article{UBHD-68990222, author={El Wajeh, Mohammad and Jung, Falco and Bongartz, Dominik and Kappatou, Chrysoula Dimitra and Ghaffari Laleh, Narmin and Mitsos, Alexander and Kather, Jakob Nikolas}, title={Can the Kuznetsov model replicate and predict cancer growth in humans?}, year={2022}, pages={1-26}, language={eng}, issn={1522-9602}, volume={84}, note={Gesehen am 29.11.2022}, journal={Bulletin of mathematical biology}, doi={10.1007/s11538-022-01075-7}, } @article{UBHD-69339511, author={Ferber, Dyke and W{\"o}lflein, Georg and Wiest, Isabella and Ligero, Marta and Sainath, Srividhya and Ghaffari Laleh, Narmin and El Nahhas, Omar S. M. and M{\"u}ller-Franzes, Gustav and J{\"a}ger, Dirk and Truhn, Daniel and Kather, Jakob Nikolas}, title={In-context learning enables multimodal large language models to classify cancer pathology images}, year={2024}, pages={1-12}, language={eng}, issn={2041-1723}, volume={15}, number={Artikel-ID 10104}, note={Gesehen am 28.04.2025}, journal={Nature Communications}, doi={10.1038/s41467-024-51465-9}, } @article{UBHD-69236349, author={Ferber, Dyke and Kather, Jakob Nikolas}, title={Large language models in uro-oncology}, year={2024}, pages={157-159}, language={eng}, issn={2588-9311}, volume={7}, number={1 vom: Feb.}, note={Online ver{\"o}ffentlicht: 14 October 2023 ; Gesehen am 22.07.2024}, journal={European urology oncology}, doi={10.1016/j.euo.2023.09.019}, } @article{UBHD-69261585, author={Freyer, Oscar and Wiest, Isabella and Kather, Jakob Nikolas and Gilbert, Stephen}, title={A future role for health applications of large language models depends on regulators enforcing safety standards}, year={2024}, pages={e662-e672}, language={eng}, issn={2589-7500}, volume={6}, number={9 vom: Sept.}, note={Online verf{\"u}gbar: 21. August 2024 ; Gesehen am 11.10.2024}, journal={The lancet}, doi={10.1016/S2589-7500(24)00124-9}, } @incollection{UBHD-69199529, author={Galdran, Adrian and Hewitt, Katherine J. and Ghaffari Laleh, Narmin and Kather, Jakob Nikolas and Carneiro, Gustavo and Ballester, Miguel A. González}, title={Test time transform prediction for open set histopathological image recognition}, year={2022}, pages={263-272}, language={eng}, isbn={9783031164330}, journal={International Conference on Medical Image Computing and Computer Assisted Intervention (25. : 2022 : Singapur; Online)Medical image computing and computer assisted intervention - MICCAI 2022 ; Part 2}, editor={Wang, Linwei and Dou, Qi and Fletcher, P. Thomas and Speidel, Stefanie and Li, Shuo}, } @article{UBHD-69329177, author={Geißler, Mark Enrik and Goeben, Merle and Glasmacher, Kira A. and Bereuter, Jean-Paul and Geissler, Rona Berit and Wiest, Isabella and Kolbinger, Fiona R. and Kather, Jakob Nikolas}, title={The performance of artificial intelligence on a national medical licensing examination}, subtitle={the answers of large language models to text questions : research letter: medicine}, year={2024}, pages={888-889}, language={eng}, issn={1866-0452}, volume={121}, number={26 vom: Dez.}, note={Gesehen am 08.04.2025}, journal={Deutsches {\"A}rzteblatt international}, doi={10.3238/arztebl.m2024.0231}, } @article{UBHD-69007663, author={Ghaffari Laleh, Narmin and Truhn, Daniel and Veldhuizen, Gregory Patrick and Han, Tianyu and van Treeck, Marko and Buelow, Roman D. and Langer, Rupert and Dislich, Bastian and Boor, Peter and Schulz, Volkmar and Kather, Jakob Nikolas}, title={Adversarial attacks and adversarial robustness in computational pathology}, year={2022}, pages={1-10}, language={eng}, issn={2041-1723}, volume={13(2022) vom: Sept.}, number={Artikel-ID 5711}, note={Gesehen am 18.01.2023}, journal={Nature Communications}, doi={10.1038/s41467-022-33266-0}, } @article{UBHD-69010102, author={Ghaffari Laleh, Narmin and Muti, Hannah Sophie and Loeffler, Chiara Maria Lavinia and Echle, Amelie and Saldanha, Oliver Lester and Mahmood, Faisal and Lu, Ming Y. and Trautwein, Christian and Langer, Rupert and Dislich, Bastian and Buelow, Roman D. and Grabsch, Heike Irmgard and Brenner, Hermann and Chang-Claude, Jenny and Alwers, Elizabeth and Brinker, Titus Josef and Khader, Firas and Truhn, Daniel and Gaisa, Nadine T. and Boor, Peter and Hoffmeister, Michael and Schulz, Volkmar and Kather, Jakob Nikolas}, title={Erratum to "Benchmarking weakly-supervised deep learning pipelines for whole slide classification in computational pathology"}, subtitle={Medical image analysis, Volume 79, July 2022, 102474}, year={2022}, pages={[1]}, language={eng}, issn={1361-8423}, volume={Volume 82}, number={102622}, note={Available online 18 September 2022, version of record 18 September 2022 ; Gesehen am 25.01.2023}, journal={Medical image analysis}, doi={10.1016/j.media.2022.102622}, } @article{UBHD-69055981, author={Ghaffari Laleh, Narmin and Ligero, Marta and Perez-Lopez, Raquel and Kather, Jakob Nikolas}, title={Facts and hopes on the use of artificial intelligence for predictive immunotherapy biomarkers in cancer}, year={2023}, pages={316-323}, language={eng}, issn={1557-3265}, volume={29}, number={2}, note={Online ver{\"o}ffentlicht am 9. September 2022 ; Gesehen am 28.11.2023}, journal={Clinical cancer research}, doi={10.1158/1078-0432.CCR-22-0390}, } @article{UBHD-69276193, author={Gustav, Marco and Reitsam, Nic Gabriel and Carrero, Zunamys I. and Loeffler, Chiara M. L. and van Treeck, Marko and Yuan, Tanwei and West, Nicholas P. and Quirke, Philip and Brinker, Titus Josef and Brenner, Hermann and Favre, Loëtitia and M{\"a}rkl, Bruno and Stenzinger, Albrecht and Brobeil, Alexander and Hoffmeister, Michael and Calderaro, Julien and Pujals, Anaïs and Kather, Jakob Nikolas}, title={Deep learning for dual detection of microsatellite instability and POLE mutations in colorectal cancer histopathology}, year={2024}, pages={1-11}, language={eng}, issn={2397-768X}, volume={8}, note={Gesehen am 25.11.2024}, journal={npj precision oncology}, doi={10.1038/s41698-024-00592-z}, } @article{UBHD-69227233, author={Haggenm{\"u}ller, Sarah and Schmitt, Max and Krieghoff-Henning, Eva and Hekler, Achim and Maron, Roman C. and Wies, Christoph and Utikal, Jochen and Meier, Friedegund and Hobelsberger, Sarah and Gellrich, Frank F. and Sergon, Mildred and Hauschild, Axel and French, Lars E. and Heinzerling, Lucie and Schlager, Justin G. and Ghoreschi, Kamran and Schlaak, Max and Hilke, Franz J. and Poch, Gabriela and Korsing, S{\"o}ren and Berking, Carola and Heppt, Markus V. and Erdmann, Michael and Haferkamp, Sebastian and Drexler, Konstantin and Schadendorf, Dirk and Sondermann, Wiebke and Goebeler, Matthias and Schilling, Bastian and Kather, Jakob Nikolas and Fr{\"o}hling, Stefan and Brinker, Titus Josef}, title={Federated learning for decentralized artificial intelligence in melanoma diagnostics}, year={2024}, pages={303-311}, language={eng}, issn={2168-6084}, volume={160}, number={3}, note={Online ver{\"o}ffentlicht: 7. Februar 2024 ; Gesehen am 28.06.2024}, journal={JAMA dermatology}, doi={10.1001/jamadermatol.2023.5550}, } @article{UBHD-69305543, author={Haggenm{\"u}ller, Sarah and Maron, Roman C. and Hekler, Achim and Krieghoff-Henning, Eva and Utikal, Jochen and Gaiser, Maria and M{\"u}ller, Verena and Fabian, Sascha and Meier, Friedegund and Hobelsberger, Sarah and Gellrich, Frank F. and Sergon, Mildred and Hauschild, Axel and Weichenthal, Michael and French, Lars E. and Heinzerling, Lucie and Schlager, Justin G. and Ghoreschi, Kamran and Schlaak, Max and Hilke, Franz J. and Poch, Gabriela and Korsing, S{\"o}ren and Berking, Carola and Heppt, Markus V. and Erdmann, Michael and Haferkamp, Sebastian and Drexler, Konstantin and Schadendorf, Dirk and Sondermann, Wiebke and Goebeler, Matthias and Schilling, Bastian and Kather, Jakob Nikolas and Fr{\"o}hling, Stefan and Kaminski, Katharina and Doppler, Astrid and Bucher, Tabea and Brinker, Titus Josef and Garcia, Carina Nogueira and Thamm, Janis and Schuh, Sandra and Welzel, Julia and Maul-Duwendag, Lara Valeska and Georg, Paul and Feldmeyer, Laurence and Bechara, Falk and Steininger, Julian and Lehr, Sophia and Rauschenberg, Ricarda and Eberle, Anna-Lisa and Hartmann, S{\"o}ren Manfred and Hasler, Helena and Bender-S{\"a}belkampf, Sophia and Bauerschmitz, J{\"u}rgen P. and Kaufmann, Matthias and Erfurt-Berge, Cornelia and Peitsch, Wiebke Katharina and Wehkamp, Ulrike and Jost, Marion and Franklin, Cindy and Holzgruber, Julia and Haist, Maximilian and Giulini, Mario and Wohlfeil, Sebastian A. and Faihs, Valentina and Sattler, Elke and St{\"u}rmer, Suzan and Krammer, Sebastian and Kendziora, Benjamin and Akcetin, Semra Larissa and Mitwalli, Mohammed and Avci, Pinar and Fiocco, Zeno and Hartmann, Daniela and Fernandes Lobo Pereira, Manuel Pedro and Thiem, Alexander and Aebischer, Valentin and Forchhammer, Stephan and Wolff, Isabel}, title={Patients’ and dermatologists’ preferences in artificial intelligence-driven skin cancer diagnostics}, subtitle={a prospective multicentric survey study}, year={2024}, pages={366-370}, language={eng}, issn={1097-6787}, volume={91}, number={2 vom: Aug.}, note={Collaborators: Carina Nogueira Garcia, Janis Thamm, Sandra Schuh, Julia Welzel, Lara Valeska Maul-Duwendag, Paul Georg, Laurence Feldmeyer, Falk Bechara, Julian Steininger, Sophia Lehr, Ricarda Rauschenberg, Anna-Lisa Eberle, S{\"o}ren Manfred Hartmann, Helena Hasler, Sophia Bender-S{\"a}belkampf, J{\"u}rgen P. Bauerschmitz, Matthias Kaufmann, Cornelia Erfurt-Berge, Wiebke Katharina Peitsch, Ulrike Wehkamp, Marion Jost, Cindy Franklin, Julia Holzgruber, Maximilian Haist, Mario Giulini, Sebastian Wohlfeil, Valentina Faihs, Elke Sattler, Suzan St{\"u}rmer, Sebastian Krammer, Benjamin Kendziora, Semra Larissa Akcetin, Mohammed Mitwalli, Pinar Avci, Zeno Fiocco, Daniela Hartmann, Manuel Pedro Fernandes Lobo Pereira, Alexander Thiem, Valentin Aebischer, Stephan Forchhammer, Isabel Wolff ; Gesehen am 18.02.2025}, journal={Journal of the American Academy of Dermatology}, doi={10.1016/j.jaad.2024.04.033}, } @article{UBHD-68805589, author={Haggenm{\"u}ller, Sarah and Maron, Roman C. and Hekler, Achim and Utikal, Jochen and Barata, Catarina and Barnhill, Raymond L. and Beltraminelli, Helmut and Berking, Carola and Betz-Stablein, Brigid and Blum, Andreas and Braun, Stephan A. and Carr, Richard and Combalia, Marc and Fernandez-Figueras, Maria-Teresa and Ferrara, Gerardo and Fraitag, Sylvie and French, Lars E. and Gellrich, Frank F. and Ghoreschi, Kamran and Goebeler, Matthias and Guitera, Pascale and H{\"a}nßle, Holger and Haferkamp, Sebastian and Heinzerling, Lucie and Heppt, Markus V. and Hilke, Franz J. and Hobelsberger, Sarah and Krahl, Dieter and Kutzner, Heinz and Lallas, Aimilios and Liopyris, Konstantinos and Llamas-Velasco, Mar and Malvehy, Josep and Meier, Friedegund and M{\"u}ller, Cornelia S. L. and Navarini, Alexander A. and Navarrete-Dechent, Cristián and Perasole, Antonio and Poch, Gabriela and Podlipnik, Sebastian and Requena, Luis and Rotemberg, Veronica M. and Saggini, Andrea and Sangueza, Omar P. and Santonja, Carlos and Schadendorf, Dirk and Schilling, Bastian and Schlaak, Max and Schlager, Justin G. and Sergon, Mildred and Sondermann, Wiebke and Soyer, H. Peter and Starz, Hans and Stolz, Wilhelm and Vale, Esmeralda and Weyers, Wolfgang and Zink, Alexander Gustav Stefan and Krieghoff-Henning, Eva and Kather, Jakob Nikolas and Kalle, Christof von and Lipka, Daniel and Fr{\"o}hling, Stefan and Hauschild, Axel and Kittler, Harald and Brinker, Titus Josef}, title={Skin cancer classification via convolutional neural networks}, subtitle={systematic review of studies involving human experts}, year={2021}, pages={202-216}, language={eng}, issn={1879-0852}, volume={156}, note={Gesehen am 26.11.2021}, journal={European journal of cancer}, doi={10.1016/j.ejca.2021.06.049}, } @article{UBHD-69007792, author={Han, Tianyu and Kather, Jakob Nikolas and Pedersoli, Federico and Zimmermann, Markus and Keil, Sebastian and Schulze-Hagen, Maximilian and Terwoelbeck, Marc and Isfort, Peter and Haarburger, Christoph and Kiessling, Fabian and Kuhl, Christiane and Schulz, Volkmar and Nebelung, Sven and Truhn, Daniel}, title={Image prediction of disease progression for osteoarthritis by style-based manifold extrapolation}, year={2022}, pages={1029-1039}, language={eng}, issn={2522-5839}, volume={4}, number={11}, note={Gesehen am 18.01.2023}, journal={Nature machine intelligence}, doi={10.1038/s42256-022-00560-x}, } @article{UBHD-69338238, author={Han, Tianyu and Nebelung, Sven and Khader, Firas and Wang, Tianci and M{\"u}ller-Franzes, Gustav and Kuhl, Christiane and F{\"o}rsch, Sebastian and Kleesiek, Jens Philipp and Haarburger, Christoph and Bressem, Keno K. and Kather, Jakob Nikolas and Truhn, Daniel}, title={Medical large language models are susceptible to targeted misinformation attacks}, year={2024}, pages={1-9}, language={eng}, issn={2398-6352}, volume={7}, number={Artikel-ID 288}, note={Gesehen am 23.04.2025}, journal={npj digital medicine}, doi={10.1038/s41746-024-01282-7}, } @article{UBHD-69331687, author={Han, Tianyu and Žigutytė, Laura and Huck, Luisa and Huppertz, Marc Sebastian and Siepmann, Robert and Gandelsman, Yossi and Bl{\"u}thgen, Christian and Khader, Firas and Kuhl, Christiane and Nebelung, Sven and Kather, Jakob Nikolas and Truhn, Daniel}, title={Reconstruction of patient-specific confounders in AI-based radiologic image interpretation using generative pretraining}, year={2024}, pages={e1-e6}, language={eng}, issn={2666-3791}, volume={Volume 5}, note={Gesehen am 16.04.2025}, journal={Cell reports}, doi={10.1016/j.xcrm.2024.101713}, } @article{UBHD-68934872, author={Hauser, Katja and Kurz, Alexander and Haggenm{\"u}ller, Sarah and Maron, Roman C. and Kalle, Christof von and Utikal, Jochen and Meier, Friedegund and Hobelsberger, Sarah and Gellrich, Frank F. and Sergon, Mildred and Hauschild, Axel and French, Lars E. and Heinzerling, Lucie and Schlager, Justin G. and Ghoreschi, Kamran and Schlaak, Max and Hilke, Franz J. and Poch, Gabriela and Kutzner, Heinz and Berking, Carola and Heppt, Markus V. and Erdmann, Michael and Haferkamp, Sebastian and Schadendorf, Dirk and Sondermann, Wiebke and Goebeler, Matthias and Schilling, Bastian and Kather, Jakob Nikolas and Fr{\"o}hling, Stefan and Lipka, Daniel and Hekler, Achim and Krieghoff-Henning, Eva and Brinker, Titus Josef}, title={Explainable artificial intelligence in skin cancer recognition}, subtitle={a systematic review}, year={2022}, pages={54-69}, language={eng}, issn={1879-0852}, volume={167}, note={Available online 5 April 2022 ; Gesehen am 27.06.2022}, journal={European journal of cancer}, doi={10.1016/j.ejca.2022.02.025}, } @article{UBHD-68722194, author={Hekler, Achim and Kather, Jakob Nikolas and Krieghoff-Henning, Eva and Utikal, Jochen and Meier, Friedegund and Gellrich, Frank Friedrich and Belzen, Julius Upmeier zu and French, Lars E. and Schlager, Justin Gabriel and Ghoreschi, Kamran and Wilhelm, Tabea and Kutzner, Heinz and Berking, Carola and Heppt, Markus V. and Haferkamp, Sebastian and Sondermann, Wiebke and Schadendorf, Dirk and Schilling, Bastian and Izar, Benjamin and Maron, Roman C. and Schmitt, Max and Fr{\"o}hling, Stefan and Lipka, Daniel and Brinker, Titus Josef}, title={Effects of label noise on deep learning-based skin cancer classification}, year={2020}, pages={7 S.}, language={eng}, issn={2296-858X}, volume={Bd. 7.2020}, journal={Frontiers in medicine}, doi={10.3389/fmed.2020.00177}, } @article{UBHD-69285277, author={Hekler, Achim and Maron, Roman C. and Haggenm{\"u}ller, Sarah and Schmitt, Max and Wies, Christoph and Utikal, Jochen and Meier, Friedegund and Hobelsberger, Sarah and Gellrich, Frank F. and Sergon, Mildred and Hauschild, Axel and French, Lars E. and Heinzerling, Lucie and Schlager, Justin G. and Ghoreschi, Kamran and Schlaak, Max and Hilke, Franz J. and Poch, Gabriela and Korsing, S{\"o}ren and Berking, Carola and Heppt, Markus V. and Erdmann, Michael and Haferkamp, Sebastian and Drexler, Konstantin and Schadendorf, Dirk and Sondermann, Wiebke and Goebeler, Matthias and Schilling, Bastian and Kather, Jakob Nikolas and Krieghoff-Henning, Eva and Brinker, Titus Josef}, title={Using multiple real-world dermoscopic photographs of one lesion improves melanoma classification via deep learning}, year={2024}, pages={1028-1031}, language={eng}, issn={1097-6787}, volume={90}, number={5}, note={Online verf{\"u}gbar: 8. Januar 2024, Artikelversion: 11. April 2024 ; Gesehen am 18.12.2024}, journal={Journal of the American Academy of Dermatology}, doi={10.1016/j.jaad.2023.11.065}, } @article{UBHD-69339199, author={Hewitt, Katherine J. and Wiest, Isabella and Carrero, Zunamys I and Bejan, Laura and Millner, Thomas O. and Brandner, Sebastian and Kather, Jakob Nikolas}, title={Large language models as a diagnostic support tool in neuropathology}, year={2024}, pages={1-7}, language={eng}, issn={2056-4538}, volume={10}, note={Online ver{\"o}ffentlicht: 06 November 2024 ; Gesehen am 25.04.2025}, journal={The journal of pathology: clinical research}, doi={10.1002/2056-4538.70009}, } @article{UBHD-68759543, author={H{\"o}hn, Julia and Krieghoff-Henning, Eva and Jutzi, Tanja and Kalle, Christof von and Utikal, Jochen and Meier, Friedegund and Gellrich, Frank F. and Hobelsberger, Sarah and Hauschild, Axel and Schlager, Justin G. and French, Lars and Heinzerling, Lucie and Schlaak, Max and Ghoreschi, Kamran and Hilke, Franz J. and Poch, Gabriela and Kutzner, Heinz and Heppt, Markus V. and Haferkamp, Sebastian and Sondermann, Wiebke and Schadendorf, Dirk and Schilling, Bastian and Goebeler, Matthias and Hekler, Achim and Fr{\"o}hling, Stefan and Lipka, Daniel and Kather, Jakob Nikolas and Krahl, Dieter and Ferrara, Gerardo and Haggenm{\"u}ller, Sarah and Brinker, Titus Josef}, title={Combining CNN-based histologic whole slide image analysis and patient data to improve skin cancer classification}, year={2021}, pages={94-101}, language={eng}, issn={1879-0852}, volume={149(2021) vom: Mai}, note={Gesehen am 13.07.2021}, journal={European journal of cancer}, doi={10.1016/j.ejca.2021.02.032}, } @article{UBHD-68789235, author={H{\"o}hn, Julia and Hekler, Achim and Krieghoff-Henning, Eva and Kather, Jakob Nikolas and Utikal, Jochen and Meier, Friedegund and Gellrich, Frank Friedrich and Hauschild, Axel and French, Lars E. and Schlager, Justin Gabriel and Ghoreschi, Kamran and Wilhelm, Tabea and Kutzner, Heinz and Heppt, Markus V. and Haferkamp, Sebastian and Sondermann, Wiebke and Schadendorf, Dirk and Schilling, Bastian and Maron, Roman C. and Schmitt, Max and Jutzi, Tanja and Fr{\"o}hling, Stefan and Lipka, Daniel and Brinker, Titus Josef}, title={Integrating patient data into skin cancer classification using convolutional neural networks}, subtitle={systematic review}, year={2021}, pages={1-14}, language={eng}, issn={1438-8871}, volume={23}, note={Gesehen am 12.10.2021}, journal={Journal of medical internet research}, doi={10.2196/20708}, } @article{UBHD-68787565, author={Howard, Frederick and Dolezal, James and Kochanny, Sara and Schulte, Jefree and Chen, Heather and Heij, Lara and Huo, Dezheng and Nanda, Rita and Olopade, Olufunmilayo I. and Kather, Jakob Nikolas and Cipriani, Nicole and Grossman, Robert L. and Pearson, Alexander T.}, title={The impact of site-specific digital histology signatures on deep learning model accuracy and bias}, year={2021}, pages={1-13}, language={eng}, issn={2041-1723}, volume={12}, number={Artikel-ID 4423}, note={Gesehen am 07.10.2021}, journal={Nature Communications}, doi={10.1038/s41467-021-24698-1}, } @article{UBHD-69213504, author={Jiang, Xiaofeng and Hoffmeister, Michael and Brenner, Hermann and Muti, Hannah Sophie and Yuan, Tanwei and Foersch, Sebastian and West, Nicholas P and Brobeil, Alexander and Jonnagaddala, Jitendra and Hawkins, Nicholas and Ward, Robyn L and Brinker, Titus Josef and Saldanha, Oliver Lester and Ke, Jia and M{\"u}ller, Wolfram and Grabsch, Heike I and Quirke, Philip and Truhn, Daniel and Kather, Jakob Nikolas}, title={End-to-end prognostication in colorectal cancer by deep learning}, subtitle={a retrospective, multicentre study}, year={2024}, pages={e33-e43}, language={eng}, issn={2589-7500}, volume={6}, number={1 vom: Jan.}, note={Online verf{\"u}gbar: 18. Dezember 2023 ; Gesehen am 14.05.2024}, journal={The lancet}, doi={10.1016/S2589-7500(23)00208-X}, } @article{UBHD-67908196, author={Kather, Jakob Nikolas and Friedrich, Julian and Sticht, Carsten and Gretz, Norbert and Hammes, Hans-Peter and Kroll, Jens}, title={Angiopoietin-1 is regulated by miR-204 and contributes to corneal neovascularization in KLEIP-deficient mice}, year={2014}, pages={4295-4303}, language={eng}, issn={1552-5783}, volume={55}, number={7}, note={Gesehen am: 26.11.2015}, journal={Investigative ophthalmology & visual science}, doi={10.1167/iovs.13-13619}, } @article{UBHD-68428704, author={Kather, Jakob Nikolas and H{\"o}rner, Christian and Weis, Cleo-Aron Thias and Aung, Thiha and Vokuhl, Christian and Weiß, Christel and Scheer, Monika and Marx, Alexander and Simon-Keller, Katja}, title={CD163+ immune cell infiltrates and presence of CD54+ microvessels are prognostic markers for patients with embryonal rhabdomyosarcoma}, year={2019}, pages={12 S.}, language={eng}, issn={2045-2322}, volume={9(2019) Artikel-Nummer 9211}, number={12 Seiten}, note={Gesehen am 10.09.2019}, journal={Scientific reports}, doi={10.1038/s41598-019-45551-y}, } @book{UBHD-68049139, author={Kather, Jakob Nikolas}, title={Characterization of pathological angiogenesis in the KLEIP knockout mouse model}, address={Heidelberg}, year={2014}, pages={135 Bl{\"a}tter}, language={eng}, school={Dissertation, Ruprecht-Karls-Universit{\"a}t Heidelberg, 2016}, library={UB [Signatur: 2016 U 968] ; UW [Signatur: Diss. 16.169]}, } @article{UBHD-68082496, author={Kather, Jakob Nikolas and Weidner, Anja and Attenberger, Ulrike and Weis, Cleo-Aron Thias and Weis, Meike and Schad, Lothar R. and Z{\"o}llner, Frank G.}, title={Color-coded visualization of magnetic resonance imaging multiparametric maps}, year={2017}, language={eng}, issn={2045-2322}, volume={7(2017) Artikel-Nummer 41107}, number={11 Seiten}, note={Gesehen am 09.02.2017}, journal={Scientific reports}, doi={10.1038/srep41107}, url={http://dx.doi.org/10.1038/srep41107}, library={UB}, } @article{UBHD-68223448, author={Kather, Jakob Nikolas and Marx, Alexander and Schad, Lothar R. and Z{\"o}llner, Frank G. and Weis, Cleo-Aron Thias}, title={Continuous representation of tumor microvessel density and detection of angiogenic hotspots in histological whole-slide images}, year={2015}, pages={19163-19176}, language={eng}, issn={1949-2553}, volume={6}, number={22}, note={Gesehen am 23.02.2018}, journal={OncoTarget}, doi={10.18632/oncotarget.4383}, } @article{UBHD-68420593, author={Kather, Jakob Nikolas and Halama, Niels and J{\"a}ger, Dirk and Marx, Alexander and Brenner, Hermann and Chang-Claude, Jenny and Hoffmeister, Michael}, title={Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer}, year={2019}, pages={10 S.}, language={eng}, issn={1546-170X}, volume={25}, note={Gesehen am 14.08.2019}, journal={Nature medicine}, doi={10.1038/s41591-019-0462-y}, } @article{UBHD-68465853, author={Kather, Jakob Nikolas and Halama, Niels and J{\"a}ger, Dirk}, title={Genomics and emerging biomarkers for immunotherapy of colorectal cancer}, year={2018}, pages={189-197}, language={eng}, issn={1096-3650}, volume={52}, note={Gesehen am 10.12.2019}, journal={Seminars in cancer biology}, doi={10.1016/j.semcancer.2018.02.010}, } @article{UBHD-68408619, author={Kather, Jakob Nikolas and Halama, Niels}, title={Harnessing the innate immune system and local immunological microenvironment to treat colorectal cancer}, year={2019}, pages={871-882}, language={eng}, issn={1532-1827}, volume={120}, number={9}, note={Gesehen am 15.07.2019}, journal={British journal of cancer}, doi={10.1038/s41416-019-0441-6}, } @article{UBHD-68465857, author={Kather, Jakob Nikolas and Charoentong, Pornpimol and Suarez-Carmona, Meggy and Herpel, Esther and Klupp, Fee and Ulrich, Alexis and Schneider, Martin and Z{\"o}rnig, Inka and J{\"a}ger, Dirk and Halama, Niels}, title={High-throughput screening of combinatorial immunotherapies with patient-specific in silico models of metastatic colorectal cancer}, year={2018}, pages={5155-5163}, language={eng}, issn={1538-7445}, volume={78}, number={17}, note={Gesehen am 10.12.2019}, journal={Cancer research}, doi={10.1158/0008-5472.CAN-18-1126}, } @article{UBHD-69318565, author={Kather, Jakob Nikolas and Abernethy, Amy}, title={How AI will transform cancer care}, year={2024}, pages={1085-1087}, language={eng}, issn={1569-8041}, volume={35}, number={12 vom: Dez.}, note={Online verf{\"u}gbar: 15. September 2024 ; Gesehen am 14.03.2025}, journal={Annals of oncology}, doi={10.1016/j.annonc.2024.08.2335}, } @article{UBHD-68286000, author={Kather, Jakob Nikolas and Z{\"o}llner, Frank G. and Schad, Lothar R. and Melchers, Susanne and Sinn, Peter and Marx, Alexander and Gaiser, Timo and Weis, Cleo-Aron Thias}, title={Identification of a characteristic vascular belt zone in human colorectal cancer}, year={2017}, pages={19 S.}, language={eng}, issn={1932-6203}, volume={12(2017}, note={Gesehen am 16.07.2018}, journal={PLOS ONE}, doi={10.1371/journal.pone.0171378}, } @article{UBHD-68202958, author={Kather, Jakob Nikolas and Suarez-Carmona, Meggy and Krisam, Johannes and Charoentong, Pornpimol and Valous, Nektarios A. and Weis, Cleo-Aron Thias and Tavernar, Luca and Herpel, Esther and Klupp, Fee and Ulrich, Alexis and Schneider, Martin and Marx, Alexander and J{\"a}ger, Dirk and Halama, Niels}, title={In silico modeling of immunotherapy and stroma-targeting therapies in human colorectal cancer}, year={2017}, pages={6442-6452}, language={eng}, issn={1538-7445}, volume={77}, number={22}, note={Gesehen am 18.12.2017}, journal={Cancer research}, doi={10.1158/0008-5472.CAN-17-2006}, } @article{UBHD-69262903, author={Kather, Jakob Nikolas and Ferber, Dyke and Wiest, Isabella and Gilbert, Stephen and Truhn, Daniel}, title={Large language models could make natural language again the universal interface of healthcare}, year={2024}, pages={2708-2710}, language={eng}, issn={1546-170X}, volume={30}, number={10}, note={Online ver{\"o}ffentlicht: 23. August 2024 ; Gesehen am 16.10.2024}, journal={Nature medicine}, doi={10.1038/s41591-024-03199-w}, } @article{UBHD-68465848, author={Kather, Jakob Nikolas and Bergmeister-Berghoff, Anna Sophie and Suarez-Carmona, Meggy and J{\"a}ger, Dirk and Halama, Niels}, title={Large-scale database mining reveals hidden trends and future directions for cancer immunotherapy}, year={2018}, pages={8 S.}, language={eng}, issn={2162-402X}, volume={7(2018}, note={Gesehen am 10.12.2019}, journal={OncoImmunology}, doi={10.1080/2162402X.2018.1444412}, } @article{UBHD-69045692, author={Kather, Jakob Nikolas and Ghaffari Laleh, Narmin and Foersch, Sebastian and Truhn, Daniel}, title={Medical domain knowledge in domain-agnostic generative AI}, year={2022}, pages={1-5}, language={eng}, issn={2398-6352}, volume={5(2022) vom: Juli}, number={Artikel-ID 90}, note={Gesehen am 28.02.2023}, journal={npj digital medicine}, doi={10.1038/s41746-022-00634-5}, } @article{UBHD-68039115, author={Kather, Jakob Nikolas and Weis, Cleo-Aron Thias and Melchers, Susanne and Schad, Lothar R. and Gaiser, Timo and Marx, Alexander and Z{\"o}llner, Frank G.}, title={Multi-class texture analysis in colorectal cancer histology}, year={2016}, language={eng}, issn={2045-2322}, volume={6(2016) Artikel-Nummer 27988}, number={11 Seiten}, note={Gesehen am 14.10.2016}, journal={Scientific reports}, doi={10.1038/srep27988}, url={http://dx.doi.org/10.1038/srep27988}, library={UB}, } @article{UBHD-67967249, author={Kather, Jakob Nikolas and Weis, Cleo-Aron Thias and Marx, Alexander and Schad, Lothar R. and Z{\"o}llner, Frank G.}, title={New colors for histology: optimized bivariate color maps increase perceptual contrast in histological images}, year={2015}, pages={22 S.}, language={eng}, issn={1932-6203}, volume={10(2015}, note={Gesehen am 14.04.2016}, journal={PLOS ONE}, doi={10.1371/journal.pone.0145572}, url={http://dx.doi.org/10.1371/journal.pone.0145572}, library={UB}, } @article{UBHD-68119280, author={Kather, Jakob Nikolas and Schad, Lothar R. and Z{\"o}llner, Frank G.}, title={Polyphonic sonification of electrocardiography signals for diagnosis of cardiac pathologies}, year={2017}, language={eng}, issn={2045-2322}, volume={7(2017) Artikel-Nummer 44549}, number={6 Seiten}, note={Gesehen am 15.05.2017}, journal={Scientific reports}, doi={10.1038/srep44549}, url={http://dx.doi.org/10.1038/srep44549}, library={UB}, } @article{UBHD-68373685, author={Kather, Jakob Nikolas and Krisam, Johannes and Charoentong, Pornpimol and Herpel, Esther and Weis, Cleo-Aron Thias and Gaiser, Timo and Marx, Alexander and Valous, Nektarios A. and Ferber, Dyke and Z{\"o}rnig, Inka and J{\"a}ger, Dirk and Brenner, Hermann and Chang-Claude, Jenny and Hoffmeister, Michael and Halama, Niels}, title={Predicting survival from colorectal cancer histology slides using deep learning}, subtitle={a retrospective multicenter study}, year={2019}, pages={22 S.}, language={eng}, issn={1549-1676}, volume={16(2019}, note={Gesehen am 27.03.2019}, journal={PLoS medicine}, doi={10.1371/journal.pmed.1002730}, } @article{UBHD-67749381, author={Kather, Jakob Nikolas and Kroll, Jens}, title={Rho guanine exchange factors in blood vessels}, subtitle={fine-tuners of angiogenesis and vascular function}, year={2013}, pages={1289-1297}, language={eng}, issn={1090-2422}, volume={319}, note={Gesehen am: 17.12.2014 ; Available online 21 December 2012}, journal={Experimental cell research}, doi={10.1016/j.yexcr.2012.12.015}, } @article{UBHD-68328734, author={Kather, Jakob Nikolas and Suarez-Carmona, Meggy and Charoentong, Pornpimol and Weis, Cleo-Aron Thias and Hirsch, Daniela and Ferber, Dyke and Kel, Ivan and Herpel, Esther and Schott, Sarah and Z{\"o}rnig, Inka and Utikal, Jochen and Marx, Alexander and Gaiser, Timo and Brenner, Hermann and Chang-Claude, Jenny and Hoffmeister, Michael and J{\"a}ger, Dirk and Halama, Niels}, title={Topography of cancer-associated immune cells in human solid tumors}, year={2018}, pages={19 S.}, language={eng}, issn={2050-084X}, volume={7}, number={Artikel-ID e36967}, note={Gesehen am 15.11.2018}, journal={eLife}, doi={10.7554/eLife.36967}, } @article{UBHD-67811643, author={Kather, Jakob Nikolas and Kroll, Jens}, title={Transgenic mouse models of corneal neovascularization}, subtitle={new perspectives for angiogenesis research}, year={2014}, pages={7637-7651}, language={eng}, issn={1552-5783}, volume={55}, number={11}, note={Gesehen am: 30.04.2015}, journal={Investigative ophthalmology & visual science}, doi={10.1167/iovs.14-15430}, } @incollection{UBHD-68397493, author={Kather, Jakob Nikolas and J{\"a}ger, Dirk}, title={Die Zukunft der Krebstherapie}, year={2019}, pages={3-13}, language={ger}, isbn={978-3-95466-398-9 and 3-95466-398-8}, note={Literaturangaben}, booktitle={Die Zukunft der Medizin}, editor={B{\"o}ttinger, Erwin and Putlitz, Jasper Gans zu}, } @article{UBHD-68952604, author={Kers, Jesper and B{\"u}low, Roman David and Klinkhammer, Barbara Mara and Breimer, Gerben E. and Fontana, Francesco and Abiola, Adeyemi Adefidipe and Hofstraat, Rianne and Corthals, Garry L. and Peters-Sengers, Hessel and Djudjaj, Sonja and Stillfried, Saskia von and H{\"o}lscher, David L. and Pieters, Tobias T. and Zuilen, Arjan D. van and Bemelman, Frederike J. and Nurmohamed, Azam S. and Naesens, Maarten and Roelofs, Joris J. T. H. and Florquin, Sandrine and Fl{\"o}ge, J{\"u}rgen and Nguyen, Tri Q. and Kather, Jakob Nikolas and Boor, Peter}, title={Deep learning-based classification of kidney transplant pathology}, subtitle={a retrospective, multicentre, proof-of-concept study}, year={2022}, pages={e18-e26}, language={eng}, issn={2589-7500}, volume={4}, number={1}, note={Gesehen am 11.08.2022}, journal={The lancet}, doi={10.1016/S2589-7500(21)00211-9}, } @incollection{UBHD-69329001, author={Khader, Firas and Kather, Jakob Nikolas and Han, Tianyu and Nebelung, Sven and Kuhl, Christiane and Stegmaier, Johannes and Truhn, Daniel}, title={Cascaded cross-attention networks for data-efficient whole-slide image classification using transformers}, year={2024}, pages={417-426}, language={eng}, isbn={9783031456756}, journal={MLMI (14. : 2023 : Vancouver, British Columbia)Machine learning in medical imaging ; Part 2}, editor={Cao, Xiaohuan and Xu, Xuanang and Rekik, Islem and Cui, Zhiming and Ouyang, Xi}, } @article{UBHD-69106569, author={Khader, Firas and M{\"u}ller-Franzes, Gustav and Tayebi Arasteh, Soroosh and Han, Tianyu and Haarburger, Christoph and Schulze-Hagen, Maximilian and Schad, Philipp and Engelhardt, Sandy and Baeßler, Bettina and Foersch, Sebastian and Stegmaier, Johannes and Kuhl, Christiane and Nebelung, Sven and Kather, Jakob Nikolas and Truhn, Daniel}, title={Denoising diffusion probabilistic models for 3D medical image generation}, year={2023}, pages={1-12}, language={eng}, issn={2045-2322}, volume={13}, number={Artikel-ID 7303}, note={Ver{\"o}ffentlicht: 05. Mai 2023 ; Gesehen am 04.08.2023}, journal={Scientific reports}, doi={10.1038/s41598-023-34341-2}, } @article{UBHD-69117351, author={Khader, Firas and Kather, Jakob Nikolas and M{\"u}ller-Franzes, Gustav and Wang, Tianci and Han, Tianyu and Tayebi Arasteh, Soroosh and Hamesch, Karim and Bressem, Keno and Haarburger, Christoph and Stegmaier, Johannes and Kuhl, Christiane and Nebelung, Sven and Truhn, Daniel}, title={Medical transformer for multimodal survival prediction in intensive care}, subtitle={integration of imaging and non-imaging data}, year={2023}, pages={1-11}, language={eng}, issn={2045-2322}, volume={13}, number={Artikel-ID 10666}, note={Ver{\"o}ffentlicht: 01. Juli 2023 ; Gesehen am 30.08.2023}, journal={Scientific reports}, doi={10.1038/s41598-023-37835-1}, } @article{UBHD-68869770, author={Kiehl, Lennard and Kuntz, Sara and H{\"o}hn, Julia and Jutzi, Tanja and Krieghoff-Henning, Eva and Kather, Jakob Nikolas and Holland-Letz, Tim and Kopp-Schneider, Annette and Chang-Claude, Jenny and Brobeil, Alexander and Kalle, Christof von and Fr{\"o}hling, Stefan and Alwers, Elizabeth and Brenner, Hermann and Hoffmeister, Michael and Brinker, Titus Josef}, title={Deep learning can predict lymph node status directly from histology in colorectal cancer}, year={2021}, pages={464-473}, language={eng}, issn={1879-0852}, volume={157}, note={Gesehen am 22.01.2022}, journal={European journal of cancer}, doi={10.1016/j.ejca.2021.08.039}, } @article{UBHD-68793216, author={Kuntz, Sara and Krieghoff-Henning, Eva and Kather, Jakob Nikolas and Jutzi, Tanja and H{\"o}hn, Julia and Kiehl, Lennard and Hekler, Achim and Alwers, Elizabeth and Kalle, Christof von and Fr{\"o}hling, Stefan and Utikal, Jochen and Brenner, Hermann and Hoffmeister, Michael and Brinker, Titus Josef}, title={Gastrointestinal cancer classification and prognostication from histology using deep learning}, subtitle={Systematic review}, year={2021}, pages={200-215}, language={eng}, issn={1879-0852}, volume={155}, note={Gesehen am 25.10.2021}, journal={European journal of cancer}, doi={10.1016/j.ejca.2021.07.012}, } @article{UBHD-69151027, author={Kurz, Alexander and Krahl, Dieter and Kutzner, Heinz and Barnhill, Raymond and Perasole, Antonio and Figueras, Maria Teresa Fernandez and Ferrara, Gerardo and Braun, Stephan A. and Starz, Hans and Llamas-Velasco, Mar and Utikal, Jochen and Fr{\"o}hling, Stefan and Kalle, Christof von and Kather, Jakob Nikolas and Schneider, Lucas and Brinker, Titus Josef}, title={A 3-dimensional histology computer model of malignant melanoma and its implications for digital pathology}, year={2023}, pages={1-7}, language={eng}, issn={1879-0852}, volume={193(2023) vom: Nov.}, number={Artikel-ID 113294}, note={Online verf{\"u}gbar: 18. August 2023, Artikelversion: 9. September 2023 ; Gesehen am 08.12.2023}, journal={European journal of cancer}, doi={10.1016/j.ejca.2023.113294}, } @article{UBHD-69277315, author={Lehnen, Nils Christian and Dorn, Franziska and Wiest, Isabella and Zimmermann, Hanna and Radbruch, Alexander and Kather, Jakob Nikolas and Paech, Daniel}, title={Data extraction from free-text reports on mechanical thrombectomy in acute ischemic stroke using ChatGPT}, subtitle={a retrospective analysis}, year={2024}, pages={1-8}, language={eng}, issn={1527-1315}, volume={311}, note={Online ver{\"o}ffentlicht: 16. April 2024 ; Gesehen am 27.11.2024}, journal={Radiology}, doi={10.1148/radiol.232741}, } @article{UBHD-69313543, author={Lipkova, Jana and Kather, Jakob Nikolas}, title={The age of foundation models}, year={2024}, pages={769-770}, language={eng}, issn={1759-4782}, volume={21}, number={11}, note={Gesehen am 28.02.2025}, journal={Nature reviews}, doi={10.1038/s41571-024-00941-8}, } @article{UBHD-69053228, author={L{\"o}ffler, Chiara and Ortiz Bruechle, Nadina and Jung, Max and Seillier, Lancelot and Rose, Michael and Laleh, Narmin Ghaffari and Knuechel, Ruth and Brinker, Titus Josef and Trautwein, Christian and Gaisa, Nadine T. and Kather, Jakob Nikolas}, title={Artificial intelligence-based detection of FGFR3 mutational status directly from routine histology in bladder cancer}, subtitle={a possible preselection for molecular testing?}, year={2022}, pages={472-479}, language={eng}, issn={2405-4569}, volume={8}, number={2 vom: M{\"a}rz}, note={Gesehen am 20.03.2023}, journal={European urology focus}, doi={10.1016/j.euf.2021.04.007}, } @article{UBHD-68900148, author={L{\"o}ffler, Chiara and Gaisa, Nadine and Muti, Hannah Sophie and van Treeck, Marko and Echle, Amelie and Ghaffari Laleh, Narmin and Trautwein, Christian and Heij, Lara R. and Grabsch, Heike I. and Ortiz Bruechle, Nadina and Kather, Jakob Nikolas}, title={Predicting mutational status of driver and suppressor genes directly from histopathology with deep learning}, subtitle={a systematic study across 23 solid tumor types}, year={2022}, pages={1-13}, language={eng}, issn={1664-8021}, volume={12}, number={Artikel-ID 806386}, note={Gesehen am 28.03.2022}, journal={Frontiers in genetics}, } @article{UBHD-69331772, author={L{\"o}ffler, Chiara and El Nahhas, Omar S. M. and Muti, Hannah Sophie and Carrero, Zunamys I. and Seibel, Tobias Julian and van Treeck, Marko and Cifci, Didem and Gustav, Marco and Bretz, Kevin and Gaisa, Nadine and Lehmann, Kjong-Van and Leary, Alexandra and Selenica, Pier and Reis-Filho, Jorge S. and Ortiz-Bruechle, Nadina and Kather, Jakob Nikolas}, title={Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types}, year={2024}, pages={1-14}, language={eng}, issn={1741-7007}, volume={22}, number={1}, note={Gesehen am 16.04.2025}, journal={BMC biology}, doi={10.1186/s12915-024-02022-9}, } @article{UBHD-68793765, author={Maron, Roman C. and Schlager, Justin G. and Haggenm{\"u}ller, Sarah and Kalle, Christof von and Utikal, Jochen and Meier, Friedegund and Gellrich, Frank F. and Hobelsberger, Sarah and Hauschild, Axel and French, Lars and Heinzerling, Lucie and Schlaak, Max Simon and Ghoreschi, Kamran and Hilke, Franz and Poch, Gabriela and Heppt, Markus V. and Berking, Carola and Haferkamp, Sebastian and Sondermann, Wiebke and Schadendorf, Dirk and Schilling, Bastian and Goebeler, Matthias and Krieghoff-Henning, Eva and Hekler, Achim and Fr{\"o}hling, Stefan and Lipka, Daniel and Kather, Jakob Nikolas and Brinker, Titus Josef}, title={A benchmark for neural network robustness in skin cancer classification}, year={2021}, pages={191-199}, language={eng}, issn={1879-0852}, volume={155}, note={Gesehen am 26.10.2021}, journal={European journal of cancer}, doi={10.1016/j.ejca.2021.06.047}, } @article{UBHD-69076856, author={Maron, Roman C. and Hekler, Achim and Haggenm{\"u}ller, Sarah and Kalle, Christof von and Utikal, Jochen and M{\"u}ller, Verena and Gaiser, Maria and Meier, Friedegund and Hobelsberger, Sarah and Gellrich, Frank F. and Sergon, Mildred and Hauschild, Axel and French, Lars E. and Heinzerling, Lucie and Schlager, Justin Gabriel and Ghoreschi, Kamran and Schlaak, Max and Hilke, Franz and Poch, Gabriela and Korsing, S{\"o}ren and Berking, Carola and Heppt, Markus V. and Erdmann, Michael and Haferkamp, Sebastian and Schadendorf, Dirk and Sondermann, Wiebke and Goebeler, Matthias and Schilling, Bastian and Kather, Jakob Nikolas and Fr{\"o}hling, Stefan and Lipka, Daniel and Krieghoff-Henning, Eva and Brinker, Titus Josef}, title={Model soups improve performance of dermoscopic skin cancer classifiers}, year={2022}, pages={307-316}, language={eng}, issn={1879-0852}, volume={173}, note={Gesehen am 17.05.2023}, journal={European journal of cancer}, doi={10.1016/j.ejca.2022.07.002}, } @article{UBHD-68726158, author={Maron, Roman C. and Haggenm{\"u}ller, Sarah and Kalle, Christof von and Utikal, Jochen and Meier, Friedegund and Gellrich, Frank F. and Hauschild, Axel and French, Lars E. and Schlaak, Max and Ghoreschi, Kamran and Kutzner, Heinz and Heppt, Markus V. and Haferkamp, Sebastian and Sondermann, Wiebke and Schadendorf, Dirk and Schilling, Bastian and Hekler, Achim and Krieghoff-Henning, Eva and Kather, Jakob Nikolas and Fr{\"o}hling, Stefan and Lipka, Daniel and Brinker, Titus Josef}, title={Robustness of convolutional neural networks in recognition of pigmented skin lesions}, year={2021}, pages={81-91}, language={eng}, issn={1879-0852}, volume={145}, note={Gesehen am 21.04.2021}, journal={European journal of cancer}, doi={10.1016/j.ejca.2020.11.020}, } @article{UBHD-69291014, author={Misera, Leo and M{\"u}ller-Franzes, Gustav and Truhn, Daniel and Kather, Jakob Nikolas}, title={Weakly supervised deep learning in radiology}, year={2024}, pages={1-10}, language={eng}, issn={1527-1315}, volume={312}, note={Gesehen am 15.01.2025}, journal={Radiology}, doi={10.1148/radiol.232085}, } @article{UBHD-69300268, author={M{\"u}ller-Franzes, Gustav and Khader, Firas and Tayebi Arasteh, Soroosh and Huck, Luisa and Bode, Maike and Han, Tianyu and Lemainque, Teresa and Kather, Jakob Nikolas and Nebelung, Sven and Kuhl, Christiane and Truhn, Daniel}, title={Intraindividual comparison of different methods for automated BPE assessment at breast MRI}, subtitle={a call for standardization}, year={2024}, pages={1-9}, language={eng}, issn={1527-1315}, volume={312}, note={Gesehen am 04.02.2025 ; Online ver{\"o}ffentlicht: 16. Juli 2024}, journal={Radiology}, doi={10.1148/radiol.232304}, } @article{UBHD-69167852, author={Muti, Hannah Sophie and R{\"o}cken, Christoph and Behrens, Hans-Michael and L{\"o}ffler, Chiara M. L. and Reitsam, Nic G. and Grosser, Bianca and M{\"a}rkl, Bruno and Stange, Daniel E. and Jiang, Xiaofeng and Veldhuizen, Gregory P. and Truhn, Daniel and Ebert, Matthias and Grabsch, Heike I. and Kather, Jakob Nikolas}, title={Deep learning trained on lymph node status predicts outcome from gastric cancer histopathology}, subtitle={a retrospective multicentric study}, year={2023}, pages={1-12}, language={eng}, issn={1879-0852}, volume={194(2023) vom: Nov.}, number={Artikel-ID 113335}, note={Gesehen am 31.01.2024 ; Online verf{\"u}gbar 12 September 2023, Version des Artikels 18 October 2023}, journal={European journal of cancer}, doi={10.1016/j.ejca.2023.113335}, } @article{UBHD-68805588, author={Muti, Hannah Sophie and Heij, Lara Rosaline and Keller, Gisela and Kohlruss, Meike and Langer, Rupert and Dislich, Bastian and Cheong, Jae-Ho and Kim, Young-Woo and Kim, Hyunki and Kook, Myeong-Cherl and Cunningham, David and Allum, William H and Langley, Ruth E and Nankivell, Matthew G and Quirke, Philip and Hayden, Jeremy D and West, Nicholas P and Irvine, Andrew J and Yoshikawa, Takaki and Oshima, Takashi and Huss, Ralf and Grosser, Bianca and Roviello, Franco and d'Ignazio, Alessia and Quaas, Alexander and Alakus, Hakan and Tan, Xiuxiang and Pearson, Alexander T and Luedde, Tom and Ebert, Matthias and J{\"a}ger, Dirk and Trautwein, Christian and Gaisa, Nadine and Grabsch, Heike I and Kather, Jakob Nikolas}, title={Development and validation of deep learning classifiers to detect Epstein-Barr virus and microsatellite instability status in gastric cancer}, subtitle={a retrospective multicentre cohort study}, year={2021}, pages={e654-e664}, language={eng}, issn={2589-7500}, volume={3}, number={10}, note={Gesehen am 26.11.2021}, journal={The lancet}, doi={10.1016/S2589-7500(21)00133-3}, } @article{UBHD-68949963, author={Nam, David and Chapiro, Julius and Paradis, Valerie and Seraphin, Tobias Paul and Kather, Jakob Nikolas}, title={Artificial intelligence in liver diseases}, subtitle={improving diagnostics, prognostics and response prediction}, year={2022}, pages={1-11}, language={eng}, issn={2589-5559}, volume={4}, note={Gesehen am 03.08.2022}, journal={JHEP reports}, doi={10.1016/j.jhepr.2022.100443}, } @article{UBHD-69107840, author={Niehues, Jan Moritz and Quirke, Philip and West, Nicholas P. and Grabsch, Heike I. and van Treeck, Marko and Schirris, Yoni and Veldhuizen, Gregory P. and Hutchins, Gordon G. A. and Richman, Susan D. and Foersch, Sebastian and Brinker, Titus Josef and Fukuoka, Junya and Bychkov, Andrey and Uegami, Wataru and Truhn, Daniel and Brenner, Hermann and Brobeil, Alexander and Hoffmeister, Michael and Kather, Jakob Nikolas}, title={Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning}, subtitle={a retrospective multi-centric study}, year={2023}, pages={1-16}, language={eng}, issn={2666-3791}, volume={4}, note={Online verf{\"u}gbar 22 March 2023, Version des Artikels 18 April 2023 ; Gesehen am 09.08.2023}, journal={Cell reports}, doi={10.1016/j.xcrm.2023.100980}, } @article{UBHD-69088224, author={Perez-Lopez, Raquel and Reis-Filho, Jorge S. and Kather, Jakob Nikolas}, title={A framework for artificial intelligence in cancer research and precision oncology}, year={2023}, pages={1-3}, language={eng}, issn={2397-768X}, volume={7(2023) vom: Mai}, number={Artikel-ID 43}, note={Gesehen am 21.06.2023}, journal={npj precision oncology}, doi={10.1038/s41698-023-00383-y}, } @article{UBHD-68720189, author={Pietrobon, Violena and Cesano, Alessandra and Marincola, Francesco and Kather, Jakob Nikolas}, title={Next generation imaging techniques to define immune topographies in solid tumors}, year={2021}, pages={1-26}, language={eng}, issn={1664-3224}, volume={11}, number={Artikel-ID 604967}, note={Gesehen am 06.04.2021}, journal={Frontiers in immunology}, doi={10.3389/fimmu.2020.604967}, } @article{UBHD-69344318, author={Reitsam, Nic Gabriel and Enke, Johanna Sophie and Vu Trung, Kien and M{\"a}rkl, Bruno and Kather, Jakob Nikolas}, title={Artificial intelligence in colorectal cancer}, subtitle={from patient screening over tailoring treatment decisions to identification of novel biomarkers}, year={2024}, pages={331-344}, language={eng}, issn={1421-9867}, volume={105}, number={5}, note={Gesehen am 13.05.2025}, journal={Digestion}, doi={10.1159/000539678}, } @article{UBHD-69204721, author={Reitsam, Nic Gabriel and Grozdanov, Veselin D. and L{\"o}ffler, Chiara and Muti, Hannah Sophie and Grosser, Bianca and Kather, Jakob Nikolas and M{\"a}rkl, Bruno}, title={Novel biomarker SARIFA in colorectal cancer}, subtitle={highly prognostic, not genetically driven and histologic indicator of a distinct tumor biology}, year={2024}, pages={207-216}, language={eng}, issn={1476-5500}, volume={31}, number={2}, note={Gesehen am 16.04.2024}, journal={Cancer gene therapy}, doi={10.1038/s41417-023-00695-y}, } @article{UBHD-69139918, author={Saldanha, Oliver Lester and L{\"o}ffler, Chiara and Niehues, Jan Moritz and van Treeck, Marko and Seraphin, Tobias Paul and Hewitt, Katherine Jane and Cifci, Didem and Veldhuizen, Gregory Patrick and Ramesh, Siddhi and Pearson, Alexander T. and Kather, Jakob Nikolas}, title={Self-supervised attention-based deep learning for pan-cancer mutation prediction from histopathology}, year={2023}, pages={1-5}, language={eng}, issn={2397-768X}, volume={7}, number={Artikel-ID 35}, note={Gesehen am 6.11.2023}, journal={npj precision oncology}, doi={10.1038/s41698-023-00365-0}, } @article{UBHD-68754709, author={Schmitt, Max and Maron, Roman C. and Hekler, Achim and Stenzinger, Albrecht and Hauschild, Axel and Weichenthal, Michael and Tiemann, Markus and Krahl, Dieter and Kutzner, Heinz and Utikal, Jochen and Haferkamp, Sebastian and Kather, Jakob Nikolas and Klauschen, Frederick and Krieghoff-Henning, Eva and Fr{\"o}hling, Stefan and Kalle, Christof von and Brinker, Titus Josef}, title={Hidden variables in deep learning digital pathology and their potential to cause batch effects}, subtitle={prediction model study}, year={2021}, pages={1-8}, language={eng}, issn={1438-8871}, volume={23}, note={Gesehen am 01.07.2021}, journal={Journal of medical internet research}, doi={10.2196/23436}, } @article{UBHD-68934768, author={Schneider, Lucas and Laiouar-Pedari, Sara and Kuntz, Sara and Krieghoff-Henning, Eva and Hekler, Achim and Kather, Jakob Nikolas and Gaiser, Timo and Fr{\"o}hling, Stefan and Brinker, Titus Josef}, title={Integration of deep learning-based image analysis and genomic data in cancer pathology}, subtitle={a systematic review}, year={2022}, pages={80-91}, language={eng}, issn={1879-0852}, volume={160(2022) vom: Jan.}, note={Available online 19 November 2021 ; Gesehen am 27.06.2022}, journal={European journal of cancer}, doi={10.1016/j.ejca.2021.10.007}, } @article{UBHD-69007649, author={Schneider, Lucas and Krieghoff-Henning, Eva and Laiouar-Pedari, Sara and Kuntz, Sara and Hekler, Achim and Kather, Jakob Nikolas and Gaiser, Timo and Fr{\"o}hling, Stefan and Brinker, Titus Josef}, title={Response to letter entitled: Re: Integration of deep learning-based image analysis and genomic data in cancer pathology}, subtitle={a systematic review}, year={2022}, pages={403-404}, language={eng}, issn={1879-0852}, volume={172}, note={Online verf{\"u}gbar: 30 Juni 2022, Artikelversion 10 August 2022 ; Gesehen am 18.01.2023}, journal={European journal of cancer}, doi={10.1016/j.ejca.2022.06.001}, } @article{UBHD-68992669, author={Shmatko, Artem and Ghaffari Laleh, Narmin and Gerstung, Moritz and Kather, Jakob Nikolas}, title={Artificial intelligence in histopathology}, subtitle={enhancing cancer research and clinical oncology}, year={2022}, pages={1026-1038}, language={eng}, issn={2662-1347}, volume={3}, number={9}, note={Gesehen am 05.12.2022}, journal={Nature cancer}, doi={10.1038/s43018-022-00436-4}, } @article{UBHD-69106524, author={Tayebi Arasteh, Soroosh and Isfort, Peter and Saehn, Marwin and Mueller-Franzes, Gustav and Khader, Firas and Kather, Jakob Nikolas and Kuhl, Christiane and Nebelung, Sven and Truhn, Daniel}, title={Collaborative training of medical artificial intelligence models with non-uniform labels}, year={2023}, pages={1-9}, language={eng}, issn={2045-2322}, volume={13}, number={Artikel-ID 6046}, note={Gesehen am 04.08.2023}, journal={Scientific reports}, doi={10.1038/s41598-023-33303-y}, } @article{UBHD-69246378, author={Truhn, Daniel and Weber, Christian D. and Braun, Benedikt J. and Bressem, Keno and Kather, Jakob Nikolas and Kuhl, Christiane and Nebelung, Sven}, title={Author correction: A pilot study on the efficacy of GPT-4 in providing orthopedic treatment recommendations from MRI reports}, year={2024}, pages={1}, language={eng}, issn={2045-2322}, volume={14}, number={Artikel-ID 5431}, note={Gesehen am 22.08.2024}, journal={Scientific reports}, doi={10.1038/s41598-024-56029-x}, } @article{UBHD-69194137, author={Truhn, Daniel and Tayebi Arasteh, Soroosh and Saldanha, Oliver Lester and M{\"u}ller-Franzes, Gustav and Khader, Firas and Quirke, Philip and West, Nicholas P. and Gray, Richard and Hutchins, Gordon G. A. and James, Jacqueline A. and Loughrey, Maurice B. and Salto-Tellez, Manuel and Brenner, Hermann and Brobeil, Alexander and Yuan, Tanwei and Chang-Claude, Jenny and Hoffmeister, Michael and F{\"o}rsch, Sebastian and Han, Tianyu and Keil, Sebastian and Schulze-Hagen, Maximilian and Isfort, Peter and Bruners, Philipp and Kaissis, Georgios and Kuhl, Christiane and Nebelung, Sven and Kather, Jakob Nikolas}, title={Encrypted federated learning for secure decentralized collaboration in cancer image analysis}, year={2024}, pages={1-12}, language={eng}, issn={1361-8423}, volume={92(2024) vom: Feb.}, number={Artikel-ID 103059}, note={Online verf{\"u}gbar: 7. Dezember 2023, Artikelversion: 16. Dezember 2023 ; Gesehen am 21.03.2024}, journal={Medical image analysis}, doi={10.1016/j.media.2023.103059}, } @article{UBHD-69198253, author={Truhn, Daniel and L{\"o}ffler, Chiara and Mueller-Franzes, Gustav and Nebelung, Sven and Hewitt, Katherine J. and Brandner, Sebastian and Bressem, Keno and F{\"o}rsch, Sebastian and Kather, Jakob Nikolas}, title={Extracting structured information from unstructured histopathology reports using generative pre-trained transformer 4 (GPT-4)}, year={2024}, pages={310-319}, language={eng}, issn={1096-9896}, volume={262}, number={3 vom: M{\"a}rz}, note={Gesehen am 08.04.2024 ; Online ver{\"o}ffentlicht: 14. Dezember 2023}, journal={The journal of pathology}, doi={10.1002/path.6232}, } @article{UBHD-69246369, author={Truhn, Daniel and Eckardt, Jan-Niklas and Ferber, Dyke and Kather, Jakob Nikolas}, title={Large language models and multimodal foundation models for precision oncology}, year={2024}, pages={1-4}, language={eng}, issn={2397-768X}, volume={8}, number={Artikel-ID 72}, note={Gesehen am 22.08.2024}, journal={npj precision oncology}, doi={10.1038/s41698-024-00573-2}, } @article{UBHD-69212488, author={Truhn, Daniel and Weber, Christian D. and Braun, Benedikt J. and Bressem, Keno and Kather, Jakob Nikolas and Kuhl, Christiane and Nebelung, Sven}, title={A pilot study on the efficacy of GPT-4 in providing orthopedic treatment recommendations from MRI reports}, year={2023}, pages={1-9}, language={eng}, issn={2045-2322}, volume={13}, number={Artikel-ID 20159}, note={Gesehen am 10.05.2024}, journal={Scientific reports}, doi={10.1038/s41598-023-47500-2}, } @article{UBHD-69340146, author={Truhn, Daniel and Kather, Jakob Nikolas}, title={Synthetic chest X-ray images from text prompts}, year={2025}, pages={439-440}, language={eng}, issn={2157-846X}, volume={9}, number={4}, note={Gesehen am 29.04.2025}, journal={Nature biomedical engineering}, doi={10.1038/s41551-024-01261-z}, } @article{UBHD-69224585, author={Unger, Michaela and Kather, Jakob Nikolas}, title={Deep learning in cancer genomics and histopathology}, year={2024}, pages={1-14}, language={eng}, issn={1756-994X}, volume={16}, number={Artikel-ID 44}, note={Gesehen am 19.06.2024}, journal={Genome medicine}, doi={10.1186/s13073-024-01315-6}, } @article{UBHD-69224907, author={Unger, Michaela and Kather, Jakob Nikolas}, title={A systematic analysis of deep learning in genomics and histopathology for precision oncology}, year={2024}, pages={1-10}, language={eng}, issn={1755-8794}, volume={17}, number={Artikel-ID 48}, note={Gesehen am 20.06.2024}, journal={BMC medical genomics}, doi={10.1186/s12920-024-01796-9}, } @article{UBHD-69185585, author={Veldhuizen, Gregory Patrick and R{\"o}cken, Christoph and Behrens, Hans-Michael and Cifci, Didem and Muti, Hannah Sophie and Yoshikawa, Takaki and Arai, Tomio and Oshima, Takashi and Tan, Patrick and Ebert, Matthias and Pearson, Alexander T. and Calderaro, Julien and Grabsch, Heike I. and Kather, Jakob Nikolas}, title={Deep learning-based subtyping of gastric cancer histology predicts clinical outcome}, subtitle={a multi-institutional retrospective study: original article}, year={2023}, pages={708-720}, language={eng}, issn={1436-3305}, volume={26}, number={5 vom: Sept.}, note={Online ver{\"o}ffentlicht: 3. Juni 2023 ; Gesehen am 26.02.2024}, journal={Gastric cancer}, doi={10.1007/s10120-023-01398-x}, } @article{UBHD-69219011, author={Vucur, Mihael and Ghallab, Ahmed and Schneider, Anne Theres and Adili, Arlind and Cheng, Mingbo and Castoldi, Mirco and Singer, Michael T. and B{\"u}ttner, Veronika and Keysberg, Leonie S. and K{\"u}sgens, Lena and Kohlhepp, Marlene and G{\"o}rg, Boris and Gallage, Suchira and Barragan Avila, José Efren and Unger, Kristian and Kordes, Claus and Leblond, Anne-Laure and Albrecht, Wiebke and Loosen, Sven and Angendohr, Carolin and J{\"o}rdens, Markus Sebastian and Babler, Anne and Hayat, Sikander and Schumacher, David and Koenen, Maria Teresa and Govaere, Olivier and Boekschoten, Mark V. and J{\"o}rs, Simone and Villacorta-Martin, Carlos and Mazzaferro, Vincenzo and Llovet, Josep M. and Weiskirchen, Ralf and Kather, Jakob Nikolas and Starlinger, Patrick and Trauner, Michael and L{\"u}dde, Mark and Heij, Lara R. and Neumann, Ulf Peter and Keitel-Anselmino, Verena and Bode, Johannes G. and Schneider-Kramann, Rebekka Katharina Marita and Tacke, Frank and Levkau, Bodo and Lammers, Twan and Fl{\"u}gen, Georg Erhard Wilhelm and Alexandrov, Theodore and Collins, Amy L. and Nelson, Glyn and Oakley, Fiona and Mann, Derek A. and Roderburg, Christoph and Longerich, Thomas and Weber, Achim and Villanueva, Augusto and Samson, Andre L. and Murphy, James M. and Kramann, Rafael and Geisler, Fabian and Costa, Ivan G. and Hengstler, Jan G. and Heikenw{\"a}lder, Mathias and L{\"u}dde, Tom}, title={Sublethal necroptosis signaling promotes inflammation and liver cancer}, year={2023}, pages={1578-1595.e8}, language={eng}, issn={1097-4180}, volume={56}, number={7}, journal={Immunity}, doi={10.1016/j.immuni.2023.05.017}, } @article{UBHD-69317578, author={Vu Trung, Kien and Hollenbach, Marcus and Veldhuizen, Gregory Patrick and Saldanha, Oliver Lester and Garbe, Jakob and Rosendahl, Jonas and Krug, Sebastian and Michl, Patrick and Feisthammel, J{\"u}rgen and Karlas, Thomas Franz Clemens and Hampe, Jochen and Hoffmeister, Albrecht and Kather, Jakob Nikolas}, title={Deep learning-based detection of malignant bile duct stenosis in fluoroscopy images of endoscopic retrograde cholangiopancreatography}, year={2024}, pages={1-16}, language={eng}, issn={1421-9867}, journal={Digestion}, doi={10.1159/000543049}, } @article{UBHD-68681278, author={Walle, Thomas and Erdal, Erkin and M{\"u}hlsteffen, Leon and Singh, Hans Martin and Gnutzmann, Editha and Gr{\"u}n, Barbara and Hofmann, Helene and Ivanova, Alexandra and K{\"o}hler, Bruno Christian and Korell, Felix and Mavratzas, Athanasios and Mock, Andreas and Pixberg, Constantin Frederic and Schult, David and Starke, Helen and Steinebrunner, Niels and Woydack, Lena and Schneeweiss, Andreas and Dietrich, Mareike and J{\"a}ger, Dirk and Krisam, Johannes and Kather, Jakob Nikolas and Winkler, Eva C.}, title={Completion rate and impact on physician-patient relationship of video consultations in medical oncology}, subtitle={a randomised controlled open-label trial}, year={2020}, pages={9 S.}, language={eng}, issn={2059-7029}, volume={5(2020}, note={Available online 17 November 2020, version of record 4 January 2021 ; Gesehen am 19.01.2021}, journal={ESMO open}, doi={10.1136/esmoopen-2020-000912}, } @article{UBHD-68351513, author={Weis, Cleo-Aron Thias and Kather, Jakob Nikolas and Melchers, Susanne and Al-ahmdi, Hanaa and Gaiser, Timo}, title={Automatic evaluation of tumor budding in immunohistochemically stained colorectal carcinomas and correlation to clinical outcome}, year={2018}, pages={1-12}, language={eng}, issn={1746-1596}, volume={13}, number={Artikel-ID 64}, note={Gesehen am 24.01.2019}, journal={Diagnostic pathology}, doi={10.1186/s13000-018-0739-3}, } @book{UBHD-68331100, author={Weis, Cleo-Aron Thias and Kather, Jakob Nikolas and Melchers, Susanne and Al-ahmdi, Hanaa and Gaiser, Timo}, title={Automatic evaluation of tumor budding in immunohistochemically stained colorectal carcinomas and correlation to clinical outcome}, publisher={BioMed Central}, address={[S.l.]}, year={2018}, pages={1 Online-Ressource (12 Seiten)}, language={eng}, note={Aus: Diagnostic Pathology, 13 (2018), Nr. 64. pp. 1-12. ISSN 1746-1596}, doi={10.1186/s13000-018-0739-3}, url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-254551}, library={UB}, } @article{UBHD-68979807, author={Wessels, Frederik and Schmitt, Max and Krieghoff-Henning, Eva and Kather, Jakob Nikolas and Nientiedt, Malin and Kriegmair, Maximilian and Worst, Thomas and Neuberger, Manuel and Steeg, Matthias and Popovic, Zoran V. and Gaiser, Timo and Kalle, Christof von and Utikal, Jochen and Fr{\"o}hling, Stefan and Michel, Maurice Stephan and Nuhn, Philipp and Brinker, Titus Josef}, title={Deep learning can predict survival directly from histology in clear cell renal cell carcinoma}, year={2022}, pages={1-14}, language={eng}, issn={1932-6203}, volume={17}, note={Gesehen am 28.10.2022}, journal={PLOS ONE}, doi={10.1371/journal.pone.0272656}, } @article{UBHD-69340108, author={Wiest, Isabella and Verhees, Falk Gerrik and Ferber, Dyke and Zhu, Jiefu and Bauer, Michael and Lewitzka, Ute and Pfennig, Andrea and Mikolas, Pavol and Kather, Jakob Nikolas}, title={Detection of suicidality from medical text using privacy-preserving large language models}, subtitle={feature}, year={2024}, pages={532-537}, language={eng}, issn={1472-1465}, volume={225}, number={6}, note={Gesehen am 29.04.2025}, journal={The British journal of psychiatry}, doi={10.1192/bjp.2024.134}, } @article{UBHD-69263867, author={Wiest, Isabella and Ferber, Dyke and Zhu, Jiefu and van Treeck, Marko and Meyer, Sonja K. and Juglan, Radhika and Carrero, Zunamys I. and Paech, Daniel and Kleesiek, Jens Philipp and Ebert, Matthias and Truhn, Daniel and Kather, Jakob Nikolas}, title={Privacy-preserving large language models for structured medical information retrieval}, year={2024}, pages={1-9}, language={eng}, issn={2398-6352}, volume={7}, number={1}, note={Gesehen am 21.10.2024}, journal={npj digital medicine}, doi={10.1038/s41746-024-01233-2}, } @article{UBHD-69327756, author={Woźnicki, Piotr and Laqua, Caroline and Fiku, Ina and Hekalo, Amar and Truhn, Daniel and Engelhardt, Sandy and Kather, Jakob Nikolas and F{\"o}rsch, Sebastian and D’Antonoli, Tugba Akinci and Pinto dos Santos, Daniel and Baeßler, Bettina and Laqua, Fabian Christopher}, title={Automatic structuring of radiology reports with on-premise open-source large language models}, year={2025}, pages={2018-2029}, language={eng}, issn={1432-1084 and 1613-3757}, volume={35}, number={4}, note={Online ver{\"o}ffentlicht: 10. Oktober 2024 ; Gesehen am 03.04.2025}, journal={European radiology}, doi={10.1007/s00330-024-11074-y}, } @article{UBHD-69198299, author={Yuan, Tanwei and Edelmann, Dominic and Kather, Jakob Nikolas and Fan, Ziwen and Tagscherer, Katrin and Roth, Wilfried and Bewerunge-Hudler, Melanie and Brobeil, Alexander and Kloor, Matthias and Bl{\"a}ker, Hendrik and Burwinkel, Barbara and Brenner, Hermann and Hoffmeister, Michael}, title={CpG-biomarkers in tumor tissue and prediction models for the survival of colorectal cancer}, subtitle={A systematic review and external validation study}, year={2024}, pages={1-10}, language={eng}, issn={1879-0461}, volume={193}, number={Artikel-ID 104199}, note={Online verf{\"u}gbar: 11. November 2023 ; Gesehen am 08.04.2024}, journal={Critical reviews in oncology, hematology}, doi={10.1016/j.critrevonc.2023.104199}, } @article{UBHD-69115128, author={Yuan, Tanwei and Edelmann, Dominic and Fan, Ziwen and Alwers, Elizabeth and Kather, Jakob Nikolas and Brenner, Hermann and Hoffmeister, Michael}, title={Machine learning in the identification of prognostic DNA methylation biomarkers among patients with cancer}, subtitle={a systematic review of epigenome-wide studies}, year={2023}, pages={1-12}, language={eng}, issn={1873-2860}, volume={143(2023) vom: Sept.}, number={Artikel-ID 102589}, note={Online ver{\"o}ffentlicht: 1. Juni 2023 ; Gesehen am 22.08.2023}, journal={Artificial intelligence in medicine}, doi={10.1016/j.artmed.2023.102589}, } @article{UBHD-68967086, author={Zeng, Qinghe and Klein, Christophe and Caruso, Stefano and Maille, Pascale and Laleh, Narmin Ghaffari and Sommacale, Daniele and Laurent, Alexis and Amaddeo, Giuliana and Gentien, David and Rapinat, Audrey and Regnault, Hélène and Charpy, Cécile and Nguyen, Cong Trung and Tournigand, Christophe and Brustia, Raffaele and Pawlotsky, Jean Michel and Kather, Jakob Nikolas and Maiuri, Maria Chiara and Loménie, Nicolas and Calderaro, Julien}, title={Artificial intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology}, year={2022}, pages={116-127}, language={eng}, issn={1600-0641}, volume={77}, number={1}, note={Gesehen am 25.09.2022}, journal={Journal of hepatology}, doi={10.1016/j.jhep.2022.01.018}, } @article{UBHD-69348429, author={Žigutytė, Laura and Sorz-Nechay, Thomas and Clusmann, Jan Niklas and Kather, Jakob Nikolas}, title={Use of artificial intelligence for liver diseases}, subtitle={a survey from the EASL congress 2024}, year={2024}, pages={1-15}, language={eng}, issn={2589-5559}, volume={6}, note={Online verf{\"u}gbar: 06. September 2024, Artikelversion: 08. November 2024 ; Gesehen am 27.05.2025}, journal={JHEP reports}, doi={10.1016/j.jhepr.2024.101209}, }