@article{UBHD-69100904,
  author={Anderson, Annette C. and von Ohle, C. and Frese, Cornelia and Boutin, Sébastien and Bridson, Calum and Schoilew, Kyrill and Peikert, S. A. and Hellwig, Elmar and Pelz, K. and Wittmer, A. and Wolff, Diana and Al-Ahmad, Ali},
  title={The oral microbiota is a reservoir for antimicrobial resistance},
  subtitle={resistome and phenotypic resistance characteristics of oral biofilm in health, caries, and periodontitis},
  year={2023},
  pages={1-19},
  language={eng},
  issn={1476-0711},
  volume={22},
  number={Artikel-ID 37},
  note={Ver{\"o}ffentlicht: 13. Mai 2023 ; Gesehen am 25.07.2023},
  journal={Annals of clinical microbiology and antimicrobials},
  doi={10.1186/s12941-023-00585-z},
}
@article{UBHD-68874233,
  author={Arweiler, Nicole and Rahmel, Vivien and Alashkar Alhamwe, Bilal and Alhamdan, Fahd and Zemlin, Michael and Boutin, Sébastien and Dalpke, Alexander and Renz, Harald},
  title={Dental biofilm and saliva microbiome and its interplay with pediatric allergies},
  year={2021},
  pages={1-11},
  language={eng},
  issn={2076-2607},
  volume={9},
  journal={Microorganisms},
  doi={10.3390/microorganisms9061330},
}
@article{UBHD-69032511,
  author={Bartha, Valentin and Steinmacher, Sahra and Wittlinger, Rebekka and Boutin, Sébastien and Pauluschke-Fr{\"o}hlich, Jan and Ohle, Christiane von and Brucker, Sara and Bruckner, Thomas and Wolff, Diana},
  title={Gain a baby lose a tooth},
  subtitle={is there an association between periodontitis and preterm birth?},
  year={2022},
  pages={1-16},
  language={eng},
  issn={2077-0383},
  volume={11},
  note={Gesehen am 01.02.2023},
  journal={Journal of Clinical Medicine},
  doi={10.3390/jcm11237183},
}
@article{UBHD-69221245,
  author={Bechberger, Maren and Eigenbrod, Tatjana and Boutin, Sébastien and Heeg, Klaus and Bode, K. A.},
  title={IL-1β knockout increases the intestinal abundancy of Akkermansia muciniphila},
  year={2023},
  pages={361-370},
  language={eng},
  issn={1876-2891},
  volume={14},
  number={4 vom: Dez.},
  note={Online ver{\"o}ffentlicht: 1. September 2023 ; Gesehen am 06.06.2024},
  journal={Beneficial microbes},
  doi={10.1163/18762891-20220042},
}
@article{UBHD-68251855,
  author={Boutin, Sébastien and Dalpke, Alexander},
  title={Acquisition and adaptation of the airway microbiota in the early life of cystic fibrosis patients},
  year={2017},
  language={eng},
  issn={2194-7791},
  volume={4(2017) Artikel-Nummer 1},
  number={9 Seiten},
  note={Gesehen am 14.05.2018},
  journal={Molecular and Cellular Pediatrics},
  doi={10.1186/s40348-016-0067-1},
}
@article{UBHD-68188222,
  author={Boutin, Sébastien and Gr{\"a}ber, Simon Y. and Stahl, Mirjam and Dittrich, A. Susanne and Mall, Marcus A. and Dalpke, Alexander},
  title={Chronic but not intermittent infection with Pseudomonas aeruginosa is associated with global changes of the lung microbiome in cystic fibrosis},
  year={2017},
  pages={4 S.},
  language={eng},
  issn={1399-3003},
  volume={50},
  note={Gesehen am 09.11.2017},
  journal={The European respiratory journal},
  doi={10.1183/13993003.01086-2017},
}
@article{UBHD-68252205,
  author={Boutin, Sébastien and Hagenfeld, Daniel and Zimmermann, Heiko and Sayed, Nihad el and Becher, Heiko and Kim, Ti-Sun and Dalpke, Alexander},
  title={Clustering of subgingival microbiota reveals microbial disease ecotypes associated with clinical stages of periodontitis in a cross-sectional study},
  year={2017},
  pages={13 S.},
  language={eng},
  issn={1664-302X},
  volume={8(2017) Artikel-Nummer 340},
  number={13 Seiten},
  note={Gesehen am 15.05.2018},
  journal={Frontiers in microbiology},
  doi={10.3389/fmicb.2017.00340},
}
@article{UBHD-68104255,
  author={Boutin, Sébastien and Gr{\"a}ber, Simon Y. and Weitnauer, Michael and Panitz, Jessica and Stahl, Mirjam and Mall, Marcus A. and Dalpke, Alexander},
  title={Comparison of microbiomes from different niches of upper and lower airways in children and adolescents with cystic fibrosis},
  year={2015},
  language={eng},
  issn={1932-6203},
  volume={10(2015},
  note={Gesehen am 29.03.2017},
  journal={PLOS ONE},
  doi={10.1371/journal.pone.0116029},
}
@article{UBHD-68251859,
  author={Boutin, Sébastien and Stahl, Mirjam and Gr{\"a}ber, Simon Y. and Dittrich, A. Susanne and Mall, Marcus A. and Dalpke, Alexander},
  title={Comparison of oropharyngeal microbiota from children with asthma and cystic fibrosis},
  year={2017},
  pages={10 S.},
  language={eng},
  issn={1466-1861},
  volume={(2017) Artikel-Nummer ID 5047403},
  number={10 Seiten},
  note={Gesehen am 14.05.2018},
  journal={Mediators of inflammation},
}
@article{UBHD-69313280,
  author={Boutin, Sébastien and Scherrer, Martin and Sp{\"a}th, Isabel and Kocer, Kaan and Heeg, Klaus and Nurjadi, Dennis},
  title={Cross-contamination of carbapenem-resistant Gram-negative bacteria between patients and the hospital environment in the first year of a newly built surgical ward},
  year={2024},
  pages={118-127},
  language={eng},
  issn={1532-2939},
  volume={144(2024) vom: Feb.},
  note={Online ver{\"o}ffentlicht: 9. Dezember 2023 ; Gesehen am 27.02.2025},
  journal={The journal of hospital infection},
  doi={10.1016/j.jhin.2023.11.016},
}
@article{UBHD-69100113,
  author={Boutin, Sébastien and Hildebrand, Dagmar and Boulant, Steeve and Kreuter, Michael and R{\"u}ter, Jule and Pallerla, Srinivas Reddy and Velavan, Thirumalaisamy P. and Nurjadi, Dennis},
  title={Host factors facilitating SARS‐CoV‐2 virus infection and replication in the lungs},
  year={2021},
  pages={5953-5976},
  language={eng},
  issn={1420-9071},
  volume={78},
  number={16},
  note={Gesehen am 21.07.2023},
  journal={Cellular and molecular life sciences},
  doi={10.1007/s00018-021-03889-5},
  url={https://doi.org/10.1007/s00018-021-03889-5},
  library={UB},
}
@article{UBHD-69313224,
  author={Boutin, Sébastien and Welker, S. and Gerigk, Marlis and Miethke, Thomas and Heeg, Klaus and Nurjadi, Dennis},
  title={Molecular surveillance of carbapenem-resistant Enterobacterales in two nearby tertiary hospitals to identify regional spread of high-risk clones in Germany, 2019-2020},
  year={2024},
  pages={126-134},
  language={eng},
  issn={1532-2939},
  volume={149},
  note={Online verf{\"u}gbar: 7. Mai 2024, Artikelversion: 7. Juni 2024 ; Gesehen am 27.02.2025},
  journal={The journal of hospital infection},
  doi={10.1016/j.jhin.2024.04.014},
}
@article{UBHD-68408560,
  author={Boutin, Sébastien and Weitnauer, Michael and Gr{\"a}ber, Simon Y. and Stahl, Mirjam and Dittrich, A. Susanne and Mall, Marcus A. and Dalpke, Alexander},
  title={One time quantitative PCR detection of Pseudomonas aeruginosa to discriminate intermittent from chronic infection in cystic fibrosis},
  year={2018},
  pages={348-355},
  language={eng},
  issn={1873-5010},
  volume={17},
  number={3},
  note={Gesehen am 15.07.2019},
  journal={Journal of cystic fibrosis},
  doi={10.1016/j.jcf.2017.12.007},
}
@article{UBHD-68402664,
  author={Braun, Markus S. and Wang, Erjia and Zimmermann, Stefan and Boutin, Sébastien and Wink, Michael},
  title={Kocuria tytonicola, new bacteria from the preen glands of American barn owls (Tyto furcata)},
  year={2019},
  pages={198-204},
  language={eng},
  issn={1618-0984},
  volume={42},
  number={2},
  note={Available online 20 November 2018 ; Gesehen am 28.06.2019},
  journal={Systematic and applied microbiology},
  doi={10.1016/j.syapm.2018.11.004},
}
@article{UBHD-68220106,
  author={Braun, Markus S. and Wang, Erjia and Zimmermann, Stefan and Boutin, Sébastien and Wink, Michael},
  title={Kocuria uropygioeca sp. nov. and Kocuria uropygialis sp. nov., isolated from the preen glands of Great Spotted Woodpeckers (Dendrocopos major)},
  year={2018},
  pages={38-43},
  language={eng},
  issn={1618-0984},
  volume={41},
  number={1},
  note={Gesehen am 14.02.2018},
  journal={Systematic and applied microbiology},
  doi={10.1016/j.syapm.2017.09.005},
}
@article{UBHD-68881494,
  author={Chung, Jaehi and W{\"u}nnemann, Felix and Salomon, Johanna J. and Boutin, Sébastien and Frey, Dario and Albrecht, Tobias and Joachim, Cornelia and Eichinger, Monika and Mall, Marcus A. and Wielp{\"u}tz, Mark Oliver and Sommerburg, Olaf},
  title={Inflammatory markers detected in nasal lavage correlate with paranasal sinus abnormalities at MRI in adolescent patients with cystic fibrosis},
  year={2021},
  pages={1-13},
  language={eng},
  issn={2076-3921},
  volume={10},
  note={Gesehen am 22.02.2022},
  journal={Antioxidants},
  doi={10.3390/antiox10091412},
}
@article{UBHD-68569978,
  author={Eichel, Vanessa and Papan, C. and Boutin, Sébastien and P{\"o}schl, Johannes and Heeg, Klaus and Nurjadi, Dennis},
  title={Alteration of antibiotic regimen as an additional control measure in suspected multi-drug-resistant Enterobacter cloacae outbreak in a neonatal intensive care unit},
  year={2020},
  pages={144-149},
  language={eng},
  issn={1532-2939},
  volume={104},
  number={2},
  note={Available online 13 September 2019 ; Gesehen am 24.04.2020},
  journal={The journal of hospital infection},
  doi={10.1016/j.jhin.2019.09.007},
}
@article{UBHD-68635888,
  author={Eichel, Vanessa and Klein, Sabrina and Bootsveld, Carolin and Frank, Uwe and Heeg, Klaus and Boutin, Sébastien and Nurjadi, Dennis},
  title={Challenges in interpretation of WGS and epidemiological data to investigate nosocomial transmission of vancomycin-resistant Enterococcus faecium in an endemic region},
  subtitle={incorporation of patient movement network and admission screening},
  year={2020},
  pages={1716-1721},
  language={eng},
  issn={1460-2091},
  volume={75},
  number={7},
  note={Gesehen am 09.09.2020},
  journal={The journal of antimicrobial chemotherapy},
  doi={10.1093/jac/dkaa122},
}
@article{UBHD-68932268,
  author={Eichel, Vanessa and Boutin, Sébastien and Frank, Uwe and Weigand, Markus A. and Heininger, Alexandra and Mutters, Nico T. and B{\"u}chler, Markus W. and Heeg, Klaus and Nurjadi, Dennis},
  title={Impact of discontinuing contact precautions and enforcement of basic hygiene measures on nosocomial vancomycin-resistant Enterococcus faecium transmission},
  year={2022},
  pages={120-127},
  language={eng},
  issn={1532-2939},
  volume={121},
  note={Available online 30 November 2021 ; Gesehen am 20.06.2022},
  journal={The journal of hospital infection},
  doi={10.1016/j.jhin.2021.11.020},
}
@article{UBHD-68969366,
  author={Frese, Cornelia and Reissfelder, Lisa-Sophie and Kilian, Samuel and Felten, Anna and Laurisch, Lutz and Schoilew, Kyrill and Boutin, Sébastien},
  title={Can the acid-formation potential of saliva detect a caries-related shift in the oral microbiome?},
  year={2022},
  pages={51-60},
  language={eng},
  issn={1757-9996},
  volume={20},
  number={1},
  note={Gesehen am 29.09.2022},
  journal={Oral health & preventive dentistry},
  doi={10.3290/j.ohpd.b2573053},
}
@article{UBHD-68441652,
  author={Freund, Isabel and Boutin, Sébastien and K{\"o}tter, Annika Elisabeth and Marchand, Virginie and Dalpke, Alexander and Eigenbrod, Tatjana},
  title={2′-O-methylation within prokaryotic and eukaryotic tRNA inhibits innate immune activation by endosomal Toll-like receptors but does not affect recognition of whole organisms},
  year={2019},
  pages={869-880},
  language={eng},
  issn={1469-9001},
  volume={25},
  number={7},
  note={Gesehen am 17.10.2019},
  journal={RNA},
  doi={10.1261/rna.070243.118},
}
@article{UBHD-68943453,
  author={Frey, Dario and Bridson, Calum and Dittrich, A. Susanne and Gr{\"a}ber, Simon Y. and Stahl, Mirjam and Wege, Sabine and Herth, Felix and Sommerburg, Olaf and Schultz, Carsten and Dalpke, Alexander and Mall, Marcus A. and Boutin, Sébastien},
  title={Changes in microbiome dominance are associated with declining lung function and fluctuating inflammation in people with cystic fibrosis},
  year={2022},
  pages={1-12},
  language={eng},
  issn={1664-302X},
  volume={13},
  number={Artikel-ID 885822},
  note={Gesehen am 18.07.2022},
  journal={Frontiers in microbiology},
  doi={10.3389/fmicb.2022.885822},
}
@article{UBHD-68917884,
  author={Frey, Dario and Boutin, Sébastien and Dittrich, A. Susanne and Gr{\"a}ber, Simon Y. and Stahl, Mirjam and Wege, Sabine and Herth, Felix and Sommerburg, Olaf and Schultz, Carsten and Mall, Marcus A. and Dalpke, Alexander},
  title={Relationship between airway dysbiosis, inflammation and lung function in adults with cystic fibrosis},
  year={2021},
  pages={754-760},
  language={eng},
  issn={1873-5010},
  volume={20},
  number={5},
  note={Gesehen am 12.05.2022},
  journal={Journal of cystic fibrosis},
  doi={10.1016/j.jcf.2020.12.022},
}
@article{UBHD-68767622,
  author={Gr{\"a}ber, Simon Y. and Boutin, Sébastien and Wielp{\"u}tz, Mark Oliver and Joachim, Cornelia and Frey, Dario and Wege, Sabine and Sommerburg, Olaf and Kauczor, Hans-Ulrich and Stahl, Mirjam and Dalpke, Alexander and Mall, Marcus A.},
  title={Effects of lumacaftor-ivacaftor on lung clearance index, magnetic resonance imaging, and airway microbiome in Phe508del homozygous patients with cystic fibrosis},
  year={2021},
  pages={971-980},
  language={eng},
  issn={2325-6621},
  volume={18},
  number={6},
  note={Gesehen am 06.08.2021},
  journal={Annals of the American Thoracic Society},
  doi={10.1513/AnnalsATS.202008-1054OC},
}
@article{UBHD-68647875,
  author={Heininger, Alexandra and Zimmermann, Stefan and Bootsveld, Carolin and Boutin, Sébastien and Nurjadi, Dennis},
  title={Low prevalence of combined linezolid- and vancomycin-resistant Enterococcus faecium from hospital admission screening in an endemic region in Germany},
  year={2020},
  pages={646-650},
  language={eng},
  issn={2213-7173},
  volume={22},
  note={Gesehen am 13.10.2020},
  journal={Journal of global antimicrobial resistance},
  doi={10.1016/j.jgar.2020.05.003},
}
@article{UBHD-68449479,
  author={Héry-Arnaud, Geneviève and Boutin, Sébastien},
  title={The lung and gut microbiome},
  subtitle={what has to be taken into consideration for cystic fibrosis?},
  year={2019},
  pages={13-21},
  language={eng},
  issn={1873-5010},
  volume={18},
  number={1},
  note={Available online 25 November 2018 ; Gesehen am 19.11.2019},
  journal={Journal of cystic fibrosis},
  doi={10.1016/j.jcf.2018.11.003},
}
@article{UBHD-68743956,
  author={Klein, Sabrina and Boutin, Sébastien and Sp{\"a}th, Isabel and Kimmich, Christoph and Brandt, Juliane and M{\"u}ller-Tidow, Carsten and Heeg, Klaus and Nurjadi, Dennis},
  title={Acquisition and transmission of carbapenemase-producing (blaKPC-2) enterobacter cloacae in a highly frequented outpatient clinic},
  year={2021},
  pages={e158-e161},
  language={eng},
  issn={1537-6591},
  volume={72},
  number={5},
  note={Published: 19 November 2020 ; Gesehen am 02.06.2021 ; Im Titel ist KPC-2 tiefgestellt},
  journal={Clinical infectious diseases},
  doi={10.1093/cid/ciaa1734},
}
@article{UBHD-68917153,
  author={Klein, Sabrina and Morath, Benedict and Weitz, Daniel and Schweizer, Patrick Alexander and S{\"a}hr, Aline and Heeg, Klaus and Boutin, Sébastien and Nurjadi, Dennis},
  title={Comparative genomic reveals clonal heterogeneity in persistent staphylococcus aureus infection},
  year={2022},
  pages={1-10},
  language={eng},
  issn={2235-2988},
  volume={12},
  number={Artikel-ID 817841},
  note={Gesehen am 11.05.2022},
  journal={Frontiers in Cellular and Infection Microbiology},
  doi={10.3389/fcimb.2022.817841},
  url={https://doi.org/10.3389/fcimb.2022.817841},
  library={UB},
}
@article{UBHD-68653854,
  author={Klein, Sabrina and Hannesen, Julius and Zanger, Philipp and Heeg, Klaus and Boutin, Sébastien and Nurjadi, Dennis},
  title={Entry of Panton-Valentine leukocidin-positive methicillin-resistant Staphylococcus aureus into the hospital},
  subtitle={prevalence and population structure in Heidelberg, Germany 2015-2018},
  year={2020},
  pages={7 S.},
  language={eng},
  issn={2045-2322},
  volume={10(2020) Artikel-Nummer 13243},
  number={7 Seiten},
  note={Gesehen am 03.11.2020},
  journal={Scientific reports},
  doi={10.1038/s41598-020-70112-z},
  url={https://doi.org/10.1038/s41598-020-70112-z},
  library={UB},
}
@article{UBHD-68961692,
  author={Klein, Sabrina and Boutin, Sébastien and Heeg, Klaus and Zanger, Philipp and Nurjadi, Dennis},
  title={Genomic structure of ST8-t008 USA300 and USA300-LV MRSA in the Rhine-Neckar Region, Germany, 2012-2018},
  year={2021},
  pages={1-5},
  language={eng},
  issn={1872-7913},
  volume={57},
  note={Gesehen am 07.09.2022},
  journal={International journal of antimicrobial agents},
  doi={10.1016/j.ijantimicag.2021.106312},
}
@article{UBHD-68631437,
  author={Kocer, Kaan and Boutin, Sébastien and Dalpke, Alexander and Heeg, Klaus and Mutters, Nico T. and Nurjadi, Dennis},
  title={Comparative genomic analysis reveals a high prevalence of inter-species in vivo transfer of carbapenem-resistance plasmids in patients with haematological malignancies},
  year={2020},
  pages={780.e1-780.e8},
  language={eng},
  issn={1469-0691},
  volume={26},
  number={6},
  note={Available online 23 October 2019 ; Gesehen am 26.08.2020},
  journal={Clinical microbiology and infection},
  doi={10.1016/j.cmi.2019.10.014},
}
@article{UBHD-68660386,
  author={Kocer, Kaan and Boutin, Sébastien and Probst, Katja and Heeg, Klaus and Nurjadi, Dennis},
  title={Whole-genome sequencing disproves two suspected transmission events of blaNDM between Pseudomonas aeruginosa and Enterobacterales in hospitalized patients},
  year={2020},
  pages={372-375},
  language={eng},
  issn={1532-2939},
  volume={106},
  number={2},
  note={Im Titel ist "NDM" tiefgestellt ; Gesehen am 12.11.2020},
  journal={The journal of hospital infection},
  doi={10.1016/j.jhin.2020.07.006},
}
@article{UBHD-68871868,
  author={Kocer, Kaan and Klein, Sabrina and Hildebrand, Dagmar and Krall, Lars Johannes and Heeg, Klaus and Boutin, Sébastien and Nurjadi, Dennis},
  title={Pitfalls in genotypic antimicrobial susceptibility testing caused by low expression of blaKPC in Escherichia coli},
  year={2021},
  pages={2795-2801},
  language={eng},
  issn={1460-2091},
  volume={76},
  number={11},
  note={Gesehen am 28.01.2022},
  journal={The journal of antimicrobial chemotherapy},
  doi={10.1093/jac/dkab267},
}
@article{UBHD-68747064,
  author={Kolbe, Ulrike and Yi, Buqing and Poth, Tanja and Saunders, Amy and Boutin, Sébastien and Dalpke, Alexander},
  title={Early cytokine induction upon Pseudomonas aeruginosa infection in murine precision cut lung slices depends on sensing of bacterial viability},
  year={2020},
  pages={1-16},
  language={eng},
  issn={1664-3224},
  volume={11},
  number={Artikel-ID 598636},
  note={Gesehen am 10.06.2021},
  journal={Frontiers in immunology},
  doi={10.3389/fimmu.2020.598636},
}
@article{UBHD-68866163,
  author={Krall, Lars Johannes and Klein, Sabrina and Boutin, Sébastien and Wu, Chia Ching and S{\"a}hr, Aline and Stanifer, Megan and Boulant, Steeve and Heeg, Klaus and Nurjadi, Dennis and Hildebrand, Dagmar},
  title={Invasiveness of escherichia coli is associated with an IncFII plasmid},
  year={2021},
  pages={1-10},
  language={eng},
  issn={2076-0817},
  volume={10},
  note={Gesehen am 13.01.2022},
  journal={Pathogens},
  doi={10.3390/pathogens10121645},
}
@article{UBHD-68870951,
  author={Metzger, Marisa I. and Gr{\"a}ber, Simon Y. and Stahl, Mirjam and Sommerburg, Olaf and Mall, Marcus A. and Dalpke, Alexander and Boutin, Sébastien},
  title={A volatile and dynamic longitudinal microbiome is associated with less reduction in lung function in adolescents with cystic fibrosis},
  year={2021},
  pages={1-10},
  language={eng},
  issn={2235-2988},
  volume={11},
  number={Artikel-ID 763121},
  note={Gesehen am 26.01.2022},
  journal={Frontiers in Cellular and Infection Microbiology},
  doi={10.3389/fcimb.2021.763121},
  url={https://www.frontiersin.org/article/10.3389/fcimb.2021.763121},
  library={UB},
}
@article{UBHD-69306871,
  author={Michels, Ricarda and Papan, Cihan and Boutin, Sébastien and Alhussein, Farah and Becker, S{\"o}ren L. and Nurjadi, Dennis and Last, Katharina},
  title={Clinical relevance of Staphylococcus saccharolyticus detection in human samples},
  subtitle={a retrospective cohort study},
  year={2025},
  pages={145-153},
  language={eng},
  issn={1439-0973},
  volume={53},
  number={1},
  note={Online ver{\"o}ffentlicht: 4. Juli 2024 ; Gesehen am 21.02.2025},
  journal={Infection},
  doi={10.1007/s15010-024-02334-6},
}
@article{UBHD-69131706,
  author={Mirhakkak Esfahani, Mohammadhassan and Chen, Xiuqiang and Ni, Yueqiong and Heinekamp, Thorsten and Sae-Ong, Tongta and Xu, Lin-Lin and Kurzai, Oliver and Barber, Amelia E. and Brakhage, Axel A. and Boutin, Sébastien and Sch{\"a}uble, Sascha and Panagiotou, Gianni},
  title={Genome-scale metabolic modeling of Aspergillus fumigatus strains reveals growth dependencies on the lung microbiome},
  year={2023},
  pages={1-17},
  language={eng},
  issn={2041-1723},
  volume={14},
  number={Artikel-ID 4369},
  note={Ver{\"o}ffentlicht: 20. Juli 2023 ; Gesehen am 19.10.2023},
  journal={Nature Communications},
  doi={10.1038/s41467-023-39982-5},
}
@article{UBHD-68872117,
  author={Muhandes, Lina and Chapsa, Maria and Pippel, Martin and Behrendt, Rayk and Ge, Yan and Dahl, Andreas and Yi, Buqing and Dalpke, Alexander and Winkler, Sylke and Hiller, Michael and Boutin, Sébastien and Beissert, Stefan and Jessberger, Rolf and Fallon, Padraic G. and Roers, Axel},
  title={Low threshold for cutaneous allergen sensitization but no spontaneous dermatitis or atopy in FLG-deficient mice},
  year={2021},
  pages={11 S.},
  language={eng},
  issn={1523-1747},
  volume={141},
  note={Gesehen am 29.01.2022},
  journal={The journal of investigative dermatology},
  doi={10.1016/j.jid.2021.02.763},
}
@article{UBHD-68286957,
  author={Nurjadi, Dennis and Boutin, Sébastien and Dalpke, Alexander and Heeg, Klaus and Zanger, Philipp},
  title={Draft genome sequence of Staphylococcus aureus strain HD1410, isolated from a persistent nasal carrier},
  year={2018},
  language={eng},
  issn={2169-8287},
  volume={6(2018},
  note={Gesehen am 19.07.2018},
  journal={Genome announcements},
  doi={10.1128/genomeA.00411-18},
  url={http://dx.doi.org/10.1128/genomeA.00411-18},
  library={UB},
}
@article{UBHD-68664243,
  author={Nurjadi, Dennis and Boutin, Sébastien and Schmidt, Katja and Ahmels, Melinda and Hasche, Daniel},
  title={Identification and elimination of the clinically relevant multi-resistant environmental bacteria Ralstonia insidiosa in primary cell culture},
  year={2020},
  pages={12 S.},
  language={eng},
  issn={2076-2607},
  volume={8(2020},
  note={Gesehen am 23.10.2020},
  journal={Microorganisms},
  doi={10.3390/microorganisms8101599},
}
@article{UBHD-68688536,
  author={Nurjadi, Dennis and Heeg, Klaus and Boutin, Sébastien},
  title={Integrative analysis of whole genome sequencing and phenotypic resistance toward prediction of trimethoprim-sulfamethoxazole resistance in staphylococcus aureus},
  year={2021},
  pages={7 S.},
  language={eng},
  issn={1664-302X},
  volume={11(2021) Artikel-Nummer 607842},
  number={7 Seiten},
  note={Gesehen am 04.02.2021},
  journal={Frontiers in microbiology},
  doi={10.3389/fmicb.2020.607842},
  url={https://doi.org/10.3389/fmicb.2020.607842},
  library={UB},
}
@article{UBHD-68961930,
  author={Nurjadi, Dennis and Klein, Sabrina and Hannesen, Julius and Heeg, Klaus and Boutin, Sébastien and Zanger, Philipp},
  title={Molecular analysis of an increase in trimethoprim/sulfamethoxazole-resistant MRSA reveals multiple introductions into a tertiary care hospital, Germany 2012-19},
  year={2022},
  pages={38-48},
  language={eng},
  issn={1460-2091},
  volume={77},
  number={1 vom: Jan.},
  note={Advance access publication 16 September 2021 ; Gesehen am 08.09.2022},
  journal={The journal of antimicrobial chemotherapy},
  doi={10.1093/jac/dkab341},
}
@article{UBHD-69133630,
  author={Nurjadi, Dennis and Eichel, Vanessa and P{\"o}schl, Johannes and Gille, Christian and Kranig, Simon A. and Heeg, Klaus and Boutin, Sébastien},
  title={Monocentric observational cohort study to investigate the transmission of third-generation cephalosporin-resistant Enterobacterales in a neonatal intensive care unit in Heidelberg, Germany},
  year={2023},
  pages={1-11},
  language={eng},
  issn={2165-0497},
  volume={11},
  note={Online ver{\"o}ffentlicht: 22. September 2023 ; Gesehen am 25.10.2023},
  journal={Microbiology spectrum},
  doi={10.1128/spectrum.02038-23},
}
@article{UBHD-68575874,
  author={Nurjadi, Dennis and Last, Katharina and Klein, Sabrina and Boutin, Sébastien and Schmack, Bastian and M{\"u}ller, Florian and Heeg, Klaus and Ruhparwar, Arjang and Heininger, Alexandra and Zanger, Philipp},
  title={Nasal colonization with Staphylococcus aureus is a risk factor for ventricular assist device infection in the first year after implantation},
  subtitle={a prospective, single-centre, cohort study},
  year={2020},
  pages={511-518},
  language={eng},
  issn={1532-2742},
  volume={80},
  number={5},
  note={Gesehen am 12.05.2020},
  journal={Journal of infection},
  doi={10.1016/j.jinf.2020.02.015},
}
@article{UBHD-68917152,
  author={Nurjadi, Dennis and Kocer, Kaan and Chanthalangsy, Quan and Klein, Sabrina and Heeg, Klaus and Boutin, Sébastien},
  title={New Delhi metallo-beta-lactamase facilitates the emergence of cefiderocol resistance in Enterobacter cloacae},
  year={2022},
  pages={1-11},
  language={eng},
  issn={1098-6596},
  volume={66},
  note={Gesehen am 11.05.2022},
  journal={Antimicrobial agents and chemotherapy},
  doi={10.1128/aac.02011-21},
}
@article{UBHD-68862536,
  author={Nurjadi, Dennis and Chanthalangsy, Quan and Zizmann, Elfi and St{\"u}rmer, Vanessa S. and Moll, Maximilian and Klein, Sabrina and Boutin, Sébastien and Heeg, Klaus and Zanger, Philipp},
  title={Phenotypic detection of hemin-inducible trimethoprim-sulfamethoxazole heteroresistance in staphylococcus aureus},
  year={2021},
  pages={1-10},
  language={eng},
  issn={2165-0497},
  volume={9},
  note={Gesehen am 04.01.2022},
  journal={Microbiology spectrum},
  doi={10.1128/Spectrum.01510-21},
}
@article{UBHD-68790143,
  author={Nurjadi, Dennis and Eichel, Vanessa and Tabatabai, Patrik and Klein, Sabrina and Last, Katharina and Mutters, Nico T. and P{\"o}schl, Johannes and Zanger, Philipp and Heeg, Klaus and Boutin, Sébastien},
  title={Surveillance for colonization, transmission, and infection with methicillin-susceptible staphylococcus aureus in a neonatal intensive care unit},
  year={2021},
  pages={1-13},
  language={eng},
  issn={2574-3805},
  volume={4},
  note={Gesehen am 14.10.2021},
  journal={JAMA network open},
  doi={10.1001/jamanetworkopen.2021.24938},
  url={https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2783982},
  library={UB},
}
@article{UBHD-68979362,
  author={Pallerla, Srinivas Reddy and Van Dong, Do and Linh, Le Thi Kieu and Van Son, Trinh and Quyen, Dao Thanh and Hoan, Phan Quoc and Trung, Ngo Tat and The, Nguyen Trong and R{\"u}ter, Jule and Boutin, Sébastien and Nurjadi, Dennis and Sy, Bui Tien and Kremsner, Peter G. and Meyer, Christian G. and Song, Le Huu and Velavan, Thirumalaisamy P.},
  title={Diagnosis of pathogens causing bacterial meningitis using Nanopore sequencing in a resource-limited setting},
  year={2022},
  pages={1-8},
  language={eng},
  issn={1476-0711},
  volume={21(2022) vom: Sept.},
  number={Artikel-ID 39},
  note={Gesehen am 27.10.2022},
  journal={Annals of clinical microbiology and antimicrobials},
  doi={10.1186/s12941-022-00530-6},
}
@article{UBHD-68803218,
  author={Probst, Katja and Boutin, Sébastien and Sp{\"a}th, Isabel and Scherrer, Martin and Henny, Nicole and Sahin, Delal and Heininger, Alexandra and Heeg, Klaus and Nurjadi, Dennis},
  title={Direct-PCR from rectal swabs and environmental reservoirs},
  subtitle={a fast and efficient alternative to detect blaOXA-48 carbapenemase genes in an Enterobacter cloacae outbreak setting},
  year={2022},
  pages={1-5},
  language={eng},
  issn={1096-0953},
  volume={203(2022) vom: Jan.},
  number={Artikel-ID 111808},
  note={Available online 31 July 2021 ; Im Titel Zusatz zum Titel ist "OXA-48" tiefgestellt ; Gesehen am 18.11.2021},
  journal={Environmental research},
  doi={10.1016/j.envres.2021.111808},
}
@article{UBHD-68764346,
  author={Probst, Katja and Boutin, Sébastien and Bandilla, Michael and Heeg, Klaus and Dalpke, Alexander},
  title={Fast and automated detection of common carbapenemase genes using multiplex real-time PCR on the BD MAXTM system},
  year={2021},
  pages={1-7},
  language={eng},
  issn={1872-8359},
  volume={185(2021) vom: Juni},
  number={Artikel-ID 106224},
  note={Gesehen am 28.07.2021 ; Im Titel ist "TM" hochgestellt},
  journal={Journal of microbiological methods},
  doi={10.1016/j.mimet.2021.106224},
}
@article{UBHD-68767427,
  author={Probst, Katja and Nurjadi, Dennis and Heeg, Klaus and Frede, Anne-Marie and Dalpke, Alexander and Boutin, Sébastien},
  title={Molecular detection of carbapenemases in enterobacterales},
  subtitle={a comparison of real-time multiplex PCR and whole-genome sequencing},
  year={2021},
  pages={1-8},
  language={eng},
  issn={2079-6382},
  volume={10},
  note={Gesehen am 05.08.2021},
  journal={Antibiotics},
  doi={10.3390/antibiotics10060726},
}
@book{UBHD-68390415,
  author={Schmitt, Felix and Brenner, Thorsten and Uhle, Florian and Loesch, Svenja and Hackert, Thilo and Ulrich, Alexis and Dalpke, Alexander and Weigand, Markus A. and Boutin, Sébastien},
  title={Gut microbiome patterns correlate with higher postoperative complication rates after pancreatic surgery},
  publisher={BioMed Central ; Springer},
  address={London ; Berlin ; Heidelberg},
  year={2019},
  pages={1 Online-Ressource (13 Seiten)},
  language={eng},
  note={In: BMC Microbiology, 19 (2019), Nr. 42. pp. 1-13. ISSN 1471-2180},
  doi={10.1186/s12866-019-1399-5},
  url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-261263},
  library={UB},
}
@article{UBHD-68394410,
  author={Schmitt, Felix and Brenner, Thorsten and Uhle, Florian and Loesch, Svenja and Hackert, Thilo and Ulrich, Alexis and Dalpke, Alexander and Weigand, Markus A. and Boutin, Sébastien},
  title={Gut microbiome patterns correlate with higher postoperative complication rates after pancreatic surgery},
  year={2019},
  language={eng},
  issn={1471-2180},
  volume={19(2019) Artikel-Nummer 42},
  number={13 Seiten},
  note={Gesehen am 31.05.2019},
  journal={BMC microbiology},
  doi={10.1186/s12866-019-1399-5},
  url={https://doi.org/10.1186/s12866-019-1399-5},
  library={UB},
}
@article{UBHD-68730362,
  author={Schmitt, Felix and Schneider, Martin and Mathejczyk, William and Weigand, Markus A. and Figueiredo, Jane C. and Li, Christopher I. and Shibata, David and Siegel, Erin M. and Toriola, Adetunji T. and Ulrich, Cornelia M. and Ulrich, Alexis and Boutin, Sébastien and Gigić, Biljana},
  title={Postoperative complications are associated with long-term changes in the gut microbiota following colorectal cancer surgery},
  year={2021},
  pages={1-10},
  language={eng},
  issn={2075-1729},
  volume={11},
  note={Gesehen am 29.04.2021},
  journal={Life},
  doi={10.3390/life11030246},
}
@article{UBHD-68627506,
  author={Schmitt, Felix and Lipinski, Anna and Hofer, Stefan and Uhle, Florian and Nußhag, Christian and Hackert, Thilo and Dalpke, Alexander and Weigand, Markus A. and Brenner, Thorsten and Boutin, Sébastien},
  title={Pulmonary microbiome patterns correlate with the course of disease in patients with sepsis-induced ARDS following major abdominal surgery},
  year={2020},
  pages={438-446},
  language={eng},
  issn={1532-2939},
  volume={105},
  number={3},
  note={Gesehen am 14.08.2020},
  journal={The journal of hospital infection},
  doi={10.1016/j.jhin.2020.04.028},
}
@article{UBHD-68423289,
  author={Schoilew, Kyrill and Dalpke, Alexander and Wolff, Bj{\"o}rn and Frese, Cornelia and Boutin, Sébastien},
  title={Bacterial biofilm composition in healthy subjects with and without caries experience},
  year={2019},
  pages={9 S.},
  language={eng},
  issn={2000-2297},
  volume={11(2019},
  note={Gesehen am 22.08.2019},
  journal={Journal of oral microbiology},
  doi={10.1080/20002297.2019.1633194},
}
@article{UBHD-68930209,
  author={Sekundo, Caroline and Langowski, Eva and Wolff, Diana and Boutin, Sébastien and Frese, Cornelia},
  title={Maintaining oral health for a hundred years and more?},
  subtitle={An analysis of microbial and salivary factors in a cohort of centenarians},
  year={2022},
  pages={1-14},
  language={eng},
  issn={2000-2297},
  volume={14},
  note={Published online: 04 Apr 2022 ; Gesehen am 13.06.2022},
  journal={Journal of oral microbiology},
  doi={10.1080/20002297.2022.2059891},
}
@article{UBHD-68687461,
  author={S{\"o}rensen, Michael and Khakimov, Bakhodur and Nurjadi, Dennis and Boutin, Sébastien and Yi, Buqing and Dalpke, Alexander and Eigenbrod, Tatjana},
  title={Comparative evaluation of the effect of different growth media on in vitro sensitivity to azithromycin in multi-drug resistant pPseudomonas aeruginosa isolated from cystic fibrosis patients},
  year={2020},
  pages={7 S.},
  language={eng},
  issn={2047-2994},
  volume={9(2020) Artikel-Nummer 197},
  number={7 Seiten},
  note={Gesehen am 02.02.2020},
  journal={Antimicrobial resistance and infection control},
  doi={10.1186/s13756-020-00859-7},
}
@article{UBHD-68653273,
  author={S{\"o}rensen, Michael and Boutin, Sébastien and Mall, Marcus A. and Lasitschka, Felix and Dalpke, Alexander},
  title={Corrigendum: Pseudomonas aeruginosa modulates the antiviral response of bronchial epithelial cells},
  year={2020},
  pages={2 S.},
  language={eng},
  issn={1664-3224},
  volume={11(2020) Artikel-Nummer 1453},
  number={2 Seiten},
  note={Gesehen am 23.10.2020},
  journal={Frontiers in immunology},
  doi={10.3389/fimmu.2020.01453},
}
@article{UBHD-68559774,
  author={S{\"o}rensen, Michael and Boutin, Sébastien and Mall, Marcus A. and Lasitschka, Felix and Dalpke, Alexander},
  title={Pseudomonas aeruginosa modulates the antiviral response ofbBronchial epithelial cells},
  year={2020},
  pages={14 S.},
  language={eng},
  issn={1664-3224},
  volume={11(2020) Artikel-Nummer 96},
  number={14 Seiten},
  note={Gesehen am 31.03.2020},
  journal={Frontiers in immunology},
  doi={10.3389/fimmu.2020.00096},
}
@article{UBHD-69267797,
  author={Tony-Odigie, Andrew and Dalpke, Alexander and Boutin, Sébastien and Yi, Buqing},
  title={Airway commensal bacteria in cystic fibrosis inhibit the growth of P. aeruginosa via a released metabolite},
  year={2024},
  pages={127680-1-127680-11},
  language={eng},
  issn={1618-0623},
  volume={283},
  number={Artikel-ID 127680},
  note={Gesehen am 28.10.2024},
  journal={Microbiological research},
  doi={10.1016/j.micres.2024.127680},
}
@article{UBHD-68895835,
  author={Tony-Odigie, Andrew and Wilke, Leonie and Boutin, Sébastien and Dalpke, Alexander and Yi, Buqing},
  title={Commensal bacteria in the cystic fibrosis airway microbiome reduce P. aeruginosa induced inflammation},
  year={2022},
  pages={1-13},
  language={eng},
  issn={2235-2988},
  volume={12},
  number={Artikel-ID 824101},
  note={Gesehen am 17.03.2022},
  journal={Frontiers in Cellular and Infection Microbiology},
  doi={10.3389/fcimb.2022.824101},
}
@article{UBHD-68804893,
  author={Tourelle, Kevin M. and Boutin, Sébastien and Weigand, Markus A. and Schmitt, Felix},
  title={The association of gut microbiota and complications in gastrointestinal-cancer therapies},
  year={2021},
  pages={1-20},
  language={eng},
  issn={2227-9059},
  volume={9},
  note={Gesehen am 24.11.2021},
  journal={Biomedicines},
  doi={10.3390/biomedicines9101305},
}
@article{UBHD-69194439,
  author={Welker, Sybille and Boutin, Sébastien and Miethke, Thomas and Heeg, Klaus and Nurjadi, Dennis},
  title={Emergence of carbapenem-resistant ST131 Escherichia coli carrying blaOXA-244 in Germany, 2019 to 2020},
  year={2020},
  pages={1-8},
  language={eng},
  issn={1560-7917},
  volume={25},
  note={Im Titel ist "OXA-244 " tiefgestellt ; Gesehen am 22.03.2024},
  journal={Eurosurveillance},
  doi={10.2807/1560-7917.ES.2020.25.46.2001815},
}
@article{UBHD-68460839,
  author={Wolff, Diana and Frese, Cornelia and Schoilew, Kyrill and Boutin, Sébastien},
  title={Amplicon-based microbiome study highlights the loss of diversity and the establishment of a set of species in patients with dentin caries},
  year={2019},
  pages={16 S.},
  language={eng},
  issn={1932-6203},
  volume={14(2019},
  note={Gesehen am 27.11.2019},
  journal={PLOS ONE},
  doi={10.1371/journal.pone.0219714},
}
@article{UBHD-68741265,
  author={Yi, Buqing and Dalpke, Alexander and Boutin, Sébastien},
  title={Changes in the cystic fibrosis airway microbiome in response to CFTR modulator therapy},
  year={2021},
  pages={1-7},
  language={eng},
  issn={2235-2988},
  volume={11},
  number={Artikel-ID 548613},
  note={Gesehen am 26.05.2021},
  journal={Frontiers in Cellular and Infection Microbiology},
  doi={10.3389/fcimb.2021.548613},
}
@article{UBHD-68787901,
  author={Zimmer, Jana and Weitnauer, Michael and Boutin, Sébastien and K{\"u}blbeck, G{\"u}nter and Thiele, Sabrina and Walker, Patrick and Lasitschka, Felix and Lunding, Lars and Orinska, Zane and Vock, Christina and Arnold, Bernd and Wegmann, Michael and Dalpke, Alexander},
  title={Nuclear localization of suppressor of cytokine signaling-1 regulates local immunity in the lung},
  year={2016},
  pages={1-17},
  language={eng},
  issn={1664-3224},
  volume={7},
  number={Artikel-ID 514},
  note={Gesehen am 08.10.2021},
  journal={Frontiers in immunology},
  doi={10.3389/fimmu.2016.00514},
}