@incollection{UBHD-68941144, author={Bailoni, Alberto and Pape, Constantin and Wolf, Steffen and Kreshuk, Anna and Hamprecht, Fred}, title={Proposal-free volumetric instance segmentation from latent single-instance masks}, year={2020}, pages={1-20}, language={eng}, note={Gesehen am 13.07.2022}, booktitle={Arxiv}, doi={10.48550/arXiv.2009.04998}, } @article{UBHD-68112394, author={Beier, Thorsten and Pape, Constantin and Rahaman, Nasim and Prange, Timo and K{\"o}the, Ullrich and Kreshuk, Anna and Hamprecht, Fred}, title={Multicut brings automated neurite segmentation closer to human performance}, year={2017}, pages={101-102}, language={eng}, issn={1548-7105}, volume={14}, number={2}, note={Gesehen am 24.04.2017}, journal={Nature methods}, doi={10.1038/nmeth.4151}, } @article{UBHD-68679171, author={Cortese, Mirko and Lee, Ji Young and Cerikan, Berati and Neufeldt, Christopher and Oorschot, Viola M. J. and K{\"o}hrer, Sebastian and Hennies, Julian and Schieber, Nicole L. and Ronchi, Paolo and Mizzon, Giulia and Romero-Brey, Inés and Santarella-Mellwig, Rachel and Schorb, Martin and Boermel, Mandy and Mocaer, Karel and Beckwith, Marianne S. and Templin, Rachel M. and Gross, Viktoriia and Pape, Constantin and Tischer, Christian and Frankish, Jamie and Horvat, Natalie and Laketa, Vibor and Stanifer, Megan and Boulant, Steeve and Ruggieri, Alessia and Chatel-Chaix, Laurent and Schwab, Yannick and Bartenschlager, Ralf}, title={Integrative imaging reveals SARS-CoV-2-induced reshaping of subcellular morphologies}, year={2020}, pages={853-866.e5}, language={eng}, issn={1934-6069}, volume={28}, number={6}, note={Gesehen am 12.01.2021}, journal={Cell host and microbe}, doi={10.1016/j.chom.2020.11.003}, } @article{UBHD-68793659, author={Martínez Vergara, Hernando and Pape, Constantin and Meechan, Kimberly and Zinchenko, Valentyna and Genoud, Christel and Wanner, Adrian A. and Mutemi, Kevin Nzumbi and Titze, Benjamin and Templin, Rachel M. and Bertucci, Paola Y. and Simakov, Oleg and D{\"u}richen, Wiebke and Machado, Pedro and Savage, Emily L. and Schermelleh, Lothar and Schwab, Yannick and Friedrich, Rainer W. and Kreshuk, Anna and Tischer, Christian and Arendt, Detlev}, title={Whole-body integration of gene expression and single-cell morphology}, year={2021}, pages={4819-4837.e22}, language={eng}, issn={1097-4172}, volume={184}, number={18}, note={Gesehen am 26.10.2021}, journal={Cell}, doi={10.1016/j.cell.2021.07.017}, } @article{UBHD-68863842, author={Musser, Jacob M. and Schippers, Klaske J. and Nickel, Michael and Mizzon, Giulia and Kohn, Andrea B. and Pape, Constantin and Ronchi, Paolo and Papadopoulos, Nikolaos and Tarashansky, Alexander J. and Hammel, J{\"o}rg Ulrich and Wolf, Florian and Liang, Cong and Hernández-Plaza, Ana and Cantalapiedra, Carlos P. and Achim, Kaia and Schieber, Nicole L. and Pan, Leslie and Ruperti, Fabian and Francis, Warren R. and Vargas Ramírez, Sergio and Kling, Svenja and Renkert, Maike and Polikarpov, Maxim and Bourenkov, Gleb and Feuda, Roberto and Gaspar, Imre and Burkhardt, Pawel and Wang, Bo and Bork, Peer and Beck, Martin and Schneider, Thomas R. and Kreshuk, Anna and W{\"o}rheide, Gert and Huerta-Cepas, Jaime and Schwab, Yannick and Moroz, Leonid L. and Arendt, Detlev}, title={Profiling cellular diversity in sponges informs animal cell type and nervous system evolution}, year={2021}, pages={717-723}, language={eng}, issn={1095-9203}, volume={374}, number={6568}, note={Gesehen am 22.04.2022}, journal={Science}, doi={10.1126/science.abj2949}, } @article{UBHD-68807440, author={Pape, Constantin and Remme, Roman and Wolny, Adrian and Olberg, Sylvia and Wolf, Steffen and Cerrone, Lorenzo and Cortese, Mirko and Klaus, Severina and Lucic, Bojana and Ullrich, Stephanie and Anders-{\"O}ßwein, Maria and Wolf, Stefanie and Cerikan, Berati and Neufeldt, Christopher and Ganter, Markus and Schnitzler, Paul and Merle, Uta and Lusic, Marina and Boulant, Steeve and Stanifer, Megan and Bartenschlager, Ralf and Hamprecht, Fred and Kreshuk, Anna and Tischer, Christian and Kr{\"a}usslich, Hans-Georg and M{\"u}ller, Barbara and Laketa, Vibor}, title={Microscopy-based assay for semi-quantitative detection of SARS-CoV-2 specific antibodies in human sera}, year={2021}, pages={1-15}, language={eng}, issn={1521-1878}, volume={43}, note={First published: 30 December 2020 ; Gesehen am 02.12.2021}, journal={Bioessays}, doi={10.1002/bies.202000257}, url={https://doi.org/10.1002/bies.202000257}, library={UB}, } @article{UBHD-69046793, author={Pape, Constantin and Meechan, Kimberly and Moreva, Ekaterina and Schorb, Martin and Chiaruttini, Nicolas and Zinchenko, Valentyna and Martinez Vergara, Hernando and Mizzon, Giulia and Moore, Josh and Arendt, Detlev and Kreshuk, Anna and Schwab, Yannick and Tischer, Christian}, title={MoBIE}, subtitle={a Fiji plugin for sharing and exploration of multi-modal cloud-hosted big image data}, year={2023}, pages={1-2}, language={eng}, issn={1548-7105}, volume={20}, note={Gesehen am 02.03.2023}, journal={Nature methods}, doi={10.1038/s41592-023-01776-4}, } @book{UBHD-68756376, author={Pape, Constantin}, title={Scalable instance segmentation for microscopy}, address={Heidelberg}, year={2021}, pages={1 Online-Ressource (172 Seiten)}, language={eng}, school={Dissertation, Heidelberg University, 2021}, doi={10.11588/heidok.00030147}, url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-301471}, library={UB}, } @book{UBHD-68768529, author={Pape, Constantin}, organization={Universit{\"a}t Heidelberg}, title={Scalable instance segmentation for microscopy}, address={Heidelberg}, year={2021}, pages={171 Seiten}, language={eng}, school={Dissertation, Heidelberg University, 2021}, library={UB [Signatur: 2021 U 684]}, } @article{UBHD-68697209, author={T{\"o}nshoff, Burkhard and M{\"u}ller, Barbara and Elling, Roland and Renk, Hanna and Meissner, Peter and Hengel, Hartmut and Garbade, Sven and Kieser, Meinhard and Jeltsch, Kathrin and Grulich-Henn, J{\"u}rgen and Euler, Julia and Stich, Maximilian and Chobanyan-J{\"u}rgens, Kristine and Zernickel, Maria and Janda, Aleš and W{\"o}lfle, Lena and Stamminger, Thomas and Iftner, Thomas and Ganzenmueller, Tina and Schmitt, Christian and G{\"o}rne, Tessa and Laketa, Vibor and Olberg, Sylvia and Plaszczyca, Anna and Cortese, Mirko and Bartenschlager, Ralf and Pape, Constantin and Remme, Roman and Huzly, Daniela and Panning, Marcus and Weigang, Sebastian and Giese, Sebastian and Ciminski, Kevin and Ankerhold, Jakob and Engel, Corinna and Hoffmann, Georg F. and Kr{\"a}usslich, Hans-Georg}, title={Prevalence of SARS-CoV-2 infection in children and their parents in southwest Germany}, year={2021}, pages={586-593}, language={eng}, issn={2168-6211}, volume={175}, number={6}, note={Gesehen am 09.02.2021}, journal={JAMA pediatrics}, doi={10.1001/jamapediatrics.2021.0001}, } @article{UBHD-68793117, author={Wolf, Steffen and Bailoni, Alberto and Pape, Constantin and Rahaman, Nasim and Kreshuk, Anna and K{\"o}the, Ullrich and Hamprecht, Fred}, title={The mutex Watershed and its objective}, subtitle={efficient, parameter-free graph partitioning}, year={2021}, pages={3724-3738}, language={eng}, issn={1939-3539}, volume={43}, number={10}, note={Date of publication 16 Mar. 2020 ; Gesehen am 25.10.2021}, journal={IEEE transactions on pattern analysis and machine intelligence}, doi={10.1109/TPAMI.2020.2980827}, } @article{UBHD-68653796, author={Wolny, Adrian and Cerrone, Lorenzo and Vijayan, Athul and Tofanelli, Rachele and Vilches-Barro, Amaya and Louveaux, Marion and Wenzl, Christian and Strauss, S{\"o}ren and Wilson-Sánchez, David and Lymbouridou, Rena and Steigleder, Susanne S. and Pape, Constantin and Bailoni, Alberto and Duran-Nebreda, Salva and Bassel, George W and Lohmann, Jan U. and Tsiantis, Miltos and Hamprecht, Fred and Schneitz, Kay and Maizel, Alexis and Kreshuk, Anna}, title={Accurate and versatile 3D segmentation of plant tissues at cellular resolution}, year={2020}, pages={35 S.}, language={eng}, issn={2050-084X}, volume={9(2020) Artikel-Nummer e57613}, number={35 Seiten}, note={Gesehen am 26.10.2020}, journal={eLife}, doi={10.7554/eLife.57613}, }