@article{UBHD-67470428, author={Albano, Ezequiel V. and Heermann, Dieter W.}, title={Adsorption on stepped surfaces}, subtitle={a Monte Carlo simulation}, year={1989}, pages={151-178}, language={eng}, issn={1879-2758}, volume={223}, number={1/2}, note={Gesehen am 12.09.2013}, journal={Surface science}, doi={10.1016/0039-6028(89)90731-0}, } @article{UBHD-68152205, author={Albano, Ezequiel V. and Heermann, Dieter W.}, title={Critical wetting in the square Ising model with a boundary field}, year={1990}, pages={161-178}, language={eng}, issn={1572-9613}, volume={61}, number={1-2}, note={Gesehen am 21.08.2017}, journal={Journal of statistical physics}, doi={10.1007/BF01013958}, } @article{UBHD-67470427, author={Albano, Ezequiel V. and Heermann, Dieter W.}, title={The Ising square lattice in a L x M geometry}, subtitle={a model for the effect of surface steps on phase transitions in adsorbed monolayers}, year={1989}, pages={445-460}, language={eng}, issn={1431-584X}, volume={77}, note={Gesehen am 01.02.2018}, journal={Zeitschrift f{\"u}r Physik}, } @article{UBHD-67459484, author={Albano, Ezequiel V. and Heermann, Dieter W.}, title={Kinetics of domain growth in finite Ising strips}, year={1992}, pages={130-147}, language={eng}, issn={1873-2119}, volume={183}, number={1/2}, note={Gesehen am 15.08.2013}, journal={Physica}, doi={10.1016/0378-4371(92)90181-O}, } @article{UBHD-67470429, author={Albano, Ezequiel V. and Heermann, Dieter W.}, title={Shift of first‐order phase transitions in thin films due to boundary fields}, subtitle={a computer simulation}, year={1989}, pages={3700-3706}, language={eng}, issn={1089-7690}, volume={91}, number={6}, note={Gesehen am 12.09.2013}, journal={The journal of chemical physics}, doi={10.1063/1.456851}, } @article{UBHD-67466627, author={Baumg{\"a}rtner, Artur and Heermann, Dieter W.}, title={Spinodal decomposition of polymer films}, year={1986}, pages={1777-1780}, language={eng}, issn={1873-2291}, volume={27}, number={11}, note={Gesehen am 03.09.2013}, journal={Polymer}, doi={10.1016/0032-3861(86)90276-4}, } @article{UBHD-67444033, author={Bentele, Martin and Lavrik, Inna N. and Heermann, Dieter W. and Krammer, Peter H. and Eils, Roland}, title={Mathematical modeling reveals threshold mechanism in CD95-induced apoptosis}, year={2004}, pages={839-851}, language={eng}, issn={1540-8140}, volume={166}, number={6}, note={Gesehen am 06.04.2021}, journal={The journal of cell biology}, doi={10.1083/jcb.200404158}, } @incollection{UBHD-67460090, author={Binder, Kurt and Heermann, Dieter W.}, title={Computer simulation of the glass transition of polymer melts}, year={1993}, pages={5-7}, language={eng}, issn={1437-8027}, note={Gesehen am 16.08.2013}, booktitle={Progress in colloid & polymer science}, doi={10.1051/jp1:1992275}, } @incollection{UBHD-67480536, author={Binder, Kurt and Heermann, Dieter W.}, title={Dynamics of formation of ordered domains out of disordred configurations}, year={1987}, pages={154-189}, language={eng}, isbn={9783540177777}, booktitle={Heidelberg Colloquium on Glassy Dynamics}, doi={10.1007/BFb0057516}, } @incollection{UBHD-67484128, author={Binder, Kurt and Heermann, Dieter W.}, title={Growth of domains and scaling in the late stages of phase separation}, year={1985}, pages={207-230}, language={eng}, isbn={978-1-4757-1402-9}, booktitle={Scaling Phenomena in Disordered Systems}, } @incollection{UBHD-67482513, author={Binder, Kurt and Heermann, Dieter W.}, title={Growth of domains and scaling in the late stages of phase separation}, year={1985}, pages={207-230}, language={eng}, isbn={0-306-42112-7 and 978-0-306-42112-9}, booktitle={Scaling Phenomena in disordered systems}, editor={Pynn, Roger and Skjeltorp, Arne T.}, } @incollection{UBHD-67649992, author={Binder, Kurt and Heermann, Dieter W.}, title={The Monte Carlo method in condensed matter physics}, year={1992}, pages={392$p? S.}, language={eng}, isbn={3-540-54369-4 and 0-387-54369-4 and 978-3-540-54369-5 and 978-0-387-54369-7}, booktitle={The Monte Carlo method in condensed matter physics}, editor={Binder, Kurt}, } @book{UBHD-19971641, author={Binder, Kurt and Heermann, Dieter W.}, title={Monte Carlo simulation in statistical physics}, subtitle={an introduction}, edition={3rd ed.}, publisher={Springer}, address={Berlin ; Heidelberg [u.a.]}, year={1997}, pages={X, 150 S.}, language={eng}, isbn={3-540-63265-4 and 978-3-540-63265-8}, number={ARRAY(0x5602ccd42940)}, series={Springer series in solid-state sciences}, note={Literaturverz. S. 139 - 148}, keywords={Statistische Physik / Monte-Carlo-Simulation}, library={PY [Signatur: PY/UG 3100 B612(3)]}, } @book{UBHD-65503792, author={Binder, Kurt and Heermann, Dieter W.}, title={Monte Carlo simulation in statistical physics}, subtitle={an introduction}, edition={4th, enl. ed.}, publisher={Springer}, address={Berlin ; Heidelberg ; New York, NY ; Barcelona ; Hong Kong ; London ; Milan ; Paris ; Tokyo}, year={2002}, pages={XII, 180 S.}, language={eng}, isbn={978-3-540-43221-0 and 3-540-43221-3}, number={ARRAY(0x5602cccfa2f8)}, series={Springer series in solid-state sciences}, note={Literaturangaben S. [165] - 174}, keywords={Statistische Physik / Monte-Carlo-Simulation}, } @book{UBHD-66947489, author={Binder, Kurt and Heermann, Dieter W.}, title={Monte Carlo simulation in statistical physics}, subtitle={an introduction}, edition={5. ed.}, publisher={Springer}, address={Berlin ; Heidelberg}, year={2010}, pages={XIV, 200 S}, language={eng}, isbn={978-3-642-03162-5}, series={Graduate texts in physics}, keywords={Statistische Physik / Monte-Carlo-Simulation}, library={UB [Signatur: LN-T 1-8979::(5)] ; UB [Signatur: UBN/UG 3100 B612(5)] ; PY [Signatur: PY/UG 3100 B612(5)]}, } @book{UBHD-67436483, author={Binder, Kurt and Heermann, Dieter W.}, title={Monte Carlo Simulation in Statistical Physics}, subtitle={An Introduction}, publisher={Springer-Verlag Berlin Heidelberg}, address={Berlin, Heidelberg}, year={2010}, pages={Online-Ressource (XIV, 200 p, digital)}, language={eng}, isbn={978-3-642-03163-2 and 1-280-38192-2 and 978-1-280-38192-8}, series={Graduate Texts in Physics ; 0}, note={Includes bibliographical references and index}, doi={10.1007/978-3-642-03163-2}, keywords={Statistische Physik / Monte-Carlo-Simulation ; Statistische Physik / Monte-Carlo-Simulation}, } @book{UBHD-68647762, author={Binder, Kurt and Heermann, Dieter W.}, title={Monte Carlo simulation in statistical physics}, subtitle={an introduction}, edition={Sixth edition}, publisher={Springer}, address={Cham, Switzerland}, year={2019}, pages={xvii, 258 Seiten}, language={eng}, isbn={978-3-030-10757-4 and 3-030-10757-4}, series={Graduate texts in physics}, note={Includes bibliographical references (pages 235-252) and index}, doi={10.1007/978-3-030-10758-1}, url={https://doi.org/10.1007/978-3-030-10758-1}, library={PY [Signatur: PY/UG 3100 B612(6)]}, } @book{UBHD-68396046, author={Binder, Kurt and Heermann, Dieter W.}, title={Monte carlo simulation in statistical physics}, subtitle={an introduction}, edition={Sixth edition}, publisher={Springer}, address={Cham}, year={2019}, pages={1 Online-Ressource (XVII, 258 Seiten)}, language={eng}, isbn={978-3-030-10758-1}, series={Graduate texts in physics}, doi={10.1007/978-3-030-10758-1}, url={https://doi.org/10.1007/978-3-030-10758-1}, library={UB}, } @article{UBHD-67440293, author={Bohn, Manfred and Heermann, Dieter W.}, title={Conformational properties of compact polymers}, year={2009}, language={eng}, issn={1089-7690}, volume={130(2009}, number={17) Artikel-Nr. e174901}, note={Gesehen am 29.08.2013}, journal={The journal of chemical physics}, doi={10.1063/1.3126651}, } @incollection{UBHD-67444562, author={Bohn, Manfred and Heermann, Dieter W.}, title={Conformational properties of compact polymers}, year={2009}, pages={?}, language={eng}, note={Gesehen am 12.07.2013}, booktitle={Arxiv}, doi={10.1063/1.3126651}, } @article{UBHD-67435170, author={Bohn, Manfred and Heermann, Dieter W.}, title={Diffusion-driven looping provides a consistent framework for chromatin organization}, year={2010}, language={eng}, issn={1932-6203}, volume={5(2010}, number={8) Artikel-Nr. e12218}, note={Gesehen am 26.06.2013}, journal={PLOS ONE}, doi={10.1371/journal.pone.0012218}, } @article{UBHD-67438798, author={Bohn, Manfred and Kaufmann, Rainer and M{\"u}ller, Patrick and Gunkel, Manuel and Hausmann, Michael and Heermann, Dieter W.}, title={Localization microscopy reveals expression-dependent parameters of chromatin nanostructures}, year={2010}, pages={1358-1367}, language={eng}, issn={1542-0086}, volume={99}, number={5}, note={Gesehen am 02.07.2013}, journal={Biophysical journal}, doi={10.1016/j.bpj.2010.05.043}, } @article{UBHD-67439599, author={Bohn, Manfred and Heermann, Dieter W.}, title={On the influence of topological catenation and bonding constraints on ring polymers}, year={2010}, pages={2564-2573}, language={eng}, issn={1520-5835}, volume={43}, number={5}, note={Gesehen am 03.07.2013}, journal={Macromolecules}, doi={10.1021/ma902623u}, } @incollection{UBHD-67441619, author={Bohn, Manfred and Heermann, Dieter W.}, title={A random loop model for long polymers}, year={2007}, pages={?}, language={eng}, note={Gesehen am 08.07.2013}, booktitle={De.arxiv.org}, } @article{UBHD-67434176, author={Bohn, Manfred and Heermann, Dieter W.}, title={Repulsive forces between looping chromosomes induce entropy-driven segregation}, year={2011}, language={eng}, issn={1932-6203}, volume={6(2011}, number={1) Artikel-Nr. e14428}, note={Gesehen am 26.06.2013}, journal={PLOS ONE}, doi={10.1371/journal.pone.0014428}, } @article{UBHD-67439601, author={Bohn, Manfred and Heermann, Dieter W.}, title={Topological interactions between ring polymers}, subtitle={implications for chromatin loops}, year={2010}, pages={044904-1-044904-10}, language={eng}, issn={1089-7690}, volume={132}, number={4}, note={Gesehen am 29.08.2013}, journal={The journal of chemical physics}, doi={10.1063/1.3302812}, } @incollection{UBHD-67444561, author={Bohn, Manfred and Heermann, Dieter W.}, title={Topological interactions between ring polymers}, subtitle={implications for chromatin loops}, year={2010}, pages={?}, language={eng}, note={Gesehen am 12.07.2013}, booktitle={De.arxiv.org}, doi={10.1063/1.3302812}, } @book{UBHD-68021577, author={Braun, Joachim von and Heermann, Dieter W. and Rausch, Thomas}, title={Bio{\"o}konomie}, subtitle={nachhaltig leben und wirtschaften (17. Marsilius-Vorlesung)}, publisher={Universit{\"a}tsbibliothek Heidelberg}, address={Heidelberg}, year={2016}, pages={1 Online-Ressource (5 Minuten 27 Sekunden, 9 Minuten 50 Sekunden, 54 Minuten 6 Sekunden)}, language={ger}, doi={10.11588/heidok.00021791}, keywords={Bio{\"o}konomie / Nachhaltigkeit}, url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-217910}, library={UB}, } @incollection{UBHD-67443371, author={Brill, Michael and Diesinger, Philipp M. and Heermann, Dieter W.}, title={Knots in macromolecules in constraint space}, year={2005}, pages={?}, language={eng}, note={Gesehen am 10.07.2013}, booktitle={De.arxiv.org}, } @article{UBHD-67470426, author={Burkitt, Anthony N. and Heermann, Dieter W.}, title={Exponential relaxation out of nonequilibrium}, year={1989}, pages={207-211}, language={eng}, issn={1286-4854}, volume={10}, number={3}, note={Gesehen am 07.11.2017}, journal={epl}, doi={10.1209/0295-5075/10/3/004}, } @article{UBHD-68152208, author={Burkitt, Anthony N. and Heermann, Dieter W.}, title={Parallelization of a cluster algorithm}, year={1989}, pages={201-209}, language={eng}, issn={1879-2944}, volume={54}, number={2}, note={Gesehen am 22.08.2017}, journal={Computer physics communications}, doi={10.1016/0010-4655(89)90082-9}, } @article{UBHD-67444038, author={Bustillos, Armando Ticona and Heermann, Dieter W. and Cordeiro, Claudette E.}, title={Reconstruction of the free energy in the metastable region using the path ensemble}, year={2004}, pages={4804-4809}, language={eng}, issn={1089-7690}, volume={121}, number={10}, note={Gesehen am 29.08.2013}, journal={The journal of chemical physics}, doi={10.1063/1.1778372}, } @incollection{UBHD-67444574, author={Bustillos, Armando Ticona and Heermann, Dieter W. and Cordeiro, Claudette E.}, title={Reconstruction of the free energy in the metastable region using the path ensemble}, year={2008}, pages={?}, language={eng}, note={Gesehen am 12.07.2013}, booktitle={Arxiv}, doi={10.1063/1.1778372}, } @article{UBHD-67466629, author={Carmesin, Hans-Otto and Heermann, Dieter W. and Binder, Kurt}, title={Influence of a continuous quenching procedure on the initial stages of spinodal decomposition}, year={1986}, pages={89-102}, language={eng}, issn={1431-584X}, volume={65}, number={1}, note={Gesehen am 03.09.2013}, journal={Zeitschrift f{\"u}r Physik}, doi={10.1007/BF01308403}, } @article{UBHD-67470422, author={Desai, Rashmi C. and Heermann, Dieter W. and Binder, Kurt}, title={Finite-size scaling in a microcanonical ensemble}, year={1988}, pages={795-823}, language={eng}, issn={1572-9613}, volume={53}, number={3/4}, note={Gesehen am 12.09.2013}, journal={Journal of statistical physics}, doi={10.1007/BF01014226}, } @article{UBHD-67441611, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={Average crossing number of Gaussian and equilateral chains with and without excluded volume}, year={2008}, pages={209-214}, language={eng}, issn={1434-6036}, volume={62}, number={2}, note={Gesehen am 08.07.2013}, journal={The European physical journal}, doi={10.1140/epjb/e2008-00145-6}, } @article{UBHD-67440292, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={Depletion effects massively change chromatin properties and influence genome folding}, year={2009}, pages={2146-2153}, language={eng}, issn={1542-0086}, volume={97}, number={8}, note={Gesehen am 04.07.2013}, journal={Biophysical journal}, doi={10.1016/j.bpj.2009.06.057}, } @article{UBHD-67438795, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={Histone depletion facilitates chromatin loops on the kilobasepair scale}, year={2010}, pages={2995-3001}, language={eng}, issn={1542-0086}, volume={99}, number={9}, note={Gesehen am 02.07.2013}, journal={Biophysical journal}, doi={10.1016/j.bpj.2010.08.039}, } @article{UBHD-67439603, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={Hydrophobicity as a possible reason for gelation of FG-rich nucleoporins}, year={2010}, pages={299-306}, language={eng}, issn={1432-1017}, volume={39}, number={2}, note={Gesehen am 03.07.2013}, journal={European biophysics journal}, doi={10.1007/s00249-009-0544-8}, } @incollection{UBHD-67441613, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={The influence of the cylindrical shape of the nucleosomes and H1 defects on properties of chromatin}, year={2007}, pages={?}, language={eng}, note={Gesehen am 08.07.2013}, booktitle={De.arxiv.org}, doi={10.1529/biophysj.107.113902}, } @article{UBHD-67441612, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={The influence of the cylindrical shape of the nucleosomes and H1 defects on properties of chromatin}, year={2008}, pages={4165-4172}, language={eng}, issn={1542-0086}, volume={94}, number={11}, note={Gesehen am 08.07.2013}, journal={Biophysical journal}, doi={10.1529/biophysj.107.113902}, } @book{UBHD-67952147, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={Monte Carlo simulations indicate that Chromati}, subtitle={nanostructure is accessible by light microscopy}, publisher={Springer; BioMed Central}, address={Berlin; Heidelberg; London}, year={2010}, pages={1 Online-Ressource}, language={eng}, note={Aus: PMC Biophysics, 3 (2010), Nr. 11. pp. 1-20. ISSN 1757-5036}, url={http://www.ub.uni-heidelberg.de/archiv/19917}, library={UB}, } @article{UBHD-67438796, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={Monte Carlo simulations indicate that chromatin nanostructure is accessible by light microscopy}, year={2010}, pages={11ff}, language={eng}, issn={1757-5036}, volume={3}, note={Gesehen am 02.07.2013}, journal={PMC Biophysics}, doi={10.1186/1757-5036-3-11}, } @article{UBHD-67443370, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={The two-angle model and the phase diagram of chromatin}, year={2005}, language={eng}, issn={1550-2376}, volume={74(2005}, number={3) Artikel-Nr. e031904}, note={Gesehen am 10.07.2013}, journal={Physical review}, doi={10.1103/PhysRevE.74.031904}, } @incollection{UBHD-67443369, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={The two-angle model and the phase diagram of chromatin}, year={2005}, pages={?}, language={eng}, note={Gesehen am 10.07.2013}, booktitle={Arxiv}, doi={10.1103/PhysRevE.74.031904}, } @article{UBHD-67444573, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={The two-angle model and the phase diagram for chromatin}, year={2006}, language={eng}, issn={1550-2376}, volume={74(2006}, number={3) Artikel-Nr. e031904}, note={Gesehen am 12.07.2013}, journal={Physical review}, doi={10.1103/PhysRevE.74.031904}, } @incollection{UBHD-67444572, author={Diesinger, Philipp M. and Heermann, Dieter W.}, title={The two-angle model and the phase diagram for chromatin}, year={2008}, pages={?}, language={eng}, note={Gesehen am 12.07.2013}, booktitle={Arxiv}, doi={10.1103/PhysRevE.74.031904}, } @incollection{UBHD-67444570, author={Dimitrov, Dimităr I. and Heermann, Dieter W.}, title={Structure of polymer brushes in cylindrical tubes}, subtitle={a molecular dynamics simulation}, year={2006}, pages={?}, language={eng}, note={Gesehen am 12.07.2013}, booktitle={De.arxiv.org}, doi={10.1002/mats.200600029}, } @article{UBHD-67441626, author={Dimitrov, Dimităr I. and Heermann, Dieter W.}, title={Structure of polymer brushes in cylindrical tubes}, subtitle={a molecular dynamics simulation}, year={2006}, pages={573-583}, language={eng}, issn={1521-3919}, volume={15}, number={7}, note={Gesehen am 08.07.2013}, journal={Macromolecular theory and simulations}, doi={10.1002/mats.200600029}, } @article{UBHD-67674149, author={Di Ventura, Barbara and Knecht, Benoît and Rohr, Karl and Heermann, Dieter W. and Sourjik, Victor}, title={Chromosome segregation by the Escherichia coli Min system}, year={2013}, pages={686}, language={eng}, volume={9}, number={1}, note={Gesehen am 15.09.2014}, journal={Biosystems}, doi={10.1038/msb.2013.44}, } @article{UBHD-67470433, author={D'Onorio DeMeo, Marco and Heermann, Dieter W. and Binder, Kurt}, title={Monte Carlo study of the ising model phase transition in terms of the percolation transition of “physical clusters”}, year={1990}, pages={585-618}, language={eng}, issn={1572-9613}, volume={60}, number={5/6}, note={Gesehen am 12.09.2013}, journal={Journal of statistical physics}, doi={10.1007/BF01025984}, } @incollection{UBHD-68151771, author={Feinauer, Christoph J. and Hofmann, Andreas and Liu, Lei and Máté, Gabriell and Heermann, Dieter W.}, title={Zinc finger proteins and the 3D organization of chromosomes}, year={2013}, pages={67-117}, language={eng}, issn={1876-1623}, note={Gesehen am 18.08.2017}, booktitle={Advances in protein chemistry and structural biology}, doi={10.1016/B978-0-12-410523-2.00003-1}, } @article{UBHD-68146055, author={Fischer, Wolfgang and Kalita, Monoj Mon and Heermann, Dieter W.}, title={Viral channel forming proteins}, subtitle={how to assemble and depolarize lipid membranes in silico}, year={2016}, pages={1710-1721}, language={eng}, issn={1879-2642}, volume={1858}, note={Gesehen am 03.08.2017}, journal={Biochimica et biophysica acta}, doi={10.1016/j.bbamem.2016.01.018}, } @article{UBHD-68152207, author={Forrest, Bruce M. and Baumg{\"a}rtner, Artur and Heermann, Dieter W.}, title={Parallel simulation of dense two-dimensional polymer systems}, year={1990}, pages={455-462}, language={eng}, issn={1879-2944}, volume={59}, number={3}, note={Gesehen am 22.08.2017}, journal={Computer physics communications}, doi={10.1016/0010-4655(90)90087-H}, } @article{UBHD-67437066, author={Fritsche, Miriam and Heermann, Dieter W.}, title={Confinement driven spatial organization of semiflexible ring polymers}, subtitle={implications for biopolymer packaging}, year={2012}, pages={6906-6913}, language={eng}, issn={1744-6848}, volume={7}, number={15}, note={Gesehen am 28.06.2013}, journal={Soft matter}, doi={10.1039/c1sm05445g}, } @article{UBHD-67438797, author={Fritsche, Miriam and Heermann, Dieter W.}, title={Conformational and dynamical properties of the isolated, three-dimensional single- and double-tethered polymer chain on an infinite surface}, year={2010}, pages={440-448}, language={eng}, issn={1521-3919}, volume={19}, number={7}, note={Gesehen am 02.07.2013}, journal={Macromolecular theory and simulations}, doi={10.1002/mats.201000025}, } @article{UBHD-67293585, author={Fritsche, Miriam and Heermann, Dieter W.}, title={Conformational temperature-dependent behavior of a histone H2AX}, subtitle={a coarse-grained Monte Carlo approach via knowledge-based interaction potentials}, year={2012}, language={eng}, issn={1932-6203}, volume={7(2012}, number={3) Artikel-Nr. e32075}, note={Gesehen 26.06.2013}, journal={PLOS ONE}, doi={10.1371/journal.pone.0032075}, } @article{UBHD-67293583, author={Fritsche, Miriam and Heermann, Dieter W.}, title={The impact of entropy on the spatial organization of synaptonemal complexes within the cell nucleus}, year={2012}, language={eng}, issn={1932-6203}, volume={7(2012}, number={5) Artikel-Nr. e36282}, note={Gesehen am 26.06.2013}, journal={PLOS ONE}, doi={10.1371/journal.pone.0036282}, } @article{UBHD-67435882, author={Fritsche, Miriam and Li, Songling and Heermann, Dieter W.}, title={A model for Escherichia coli chromosome packaging supports transcription factor-induced DNA domain formation}, year={2012}, pages={972-980}, language={eng}, issn={1362-4962}, volume={40}, number={3}, note={Gesehen 29.08.2013}, journal={Nucleic acids research}, doi={10.1093/nar/gkr779}, } @article{UBHD-67439592, author={Fritsche, Miriam and Heermann, Dieter W.}, title={Temperature-dependent structural behavior of self-avoiding walks on three-dimensional Sierpinski square lattices}, year={2010}, pages={051119-1-051119-5}, language={eng}, issn={1550-2376}, volume={81}, number={5}, note={Gesehen am 03.07.2013}, journal={Physical review}, doi={10.1103/PhysRevE.81.051119}, } @article{UBHD-67435173, author={Fritsche, Miriam and Heermann, Dieter W.}, title={Variation in structure of a protein (H2AX) with knowledge-based interactions}, year={2013}, language={eng}, issn={1932-6203}, volume={8(2013}, number={5) Artikel-Nr. e0064507}, note={Gesehen am 26.06.2013}, journal={PLOS ONE}, doi={10.1371/journal.pone.0064507}, } @incollection{UBHD-67453236, author={Fuhrmann, Thomas and Heermann, Dieter W. and Hefft, Klaus and H{\"u}fner, J{\"o}rg}, title={Entwicklung eines web-basierten interaktiven Physikbaukastens und mathematischen Vorkurses}, year={1999}, pages={157-161}, language={ger}, booktitle={Proceedings of the Workshop on Physics and Computer Science}, } @book{UBHD-67453233, author={Fuhrmann, Thomas and Heermann, Dieter W.}, title={Java teachware}, subtitle={the Java remote control tool and its applications}, publisher={Institut f{\"u}r Theoretische Physik [u.a.]}, address={Heidelberg}, year={2000}, pages={Online-Ressource (9 S.)}, language={eng}, note={Gesehen am 29.08.2013}, } @article{UBHD-68833443, author={Hahn, Hannes and Neitzel, Charlotte and Kopečná, Olga and Heermann, Dieter W. and Falk, Martin and Hausmann, Michael}, title={Topological analysis of γH2AX and MRE11 clusters detected by localization microscopy during X-ray-induced DNA double-strand break repair}, year={2021}, pages={1-21}, language={eng}, issn={2072-6694}, volume={13}, note={Gesehen am 17.12.2021}, journal={Cancers}, doi={10.3390/cancers13215561}, } @article{UBHD-67451428, author={Hapke, Thorsten and P{\"a}tzold, Gerald and Heermann, Dieter W.}, title={Surface tension of amorphous polymer films}, year={1998}, pages={10075-10081}, language={eng}, issn={1089-7690}, volume={109}, number={22}, note={Gesehen am 29.07.2013}, journal={The journal of chemical physics}, doi={10.1063/1.477683}, } @article{UBHD-67451429, author={Hartmann, Alexander K. and Heermann, Dieter W.}, title={Description of noble gas diffusion in a polymer matrix by a hopping model}, year={1998}, pages={9550-9557}, language={eng}, issn={1089-7690}, volume={108}, number={22}, note={Gesehen am 29.07.2013}, journal={The journal of chemical physics}, doi={10.1063/1.476403}, } @article{UBHD-68737737, author={Hausmann, Michael and Falk, Martin and Neitzel, Charlotte and Hofmann, Andreas and Biswas, Abin and Gier, Theresa and Falkova, Iva and Heermann, Dieter W. and Hildenbrand, Georg Lars}, title={Elucidation of the clustered nano-architecture of radiation-induced DNA damage sites and surrounding chromatin in cancer cells}, subtitle={a single molecule localization microscopy approach}, year={2021}, pages={1-25}, language={eng}, issn={1422-0067 and 1661-6596}, volume={22}, note={Gesehen am 16.06.2021}, journal={International journal of molecular sciences}, doi={10.3390/ijms22073636}, } @article{UBHD-68663307, author={Hausmann, Michael and Neitzel, Charlotte and Heermann, Dieter W. and Hildenbrand, Georg Lars}, editor={Pilarczyk, G{\"o}tz}, title={Single molecule localization microscopy analyses of DNA-repair foci and clusters detected along particle damage tracks}, year={2020}, pages={1-15}, language={eng}, issn={2296-424X}, volume={8}, number={Artikel-ID 578662}, note={Gesehen am 19.11.2020}, journal={Frontiers in physics}, doi={10.3389/fphy.2020.578662}, url={https://doi.org/10.3389/fphy.2020.578662}, library={UB}, } @article{UBHD-67467603, author={Hayward, Sean Alan and Heermann, Dieter W. and Binder, Kurt}, title={Dynamic percolation transition induced by phase separation}, subtitle={a Monte Carlo analysis}, year={1987}, pages={1053-1081}, language={eng}, issn={1572-9613}, volume={49}, number={5/6}, note={Gesehen am 05.09.2013}, journal={Journal of statistical physics}, doi={10.1007/BF01017560}, } @article{UBHD-67464347, author={Heermann, Dieter W.}, title={Classical nucleation theory with a tolman correction}, year={1981}, pages={631-640}, language={eng}, issn={1572-9613}, volume={29}, number={3}, note={Gesehen am 28.08.2013}, journal={Journal of statistical physics}, doi={10.1007/BF01342192}, } @conference{UBHD-67484901, author={Heermann, Dieter W.}, title={Computer simulations of first order phase transformations}, subtitle={Part I: Metastability}, year={1986}, pages={?}, language={eng}, isbn={90-277-2192-0 and 978-90-277-2192-1}, } @conference{UBHD-67484902, author={Heermann, Dieter W.}, title={Computer simulations of first order phase transformations}, subtitle={Part II: spinodal decomposition}, year={1986}, pages={?}, language={eng}, isbn={90-277-2192-0 and 978-90-277-2192-1}, } @book{UBHD-59801671, author={Heermann, Dieter W.}, title={Computer simulation methods in theoretical physics}, edition={2. Aufl.}, publisher={Springer}, address={Berlin ; Heidelberg [u.a.]}, year={1990}, pages={XI, 145 S.}, language={eng}, isbn={3-540-52210-7 and 0-387-52210-7 and 978-0-387-52210-4 and 978-3-540-52210-2}, note={Literaturverz. S. 137 - 142}, keywords={Molekulardynamik ; Brownsche Dynamik ; Monte-Carlo-Simulation ; Molekulardynamik ; Brownsche Dynamik ; Monte-Carlo-Simulation}, library={MA [Signatur: Heerm]}, } @book{UBHD-69066716, author={Heermann, Dieter W.}, title={Computer simulation methods in theoretical physics}, edition={2nd ed. 1990.}, publisher={Springer Berlin Heidelberg}, address={Berlin, Heidelberg}, year={1990}, pages={Online-Ressource (XII, 145p. 30 illus)}, language={eng}, isbn={978-3-642-75448-7}, doi={10.1007/978-3-642-75448-7}, keywords={Molekulardynamik ; Brownsche Dynamik ; Monte-Carlo-Simulation ; Molekulardynamik ; Brownsche Dynamik ; Monte-Carlo-Simulation}, } @article{UBHD-67479235, author={Heermann, Dieter W. and Rovere, Marzia}, title={Domain growth, overlap and random numbers}, year={1987}, pages={?}, language={eng}, volume={32}, journal={Proceedings of the ... Scottish Universities Summer School in Physics}, } @article{UBHD-67464899, author={Heermann, Dieter W.}, title={Dynamical spinodal}, subtitle={the transition between nucleation and spinodal decomposition}, year={1984}, pages={309-315}, language={eng}, issn={1431-584X}, volume={55}, number={4}, note={Gesehen am 29.08.2013}, journal={Zeitschrift f{\"u}r Physik}, doi={10.1007/BF01304082}, } @incollection{UBHD-67444560, author={Heermann, Dieter W. and Cordeiro, Claudette E.}, title={Evidence for sharper than expected transition between metastable and unstable states}, year={2002}, pages={?}, language={eng}, note={Gesehen am 12.07.2013}, booktitle={De.arxiv.org}, doi={10.1142/S0129183102004005}, } @article{UBHD-67444558, author={Heermann, Dieter W. and Cordeiro, Claudette E.}, title={Evidence for sharper than expected transition between metastable and unstable states}, year={2002}, pages={1419-1425}, language={eng}, issn={1793-6586}, volume={13}, number={10}, note={Gesehen am 17.07.2013}, journal={International journal of modern physics}, doi={10.1142/S0129183102004005}, } @incollection{UBHD-67484129, author={Heermann, Dieter W. and Binder, Kurt}, title={Formation of ordered structures in quenching experiments}, subtitle={scaling theory and simulations}, year={1987}, pages={42-51}, language={eng}, isbn={978-3-642-73001-6}, booktitle={The physics of structure formation}, doi={10.1007/978-3-642-73001-6_3}, } @article{UBHD-67479231, author={Heermann, Dieter W.}, title={From random percolation to dynamical percolation}, year={1987}, pages={?}, language={eng}, volume={32}, journal={Proceedings of the ... Scottish Universities Summer School in Physics}, } @article{UBHD-68126751, author={Heermann, Dieter W. and Li, Yixue}, title={A global-update simulation method for polymer systems}, year={1993}, pages={299-308}, language={eng}, issn={1521-3919}, volume={2}, number={3}, note={Gesehen am 08.06.2017}, journal={Macromolecular theory and simulations}, doi={10.1002/mats.1993.040020301}, } @article{UBHD-67464345, author={Heermann, Dieter W. and Stauffer, Dietrich}, title={Influence of boundary conditions on square bond percolation near p c}, year={1980}, pages={133-136}, language={eng}, issn={1431-584X}, volume={40}, number={1}, note={Gesehen am 27.08.2013}, journal={Zeitschrift f{\"u}r Physik}, doi={10.1007/BF01295081}, } @article{UBHD-68146314, author={Heermann, Dieter W.}, title={Eine Irrfahrt im Raum?}, subtitle={Das Erbmolek{\"u}l DNS aus der Sicht der Physik}, year={2009}, pages={?}, language={eng}, number={3}, note={Gesehen am 04.08.2017}, journal={Ruperto Carola}, editor={Pfeiffer, Thomas}, } @article{UBHD-67470421, author={Heermann, Dieter W. and Desai, Rashmi C.}, title={Ising model, transputers and dynamical correlations using a microcanonical ensemble}, year={1988}, pages={297-302}, language={eng}, issn={1879-2944}, volume={50}, number={3}, note={Gesehen am 12.09.2013}, journal={Computer physics communications}, doi={10.1016/0010-4655(88)90185-3}, } @conference{UBHD-67484900, author={Heermann, Dieter W.}, title={Metastability and spinodal nucleation}, year={1984}, pages={11-15$5}, language={eng}, isbn={0-08-031651-4 and 978-0-08-031651-2}, } @article{UBHD-67459481, author={Heermann, Dieter W.}, title={Metastability and dynamics}, year={1992}, pages={821-824}, language={eng}, issn={1793-6586}, volume={3}, number={5}, note={Gesehen am 15.08.2013}, journal={International journal of modern physics}, doi={10.1142/S0129183192000506}, } @article{UBHD-67293582, author={Heermann, Dieter W.}, title={Mitotic chromosome structure}, year={2012}, pages={1381-1385}, language={eng}, issn={1090-2422}, volume={318}, number={12}, note={Gesehen am 26.06.2013}, journal={Experimental cell research}, doi={10.1016/j.yexcr.2012.03.027}, } @article{UBHD-67293130, author={Heermann, Dieter W. and Jerabek, Hansj{\"o}rg}, title={A model for the 3D chromatin architecture of pro and eukaryotes}, year={2012}, pages={307-314}, language={eng}, issn={1095-9130}, volume={57}, number={3}, note={Gesehen am 26.06.2013}, journal={Methods}, doi={10.1016/j.ymeth.2012.04.010}, } @article{UBHD-67479237, author={Heermann, Dieter W.}, title={The Monte Carlo method in the study of first order phase transitions}, year={1987}, pages={?}, language={eng}, volume={32}, journal={Proceedings of the ... Scottish Universities Summer School in Physics}, } @article{UBHD-67467131, author={Heermann, Dieter W. and Binder, Kurt and Hayward, Sean Alan}, title={Non-equilibrium percolation}, year={1987}, pages={843-851}, language={eng}, issn={1463-6417}, volume={56}, number={6}, note={Gesehen am 04.09.2013}, journal={Philosophical magazine}, doi={10.1080/13642818708215318}, } @article{UBHD-67464351, author={Heermann, Dieter W. and Klein, William}, title={Nucleation and growth of nonclassical droplets}, year={1983}, pages={1062-1065}, language={eng}, issn={1079-7114}, volume={50}, number={14}, note={Gesehen am 28.8.2013}, journal={Physical review letters}, doi={10.1103/PhysRevLett.50.1062}, } @article{UBHD-67464352, author={Heermann, Dieter W.}, title={Nucleation and metastability in three-dimensional Ising models}, year={1984}, pages={447-470}, language={eng}, issn={1572-9613}, volume={36}, number={3/4}, note={Gesehen am 29.08.2013}, journal={Journal of statistical physics}, doi={10.1007/BF01010991}, } @article{UBHD-67446766, author={Heermann, Dieter W. and Wang, Ting and Lee, Wei-Der}, title={Nucleation and metastability in the CO2-system}, year={2003}, pages={81-94}, language={eng}, issn={1793-6586}, volume={14}, number={1}, note={Gesehen am 17.07.2013}, journal={International journal of modern physics}, } @book{UBHD-69066715, author={Heermann, Dieter W. and Burkitt, Anthony N.}, title={Parallel algorithms in computational science}, publisher={Springer}, address={Berlin ; Heidelberg}, year={1991}, pages={Online-Ressource (XIII, 183p. 46 illus)}, language={eng}, isbn={978-3-642-76265-9}, series={Springer Series in Information Sciences ; 24}, doi={10.1007/978-3-642-76265-9}, keywords={Computersimulation / Paralleler Algorithmus}, } @book{UBHD-3578636, author={Heermann, Dieter W. and Burkitt, Anthony N.}, title={Parallel algorithms in computational science}, publisher={Springer}, address={Berlin ; Heidelberg [u.a.]}, year={1991}, pages={XIII, 183 S.}, language={eng}, isbn={3-540-53418-0 and 0-387-53418-0 and 978-3-540-53418-1 and 978-0-387-53418-3}, number={ARRAY(0x5602ccdcf888)}, series={Springer series in information sciences}, keywords={Computersimulation / Paralleler Algorithmus}, library={UB [Signatur: UBN/ST 134 H459] ; MA [Signatur: Heerm] ; MA [Signatur: Heerm] ; MA [Signatur: Heerm] ; PY [Signatur: PY/ST 130 H459]}, } @incollection{UBHD-67649991, author={Heermann, Dieter W. and Burkitt, Anthony N.}, title={Parallel algorithms for statistical physics problems}, year={1995}, pages={53-74}, language={eng}, isbn={3-540-60174-0 and 978-3-540-60174-6}, booktitle={The Monte Carlo method in condensed matter physics}, editor={Binder, Kurt}, } @conference{UBHD-68154847, author={Heermann, Dieter W. and Burkitt, Anthony N.}, title={Parallel computing}, year={1990}, pages={71-84}, language={eng}, } @conference{UBHD-68154410, author={Heermann, Dieter W. and Burkitt, Anthony N.}, title={Parallelization of computational physics algorithms}, year={1990}, pages={16-25}, language={eng}, isbn={3-540-51906-8 and 0-387-51906-8 and 978-0-387-51906-7 and 978-3-540-51906-5}, } @article{UBHD-67470425, author={Heermann, Dieter W. and Burkitt, Anthony N.}, title={Parallelization of the Ising model and its performance evaluation}, year={1990}, pages={345-357}, language={eng}, issn={1872-7336}, volume={13}, number={3}, note={Gesehen am 12.09.2013}, journal={Parallel computing}, doi={10.1016/0167-8191(90)90137-X}, } @article{UBHD-67469807, author={Heermann, Dieter W.}, title={Parallel processing of statistical mechanical Models}, year={1988}, pages={?}, language={eng}, volume={2}, note={Gesehen am 11.09.2013}, journal={Speedup}, } @article{UBHD-67479230, author={Heermann, Dieter W. and Paul, Wolfgang and Schmittmann, Beate}, title={Pathwise approach to non-equilibrium}, year={1987}, pages={?}, language={eng}, volume={32}, journal={Proceedings of the ... Scottish Universities Summer School in Physics}, } @article{UBHD-67464350, author={Heermann, Dieter W. and Klein, William}, title={Percolation and droplets in a medium-range three-dimensional Ising model}, year={1983}, pages={1732-1735}, language={eng}, issn={1550-235X}, volume={27}, number={3}, note={Gesehen am 29.8.2013}, journal={Physical review}, doi={10.1103/PhysRevB.27.1732}, } @incollection{UBHD-67441623, author={Heermann, Dieter W. and Bohn, Manfred}, title={Percolation in a class of band structured random matrices}, year={2007}, pages={?}, language={eng}, note={Gesehen am 08.07.2013}, booktitle={De.arxiv.org}, } @article{UBHD-67464346, author={Heermann, Dieter W. and Stauffer, Dietrich}, title={Phase diagram for three-dimensional correlated site-bond percolation}, year={1981}, pages={339-344}, language={eng}, issn={1431-584X}, volume={44}, number={4}, note={Gesehen am 27.08.2013}, journal={Zeitschrift f{\"u}r Physik}, doi={10.1007/BF01294172}, } @article{UBHD-67469806, author={Heermann, Dieter W.}, title={Phase separation and percolation}, year={1987}, pages={193-201}, language={eng}, issn={1662-9779}, number={3/4}, note={Gesehen am 11.09.2013}, journal={Solid state phenomena}, doi={10.4028/www.scientific.net/SSP.3-4.193}, } @article{UBHD-67437068, author={Heermann, Dieter W.}, title={Physical nuclear organization}, subtitle={loops and entropy}, year={2011}, pages={332-337}, language={eng}, issn={1879-0410}, volume={23}, number={3}, note={Gesehen am 28.06.2013}, journal={Current opinion in cell biology}, doi={10.1016/j.ceb.2011.03.010}, } @incollection{UBHD-67446901, author={Heermann, Dieter W. and Bohn, Manfred and Diesinger, Philipp M.}, title={The relation between the gene network and the physical structure of chromosomes}, year={2012}, pages={153-167}, language={eng}, isbn={978-3-642-25707-0}, booktitle={Modeling, simulation and optimization of complex processes}, doi={10.1007/978-3-642-25707-0_13}, } @article{UBHD-67466624, author={Heermann, Dieter W.}, title={Scaling and mean-field-like behaviour in phase separation processes}, year={1985}, pages={311-323}, language={eng}, issn={1431-584X}, volume={61}, number={3}, note={Gesehen am 03.09.2013}, journal={Zeitschrift f{\"u}r Physik}, doi={10.1007/BF01317798}, } @article{UBHD-67454225, author={Heermann, Dieter W. and Li, Yixue and Binder, Kurt}, title={Scaling solutions and finite-size effects in the Liftshitz-Slyozov theory}, year={1996}, pages={132-148}, language={eng}, issn={1873-2119}, volume={230}, number={1/2}, note={Gesehen am 05.08.2013}, journal={Physica}, doi={10.1016/0378-4371(96)00110-0}, } @article{UBHD-67479236, author={Heermann, Dieter W.}, title={Self-averaging properties of quantities in the study of first order transitions}, year={1987}, pages={?}, language={eng}, volume={32}, journal={Proceedings of the ... Scottish Universities Summer School in Physics}, } @article{UBHD-68152628, author={Heermann, Dieter W.}, title={The size of a random surface}, year={1991}, pages={613-621}, language={eng}, issn={1793-6586}, volume={02}, number={02}, note={Gesehen am 24.08.2017}, journal={International journal of modern physics}, doi={10.1142/S0129183191000913}, } @article{UBHD-68154841, author={Heermann, Dieter W. and Klein, William and Stauffer, Dietrich}, title={Spinodals in a long-range interaction system}, year={1982}, pages={1262-1264}, language={eng}, issn={1079-7114}, volume={49}, number={17}, note={Gesehen am 28.8.2017}, journal={Physical review letters}, } @article{UBHD-67459485, author={Heermann, Dieter W. and Burkitt, Anthony N.}, title={System size dependence of the autocorrelation time for the Swendsen-Wang Ising model}, year={1990}, pages={210-214}, language={eng}, issn={1873-2119}, volume={162}, number={2}, note={Gesehen am 15.08.2013}, journal={Physica}, doi={10.1016/0378-4371(90)90439-Y}, } @article{UBHD-67447448, author={Heermann, Dieter W. and Fuhrmann, Thomas}, title={Teaching physics in the virtual university}, subtitle={the mechanics toolkit}, year={2002}, pages={11-15}, language={eng}, issn={1879-2944}, volume={127}, number={1}, note={Gesehen am 29.08.2013}, journal={Computer physics communications}, doi={10.1016/S0010-4655(00)00033-3}, } @article{UBHD-67446765, author={Heermann, Dieter W.}, title={Teaching science using a mobile phone}, year={2002}, pages={1393-1398}, language={eng}, issn={1793-6586}, volume={13}, number={10}, note={Gesehen am 17.07.2013}, journal={International journal of modern physics}, doi={10.1142/S0129183102003991}, } @article{UBHD-67464898, author={Heermann, Dieter W.}, title={Test of the validity of the classical theory of spinodal decomposition}, year={1984}, pages={1126-1128}, language={eng}, issn={1079-7114}, volume={52}, number={13}, note={Gesehen am 28.8.2013}, journal={Physical review letters}, doi={10.1103/PhysRevLett.52.1126}, } @book{UBHD-67453244, author={Heermann, Dieter W. and Linke, Andreas and M{\"u}nkel, Christian}, title={A tool for materials exploration}, publisher={Institut f{\"u}r Theoretische Physik [u.a.]}, address={Heidelberg}, year={1996}, pages={Online-Ressource (9 S.)}, language={eng}, note={Gesehen am 01.08.2013}, } @incollection{UBHD-67469805, author={Heermann, Dieter W.}, title={Transient reversible growth and percolation during phase separation}, year={1987}, pages={159-165}, language={eng}, isbn={978-1-4613-1019-8}, note={Gesehen am 11.09.2013}, booktitle={Dynamics of Ordering Processes in Condensed Matter}, doi={10.1007/978-1-4613-1019-8_22}, } @article{UBHD-67437851, author={Hellmann, Marcel and Heermann, Dieter W. and Weiß, Matthias}, title={Anomalous reaction kinetics and domain formation on crowded membranes}, year={2011}, pages={1-5}, language={eng}, issn={1286-4854}, volume={94}, note={Gesehen am 30.09.2022}, journal={epl}, doi={10.1209/0295-5075/94/18002}, } @article{UBHD-67437067, author={Hellmann, Marcel and Heermann, Dieter W.}, title={Challenges in determining anomalous diffusion in crowded fluids}, year={2011}, pages={7 S.}, language={eng}, issn={1361-648X}, volume={23(2011}, note={Gesehen am 28.06.2013}, journal={Journal of physics}, doi={10.1088/0953-8984/23/23/234113}, } @article{UBHD-67293584, author={Hellmann, Marcel and Heermann, Dieter W. and Weiß, Matthias}, title={Enhancing phosphorylation cascades by anomalous diffusion}, year={2012}, pages={1-5}, language={eng}, issn={1286-4854}, volume={97}, note={Gesehen am 30.09.2022}, journal={epl}, doi={10.1209/0295-5075/97/58004}, } @incollection{UBHD-67444563, author={Hellmann, Marcel and Deng, Youjin and Weiß, Matthias and Heermann, Dieter W.}, title={A modified Potts model for the interaction of surface-attached polymer complexes}, year={2008}, pages={1-5}, language={eng}, note={Gesehen am 30.09.2022}, booktitle={De.arxiv.org}, } @article{UBHD-67441620, author={Hellmann, Marcel and Weiß, Matthias and Heermann, Dieter W.}, title={Monte Carlo simulations reveal the straightening of an end-grafted flexible chain with a rigid side chain}, year={2007}, pages={021802-1-021802-5}, language={eng}, issn={1550-2376}, volume={76}, note={Gesehen am 30.09.2022}, journal={Physical review}, doi={10.1103/PhysRevE.76.021802}, } @incollection{UBHD-67444566, author={Hellmann, Marcel and Weiß, Matthias and Heermann, Dieter W.}, title={Monte Carlo simulations reveal the straightening of an end-grafted flexible chain with a rigid side chain}, year={2007}, pages={1-5}, language={eng}, note={Gesehen am 30.09.2022}, booktitle={De.arxiv.org}, } @article{UBHD-67440294, author={Hellmann, Marcel and Heermann, Dieter W.}, title={Phase transition of a two-dimensional, multiplicatively coupled XY–Potts model}, year={2009}, pages={10 S.}, language={eng}, issn={1751-8121}, volume={42(2009}, number={22) Artikel-Nr. e225001}, note={Gesehen am 29.08.2013}, journal={Journal of physics}, doi={10.1088/1751-8113/42/22/225001}, } @book{UBHD-68458820, author={Hofmann, Andreas and M{\"u}ggenburg, Jan and Heermann, Dieter W.}, title={Bekvaem}, subtitle={integrative data exploration of genomic data}, publisher={Universit{\"a}t}, address={Heidelberg}, year={2019}, pages={1 Online-Ressource (7 Files)}, language={eng}, note={Gesehen am 21.11.2019}, doi={10.11588/data/KGYOS6}, url={https://doi.org/10.11588/data/KGYOS6}, library={UB}, } @article{UBHD-68458829, author={Hofmann, Andreas and M{\"u}ggenburg, Jan and Crémazy, Frédéric and Heermann, Dieter W.}, title={Bekvaem}, subtitle={integrative data explorer for Hi-C data}, year={2019}, pages={1-4}, language={eng}, issn={2530-1381}, volume={2}, number={11}, note={Gesehen am 21.11.2019 ; Mit einer Zusammenfassung in englischer und russischer Sprache}, journal={Journal of bioinformatics and genomics}, doi={10.18454/jbg.2019.2.11.1}, } @incollection{UBHD-68339579, author={Hofmann, Andreas and Heermann, Dieter W.}, title={Deciphering 3D organization of chromosomes using Hi-C data}, year={2018}, pages={389-401}, language={eng}, isbn={978-1-4939-8675-0}, note={Gesehen am 04.12.2020}, booktitle={Bacterial chromatin}, editor={Dame, Remus}, doi={10.1007/978-1-4939-8675-0_19}, } @incollection{UBHD-68145541, author={Hofmann, Andreas and Heermann, Dieter W.}, title={Domain boundary detection in Hi-C maps}, subtitle={a probabilistic graphical model approach}, year={2017}, pages={10 S.}, language={eng}, note={Identifizierung der Ressource nach: Last revised 20 Sep 2019 ; Gesehen am 03.12.2020}, booktitle={De.arxiv.org}, } @incollection{UBHD-68339577, author={Hofmann, Andreas and Heermann, Dieter W.}, title={Processing and analysis of Hi-C data on bacteria}, year={2018}, pages={19-31}, language={eng}, isbn={978-1-4939-8675-0}, note={Gesehen am 04.12.2020}, booktitle={Bacterial chromatin}, editor={Dame, Remus}, doi={10.1007/978-1-4939-8675-0_2}, } @article{UBHD-67941416, author={Hofmann, Andreas and Heermann, Dieter W.}, title={The role of loops on the order of eukaryotes and prokaryotes}, year={2015}, pages={2958-2965}, language={eng}, issn={1873-3468}, volume={589}, number={20}, note={Gesehen am 03.08.2017}, journal={FEBS letters}, doi={10.1016/j.febslet.2015.04.021}, } @incollection{UBHD-68339574, author={Hofmann, Andreas and Heermann, Dieter W.}, title={Self-organised segregation of bacterial chromosomal origins}, year={2018}, pages={1-27}, language={eng}, note={Gesehen am 26.10.2022}, booktitle={bioRxiv beta}, doi={10.1101/304600}, } @article{UBHD-68339576, author={Hofmann, Andreas and Krufczik, Matthias and Heermann, Dieter W. and Hausmann, Michael}, title={Using persistent homology as a new approach for super-resolution localization microscopy data analysis and classification of γH2AX foci/clusters}, year={2018}, pages={18 S.}, language={eng}, issn={1422-0067 and 1661-6596}, volume={19(2018}, note={Im Titel wird gamma als griechischer Buchstabe dargestellt ; Gesehen am 04.12.2020}, journal={International journal of molecular sciences}, doi={10.3390/ijms19082263}, } @book{UBHD-67687908, author={Jerabek, Hansj{\"o}rg and Tark-Dame, Mariliis and Heermann, Dieter W.}, title={Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction [dataset]}, publisher={Universit{\"a}t}, address={Heidelberg}, year={2014}, pages={1 Online-Ressource (8 Files)}, language={eng}, note={Gesehen am 16.10.2014}, doi={10.11588/data/10028}, url={http://dx.doi.org/10.11588/data/10028}, library={UB}, } @article{UBHD-68151767, author={Jerabek, Hansj{\"o}rg and Heermann, Dieter W.}, title={Expression-dependent folding of interphase chromatin}, year={2012}, language={eng}, issn={1932-6203}, volume={7(2012}, note={Gesehen am 18.08.2017}, journal={PLOS ONE}, doi={10.1371/journal.pone.0037525}, } @article{UBHD-68151765, author={Jerabek, Hansj{\"o}rg and Heermann, Dieter W.}, title={How chromatin looping and nuclear envelope attachment affect genome organization in eukaryotic cell nuclei}, year={2014}, pages={351-381}, language={eng}, issn={1937-6448}, volume={307}, note={Gesehen am 18.08.2017}, journal={International review of cell and molecular biology}, doi={10.1016/B978-0-12-800046-5.00010-2}, } @incollection{UBHD-68970394, author={Jia, Jiying and Heermann, Dieter W.}, title={Fractality and topology of self-avoiding walks}, year={2020}, pages={1-22}, language={eng}, note={Gesehen am 09.01.2024}, booktitle={De.arxiv.org}, doi={10.48550/arXiv.2010.15416}, } @article{UBHD-68494008, author={Jia, Jiying and Li, Kunhe and Hofmann, Andreas and Heermann, Dieter W.}, title={The effect of bending rigidity on polymers}, year={2019}, pages={1800071}, language={eng}, issn={1521-3919}, volume={28}, number={3}, note={Gesehen am 27.02.2020}, journal={Macromolecular theory and simulations}, doi={10.1002/mats.201800071}, } @article{UBHD-67439595, author={Kapahnke, Felix and Schmidt, Ulrich and Heermann, Dieter W.}, title={Polymer translocation through a nanopore - the effect of solvent conditions}, year={2010}, pages={164904-1-164904-6}, language={eng}, issn={1089-7690}, volume={132}, number={16}, note={Gesehen am 29.08.2013}, journal={The journal of chemical physics}, doi={10.1063/1.3400650}, } @article{UBHD-67447436, author={Langowski, J{\"o}rg and Heermann, Dieter W.}, title={Computational modelling of the chromatin fiber}, year={2007}, pages={659-667}, language={eng}, issn={1096-3634}, volume={18}, number={5}, note={Gesehen am 29.08.2013}, journal={Seminars in cell & developmental biology}, doi={10.1016/j.semcdb.2007.08.011}, } @article{UBHD-68917699, author={Li, Kunhe and Oiwa, Nestor Norio and Mishra, Sujeet Kumar and Heermann, Dieter W.}, title={Inter-nucleosomal potentials from nucleosomal positioning data}, year={2022}, pages={1-8}, language={eng}, issn={1292-895X}, volume={45}, number={Artikel-ID 33}, note={Gesehen am 12.05.2022}, journal={The European physical journal}, doi={10.1140/epje/s10189-022-00185-3}, url={https://doi.org/10.1140/epje/s10189-022-00185-3}, library={UB ; UB}, } @book{UBHD-68901130, author={Li, Kunhe and Oiwa, Nestor Norio and Mishra, Sujeet Kumar and Heermann, Dieter W.}, title={Inter-nucleosomal potentials from nucleosomal positioning data [research data]"}, publisher={Universit{\"a}t}, address={Heidelberg}, year={2022}, pages={1 Online-Ressource (3 Files)}, language={eng}, note={Gesehen am 30.03.2022}, doi={10.11588/data/H3KPEU}, url={https://doi.org/10.11588/data/H3KPEU}, library={UB}, } @incollection{UBHD-68901133, author={Li, Kunhe and Oiwa, Nestor Norio and Mishra, Sujeet Kumar and Heermann, Dieter W.}, title={Intra-chromosomal potentials from nucleosomal positioning data}, year={2021}, pages={1-14}, language={eng}, note={Gesehen am 30.03.2022}, booktitle={De.arxiv.org}, } @book{UBHD-68892101, author={Li, Kunhe and Oiwa, Nestor Norio and Cordeiro, Claudette E. and Heermann, Dieter W.}, title={Prediction and comparative analysis of CTCF binding sites based on a first principle approach [research data]}, publisher={Universit{\"a}t}, address={Heidelberg}, year={2022}, pages={1 Online-Ressource (1 File)}, language={eng}, note={Gesehen am 07.03.2022}, doi={10.11588/data/RDISCE}, url={https://doi.org/10.11588/data/RDISCE}, library={UB}, } @article{UBHD-67454859, author={Linke, Andreas and Heermann, Dieter W.}, title={Large-scale simulation of the two-dimensional kinetic Ising model}, year={1995}, pages={205-209}, language={eng}, issn={1873-2119}, volume={222}, number={1/4}, note={Gesehen am 06.08.2013}, journal={Physica}, doi={10.1016/0378-4371(95)00343-6}, } @article{UBHD-68153081, author={Lironis, G. and Heermann, Dieter W. and Binder, Kurt}, title={Finite-size scaling study of non-equilibrium percolation}, subtitle={letter to the editor}, year={1990}, pages={L329-L334}, language={eng}, issn={1751-8121}, volume={23}, number={7}, note={Gesehen am 23.08.2017}, journal={Journal of physics}, doi={10.1088/0305-4470/23/7/008}, } @article{UBHD-67446891, author={Li, Songling and Heermann, Dieter W.}, title={Transcriptional regulatory network shapes the genome structure of Saccharomyces cerevisiae}, year={2013}, pages={216-228}, language={eng}, issn={1949-1042}, volume={4}, number={3}, note={Gesehen 17.07.2013}, journal={Nucleus}, doi={10.4161/nucl.24875}, } @article{UBHD-67435876, author={Li, Songling and Heermann, Dieter W.}, title={Using chimaeric expression sequence tag as the reference to identify three-dimensional chromosome contacts}, year={2013}, pages={45-53}, language={eng}, issn={1756-1663}, volume={20}, number={1}, note={Gesehen 29.08.2013}, journal={DNA research}, doi={10.1093/dnares/dss032}, } @article{UBHD-67786196, author={Liu, Lei and Heermann, Dieter W.}, title={The interaction of DNA with multi-Cys2His2 zinc finger proteins}, year={2015}, language={eng}, issn={1361-648X}, volume={27(2015}, note={Gesehen am 10.03.2015}, journal={Journal of physics}, doi={10.1088/0953-8984/27/6/064107}, } @article{UBHD-68150717, author={Liu, Lei and Schubert, David and Chu, Min and Heermann, Dieter W.}, title={Phase transition and winding properties of a flexible polymer adsorbed to a rigid perioidic copolymer}, year={2015}, language={eng}, issn={1550-2376}, volume={91(2015}, note={Gesehen am 19.09.2017}, journal={Physical review}, doi={10.1103/PhysRevE.91.032601}, } @article{UBHD-68150304, author={Liu, Lei and Wade, Rebecca C. and Heermann, Dieter W.}, title={A multiscale approach to simulating the conformational properties of unbound multi-C 2 H 2 zinc finger proteins}, year={2015}, pages={1604-1615}, language={eng}, issn={1097-0134}, volume={83}, number={9}, note={Die Ziffer "2" im Titel ist tiefgestellt ; Gesehen am 17.08.2017}, journal={Proteins}, doi={10.1002/prot.24845}, } @article{UBHD-67459486, author={Manna, Subhrangshu Sekhar and Stauffer, Dietrich and Heermann, Dieter W.}, title={Simulation of three-dimensional bootstrap percolation}, year={1990}, pages={20-26}, language={eng}, issn={1873-2119}, volume={162}, number={1}, note={Gesehen am 15.08.2013}, journal={Physica}, doi={10.1016/0378-4371(89)90553-0}, } @article{UBHD-68150307, author={Máté, Gabriell and Heermann, Dieter W.}, title={A generalized Potts model for confocal microscopy images}, year={2015}, pages={14 S.}, language={eng}, issn={1793-6578}, volume={29(2015}, note={Gesehen am 16.08.2017}, journal={International journal of modern physics}, doi={10.1142/S0217979215500484}, } @article{UBHD-67673510, author={Máté, Gabriell and Heermann, Dieter W.}, title={Persistence intervals of fractals}, year={2014}, pages={252-259}, language={eng}, issn={1873-2119}, volume={405}, number={2}, note={Gesehen am 12.09.2014}, journal={Physica}, doi={10.1016/j.physa.2014.03.037}, } @article{UBHD-67673509, author={Máté, Gabriell and Heermann, Dieter W.}, title={Statistical analysis of protein ensembles}, year={2014}, pages={00020}, language={eng}, issn={2095-0470}, volume={9}, number={2}, note={Gesehen am 12.09.2014}, journal={Frontiers of physics}, doi={10.3389/fphy.2014.00020}, url={http://journal.frontiersin.org/Journal/10.3389/fphy.2014.00020/full}, library={UB}, } @article{UBHD-67673511, author={Máté, Gabriell and Heermann, Dieter W.}, title={A topological similarity measure for proteins}, year={2014}, pages={1180-1190}, language={eng}, issn={1879-2642}, volume={1838}, number={4}, note={Gesehen am 12.09.2014}, journal={Biochimica et biophysica acta}, doi={10.1016/j.bbamem.2013.08.019}, } @article{UBHD-67441609, author={Mateos-Langerak, Julio and Bohn, Manfred and Heermann, Dieter W.}, title={Spatially confined folding of chromatin in the interphase nucleus}, year={2009}, pages={3812-3817}, language={eng}, issn={1091-6490}, volume={106}, number={10}, note={Gesehen am 08.07.2013}, journal={Proceedings of the National Academy of Sciences of the United States of America}, doi={10.1073/pnas.0809501106}, } @article{UBHD-67460086, author={Mehlig, Bernhard and Ferreira, António Luis and Heermann, Dieter W.}, title={Critcal dynamics of the hybrid Monte Carlo algorithm}, year={1992}, pages={151-154}, language={eng}, issn={1873-2445}, volume={291}, number={1/2}, note={Gesehen am 16.08.2013}, journal={Physics letters}, doi={10.1016/0370-2693(92)90135-Q}, } @article{UBHD-67460088, author={Mehlig, Bernhard and Heermann, Dieter W. and Forrest, Bruce M.}, title={Exact Langevin algorithms}, year={1992}, pages={1347-1357}, language={eng}, issn={1362-3028}, volume={76}, number={6}, note={Gesehen am 16.08.2013}, journal={Molecular physics}, doi={10.1080/00268979200102131}, } @article{UBHD-68152185, author={Mehlig, Bernhard and Heermann, Dieter W. and Forrest, Bruce M.}, title={Hybrid Monte Carlo method for condensed-matter systems}, year={1992}, pages={679-685}, language={eng}, issn={1550-235X}, volume={45}, number={2}, note={Gesehen am 22.08.2017}, journal={Physical review}, doi={10.1103/PhysRevB.45.679}, } @article{UBHD-67466626, author={Milchev, Andrey and Heermann, Dieter W. and Binder, Kurt}, title={Finite Size Scaling Analysis of the $phi^4$ Field Theory off the Square Lattice}, year={1986}, pages={749-784}, language={eng}, issn={1572-9613}, volume={44}, number={5/6}, note={Gesehen am 03.09.2013}, journal={Journal of statistical physics}, doi={10.1007/BF01011906}, } @article{UBHD-67466628, author={Milchev, Andrey and Binder, Kurt and Heermann, Dieter W.}, title={Fluctuations and lack of self-averaging in the kinetics of domain growth}, year={1986}, pages={521-535}, language={eng}, issn={1431-584X}, volume={63}, number={4}, note={Gesehen am 03.09.2013}, journal={Zeitschrift f{\"u}r Physik}, doi={10.1007/BF01726202}, } @article{UBHD-67469808, author={Milchev, Andrey and Heermann, Dieter W. and Binder, Kurt}, title={Monte-Carlo simulation of the Cahn-Hillard model of spinodal decomposition}, year={1988}, pages={377-383}, language={eng}, volume={36}, number={2}, note={Gesehen am 11.09.2013}, journal={Acta metallurgica}, doi={10.1016/0001-6160(88)90013-2}, } @article{UBHD-69251888, author={Mishra, Sujeet Kumar and Sangeeta, Sangeeta and Heermann, Dieter W. and Bhattacherjee, Arnab}, title={The role of nucleotide opening dynamics in facilitated target search by DNA-repair proteins}, year={2024}, pages={1-8}, language={eng}, issn={1876-4320}, volume={1867}, note={Gesehen am 09.09.2024}, journal={Biochimica et biophysica acta}, doi={10.1016/j.bbagrm.2024.195026}, } @article{UBHD-68933935, author={Mishra, Sujeet Kumar and Li, Kunhe and Brauburger, Simon and Bhattacherjee, Arnab and Oiwa, Nestor Norio and Heermann, Dieter W.}, title={Superstructure detection in nucleosome distribution shows common pattern within a chromosome and within the genome}, year={2022}, pages={1-11}, language={eng}, issn={2075-1729}, volume={12}, note={This article belongs to the Special issue Epigenetics and Nuclear Architecture ; Gesehen am 23.06.2022}, journal={Life}, doi={10.3390/life12040541}, } @article{UBHD-67454866, author={M{\"u}nkel, Christian and Heermann, Dieter W.}, title={The crumpling transition of dynamically triangulated random surfaces}, year={1993}, pages={1359-1370}, language={eng}, issn={1286-4862}, volume={3}, number={6}, note={Gesehen am 06.08.2013}, journal={Journal de physique}, doi={10.1051/jp1:1993184}, } @article{UBHD-67459482, author={M{\"u}nkel, Christian and Heermann, Dieter W.}, title={The dynamical critical exponent of the two-, three- and five-dimensional kinetic Ising model}, year={1993}, pages={540-552}, language={eng}, issn={1873-2119}, volume={193}, number={3/4}, note={Gesehen am 15.08.2013}, journal={Physica}, doi={10.1016/0378-4371(93)90490-U}, } @article{UBHD-67460089, author={M{\"u}nkel, Christian and Heermann, Dieter W.}, title={Fractal dimensions of dynamically triangulated random surfaces}, year={1992}, pages={2181-2190}, language={eng}, issn={1286-4862}, volume={2}, number={12}, note={Gesehen am 16.08.2013}, journal={Journal de physique}, doi={10.1051/jp1:1992275}, } @article{UBHD-67455666, author={M{\"u}nkel, Christian and Heermann, Dieter W.}, title={Structural properties of two-dimensional polymers}, year={1993}, pages={12-18}, language={eng}, issn={1873-2119}, volume={199}, number={1}, note={Gesehen am 07.08.2013}, journal={Physica}, doi={10.1016/0378-4371(93)90092-I}, } @article{UBHD-67460087, author={M{\"u}nkel, Christian and Heermann, Dieter W.}, title={Visualization of polymer systems}, year={1992}, pages={175-181}, language={eng}, issn={1099-1778}, volume={3}, number={3}, note={Gesehen am 16.08.2013}, journal={The journal of visualization & computer animation}, doi={10.1002/vis.4340030304}, } @article{UBHD-67459483, author={Nielaba, Peter and Heermann, Dieter W.}, title={Dynamical block analysis in a non-equilibrium system}, year={1991}, pages={471-487}, language={eng}, issn={1873-2119}, volume={170}, number={3}, note={Gesehen am 15.08.2013}, journal={Physica}, doi={10.1016/0378-4371(91)90002-T}, } @article{UBHD-67439604, author={Odenheimer, Jens and Heermann, Dieter W. and Kreth, Gregor}, title={Brownian dynamics simulations reveal regulatory properties of higher order chromatin structures}, year={2010}, pages={749-756}, language={eng}, issn={1432-1017}, volume={38}, number={6}, note={Gesehen am 03.07.2013}, journal={European biophysics journal}, doi={10.1007/s00249-009-0486-1}, } @article{UBHD-67443373, author={Odenheimer, Jens and Kreth, Gregor and Heermann, Dieter W.}, title={Dynamic simulation of active/inactive chromatin domains}, year={2005}, pages={351-363}, language={eng}, issn={1573-0689}, volume={31}, number={3/4}, note={Gesehen am 10.07.2013}, journal={Journal of biological physics}, doi={10.1007/s10867-005-7286-3}, } @article{UBHD-67443367, author={Odenheimer, Jens and Heermann, Dieter W. and Brill, Michael}, title={Forces by and on a polymer grafted to a repulsive wall}, year={2005}, pages={1561-1575}, language={eng}, issn={1793-6586}, volume={16}, number={10}, note={Gesehen am 10.07.2013}, journal={International journal of modern physics}, doi={10.1142/S0129183105008151}, } @article{UBHD-68145558, author={Oiwa, Nestor Norio and Cordeiro, Claudette E. and Heermann, Dieter W.}, title={The electronic behavior of zinc-finger protein binding sites in the context of the DNA extended ladder model}, year={2016}, pages={1-10}, language={eng}, issn={2296-424X}, volume={4}, number={Artikel-ID 13}, note={Gesehen am 02.08.2017}, journal={Frontiers in physics}, doi={10.3389/fphy.2016.00013}, } @incollection{UBHD-68145553, author={Oiwa, Nestor Norio and Cordeiro, Claudette E. and Heermann, Dieter W.}, title={The electronic behavior of zinc-finger protein binding sites in the context of the DNA extended ladder model}, year={2015}, pages={1-25}, language={eng}, note={Gesehen am 02.08.2017}, booktitle={De.arxiv.org}, } @incollection{UBHD-68892104, author={Oiwa, Nestor Norio and Li, Kunhe and Cordeiro, Claudette E. and Heermann, Dieter W.}, title={Prediction and comparative analysis of CTCF binding sites based on a first principle approach}, year={2021}, pages={23 S.}, language={eng}, note={Gesehen am 07.03.2022}, booktitle={De.arxiv.org}, } @article{UBHD-67454219, author={Ozawa, Satoru and Sasajima, Yasushi and Heermann, Dieter W.}, title={Monte Carlo simulations of film growth}, year={1996}, pages={172-183}, language={eng}, issn={1879-2731}, volume={272}, number={2}, note={Gesehen am 05.08.2013}, journal={Thin solid films}, doi={10.1016/0040-6090(95)06944-5}, } @article{UBHD-67451430, author={P{\"a}tzold, Gerald and Linke, Andreas and Hapke, Thorsten and Heermann, Dieter W.}, title={Computer simulation of nanoindentation into polymer films}, year={1997}, pages={513-521}, language={eng}, issn={1431-584X}, volume={104}, number={3}, note={Gesehen am 06.03.2014}, journal={Zeitschrift f{\"u}r Physik}, } @book{UBHD-67547409, author={P{\"a}tzold, Gerald and Linke, Andreas and Hapke, Thorsten and Heermann, Dieter W.}, title={Computer simulation of nanoindentation into polymer films}, publisher={Institut f{\"u}r Theoretische Physik}, address={Heidelberg}, year={1997}, pages={18 S.}, language={eng}, note={Gesehen am 08.06.2017}, } @book{UBHD-67453245, author={P{\"a}tzold, Gerald and Hapke, Thorsten and Linke, Andreas and Heermann, Dieter W.}, title={Deformation of polymer films by bending forces}, publisher={Institut f{\"u}r Theoretische Physik}, address={Heidelberg}, year={1996}, pages={Online-Ressource (15 S.)}, language={eng}, note={Gesehen am 14.02.2014}, } @incollection{UBHD-67444577, author={P{\"a}tzold, Gerald and Hapke, Thorsten and Linke, Andreas and Heermann, Dieter W.}, title={Deformation of polymer films by bending forces}, year={1996}, pages={?}, language={eng}, note={Gesehen am 01.08.2013}, booktitle={De.arxiv.org}, doi={10.1142/S0129183102004005}, } @article{UBHD-68972164, author={Pandey, Satyaprakash and Hajikazemi, Mona and Zacheja, Theresa and Schalbetter, Stephanie and Neale, Matthew J. and Baxter, Jonathan and Guryev, Victor and Hofmann, Andreas and Heermann, Dieter W. and Juranek, Stefan A. and Paeschke, Katrin}, title={Author correction to: Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage}, year={2022}, pages={1}, language={eng}, issn={1741-7007}, volume={20}, number={Artikel-ID 29}, note={Gesehen am 11.10.2022}, journal={BMC biology}, doi={10.1186/s12915-022-01237-y}, } @article{UBHD-68972155, author={Pandey, Satyaprakash and Hajikazemi, Mona and Zacheja, Theresa and Schalbetter, Stephanie and Neale, Matthew J. and Baxter, Jonathan and Guryev, Victor and Hofmann, Andreas and Heermann, Dieter W. and Juranek, Stefan A. and Paeschke, Katrin}, title={Telomerase subunit Est2 marks internal sites that are prone to accumulate DNA damage}, year={2021}, pages={1-15}, language={eng}, issn={1741-7007}, volume={19}, number={Artikel-ID 247}, note={Gesehen am 11.10.2022}, journal={BMC biology}, doi={10.1186/s12915-021-01167-1}, } @article{UBHD-68152638, author={Paul, Wolfgang and Binder, Kurt and Heermann, Dieter W. and Kremer, Kurt}, title={Crossover scaling in semidilute polymer solutions}, subtitle={a Monte Carlo test}, year={1991}, pages={37-60}, language={eng}, issn={1286-4870}, volume={1}, number={1}, note={Gesehen am 22.08.2017}, journal={Journal de physique}, doi={10.1051/jp2:1991138}, } @article{UBHD-68152191, author={Paul, Wolfgang and Heermann, Dieter W. and Kremer, Kurt}, title={Dynamics of polymer solutions and melts. Reptation predictions and scaling of relaxation times}, year={1991}, pages={7726-7740}, language={eng}, issn={1089-7690}, volume={95}, number={10}, note={Gesehen am 21.08.2017}, journal={The journal of chemical physics}, doi={10.1063/1.461346}, } @article{UBHD-67469815, author={Paul, Wolfgang and Heermann, Dieter W. and Desai, Rashmi C.}, title={Implementation of a random number generator in OCCAM}, year={1989}, pages={487-491}, language={eng}, issn={1090-2716}, volume={82}, number={2}, note={Gesehen am 11.09.2013}, journal={Journal of computational physics}, doi={10.1016/0021-9991(89)90059-4}, } @article{UBHD-67469810, author={Paul, Wolfgang and Heermann, Dieter W.}, title={Metastable states studied by relaxation paths}, year={1988}, pages={701-705}, language={eng}, issn={1286-4854}, volume={6}, number={8}, note={Gesehen am 07.11.2017}, journal={epl}, doi={10.1209/0295-5075/6/8/006}, } @article{UBHD-67470424, author={Paul, Wolfgang and Heermann, Dieter W. and Binder, Kurt}, title={Relaxation of metastable states in finite mean-field kinetic Ising systems}, year={1989}, pages={3325-3337}, language={eng}, issn={1751-8121}, volume={22}, number={16}, note={Gesehen am 12.09.2013}, journal={Journal of physics}, doi={10.1088/0305-4470/22/16/022}, } @article{UBHD-68152632, author={Paul, Wolfgang and Heermann, Dieter W. and Kremer, Kurt}, title={Self-diffusion in polymer solutions using the bond-fluctuation MC-algorithm}, year={1991}, pages={650-653}, language={eng}, issn={0022-3093}, volume={131}, note={Gesehen am 22.08.2017}, journal={Journal of non-crystalline solids}, doi={10.1016/0022-3093(91)90663-Q}, } @article{UBHD-68152636, author={Paul, Wolfgang and Kremer, Kurt and Heermann, Dieter W.}, title={Structure-property correlation of polymers, a Monte Carlo approach}, year={1991}, pages={6332-6334}, language={eng}, issn={1520-5835}, volume={24}, number={23}, note={Gesehen am 22.08.2017}, journal={Macromolecules}, doi={10.1021/ma00023a041}, } @article{UBHD-68964305, author={Reiss, Pascal and Fritsche, Miriam and Heermann, Dieter W.}, title={Looped star polymers show conformational transition from spherical to flat toroidal shapes}, year={2011}, pages={1-5}, language={eng}, issn={1550-2376}, volume={84}, note={Gesehen am 14.09.2022}, journal={Physical review}, doi={10.1103/PhysRevE.84.051910}, } @incollection{UBHD-68151782, author={Ritter, Silke and Odenheimer, Jens and Heermann, Dieter W.}, title={Modelling and simulation of polycomb-dependent chromosomal interactions in drosophila}, year={2005}, language={eng}, note={Gesehen am 18.08.2017}, booktitle={De.arxiv.org}, } @article{UBHD-67442639, author={Ritter, Silke and Odenheimer, Jens and Heermann, Dieter W.}, title={Modelling of polycomb-dependent chromosomal interactions involved in Drosophila gene silencing}, year={2006}, pages={757-767}, language={eng}, issn={1793-6586}, volume={17}, number={5}, note={Gesehen am 17.08.2017}, journal={International journal of modern physics}, doi={10.1142/S0129183106009400}, } @article{UBHD-67442646, author={Ritter, Silke and Odenheimer, Jens and Heermann, Dieter W.}, title={Modelling of polycomb-dependent chromosomal interactions involved in Drosophila gene silencing}, year={2006}, pages={141-151}, language={eng}, issn={1793-0480}, volume={1}, number={2}, note={Gesehen am 09.07.2013}, journal={Biophysical reviews and letters}, doi={10.1142/S179304800600015X}, } @article{UBHD-68146059, author={Rojas-Moraleda, Rodrigo and Xiong, Wei and Valous, Nektarios A. and Breitkopf-Heinlein, Katja and Dooley, Steven and Z{\"o}rnig, Inka and Heermann, Dieter W. and J{\"a}ger, Dirk}, title={Computational topology based quantification of hepatocytes nuclei In lipopolysaccharide-induced liver injury in mice}, year={2016}, pages={2 S.}, language={eng}, issn={2364-4893}, volume={1(2016}, note={Gesehen am 03.08.2017}, journal={Diagnostic pathology}, doi={10.17629/www.diagnosticpathology.eu-2016-8:143}, } @article{UBHD-68146047, author={Rojas-Moraleda, Rodrigo and Xiong, Wei and Halama, Niels and Breitkopf-Heinlein, Katja and Dooley, Steven and Heermann, Dieter W. and Valous, Nektarios A.}, title={Robust detection and segmentation of cell nuclei in biomedical images based on a computational topology framework}, year={2017}, pages={90-103}, language={eng}, issn={1361-8423}, volume={38}, note={Gesehen am 03.08.2017}, journal={Medical image analysis}, doi={10.1016/j.media.2017.02.009}, } @article{UBHD-67470423, author={Rovere, Marzia and Heermann, Dieter W. and Binder, Kurt}, title={Block density distribution function analysis of two-dimensional Lennard-Jones Fluids}, year={1988}, pages={585-590}, language={eng}, issn={1286-4854}, volume={6}, number={7}, note={Gesehen am 07.11.2017}, journal={epl}, doi={10.1209/0295-5075/6/7/003}, } @article{UBHD-68154412, author={Rovere, Marzia and Heermann, Dieter W. and Binder, Kurt}, title={The gas-liquid transition of the two-dimensional Lennard-Jones fluid}, year={1990}, pages={7009-70032}, language={eng}, issn={1361-648X}, volume={2}, number={33}, note={Gesehen am 28.08.2017}, journal={Journal of physics}, doi={10.1088/0953-8984/2/33/013}, } @article{UBHD-67466631, author={Sariban, Alla and Binder, Kurt and Heermann, Dieter W.}, title={Critical phenomena in polymer mixtures}, subtitle={Monte Carlo simulation of a lattice model}, year={1987}, pages={424-431}, language={eng}, issn={1435-1536}, volume={265}, number={5}, journal={Colloid & polymer science}, doi={10.1007/BF01412220}, } @article{UBHD-67466630, author={Sariban, Alla and Binder, Kurt and Heermann, Dieter W.}, title={Monte Carlo test of the Flory-Huggins theory for polymer mixtures}, year={1987}, pages={6873-6876}, language={eng}, issn={1550-235X}, volume={35}, number={13}, journal={Physical review}, doi={10.1103/PhysRevB.35.6873}, } @article{UBHD-68146052, author={Schmidt, Sebastian F. M. and Koo, Changhyun and Park, Jaena and Heermann, Dieter W. and Klingeler, R{\"u}diger}, title={A three-pronged attack to investigate the electronic structure of a family of ferromagnetic Fe 4 Ln 2 cyclic coordination clusters}, subtitle={a combined magnetic susceptibility, high-field/high-frequency electron paramagnetic resonance, and 57 Fe M{\"o}ssbauer study}, year={2017}, pages={4796-4806}, language={eng}, issn={1520-510X}, volume={56}, number={9}, note={Gesehen am 03.08.2017 ; Im Titel "2" und "4"tiefgestellt, "57" hochgestellt}, journal={Inorganic chemistry}, doi={10.1021/acs.inorgchem.6b02682}, } @article{UBHD-67448027, author={Sch{\"o}ppe, Gunther and Heermann, Dieter W.}, title={Alternative off-lattice model with continuous backbone mass for polymers}, year={1999}, pages={636-641}, language={eng}, issn={1550-2376}, volume={59}, number={1}, note={Gesehen am 29.08.2013}, journal={Physical review}, doi={10.1103/PhysRevE.59.636}, } @book{UBHD-67451432, author={Sch{\"o}ppe, Gunther and Heermann, Dieter W.}, title={Simulation of polymers using the ellipsoidal model}, publisher={Institut f{\"u}r Theoretische Physik}, address={Heidelberg}, year={1997}, pages={Online-Ressource (5 S.)}, language={eng}, note={Gesehen am 06.03.2014}, } @article{UBHD-68153080, author={Sommer, Klaus and Heermann, Dieter W. and Kremer, Kurt}, title={Correlation between primary chemical structure and property phenomena in polycondensates}, subtitle={dedicated to Professor K.-H. B{\"u}chel on the occasion of his 60th birthday}, year={1991}, pages={590-599}, language={eng}, issn={1521-4095}, volume={3}, number={12}, note={Gesehen am 23.08.2017}, journal={Advanced materials}, doi={10.1002/adma.19910031204}, } @article{UBHD-67464348, author={Stauffer, Dietrich and Coniglio, Antonio and Heermann, Dieter W.}, title={Monte Carlo experiment for nucleation rate in the three-dimensional Ising model}, year={1982}, pages={1299-1302}, language={eng}, issn={1079-7114}, volume={49}, number={18}, note={Gesehen am 29.8.2013}, journal={Physical review letters}, doi={10.1103/PhysRevLett.49.1299}, } @incollection{UBHD-67441615, author={Stauffer, Dietrich and Schulze, Christian and Heermann, Dieter W.}, title={Superdiffusion in a model for diffusion in a molecularly crowded environment}, year={2007}, pages={?}, language={eng}, note={Gesehen am 08.07.2013}, booktitle={De.arxiv.org}, } @article{UBHD-67437854, author={Tark-Dame, Mariliis and Driel, Roeland van and Heermann, Dieter W.}, title={Chromatin folding}, subtitle={from biology to polymer models and back}, year={2011}, pages={839-845}, language={eng}, issn={1477-9137}, volume={124}, note={Gesehen am 29.08.2013}, journal={Journal of cell science}, doi={10.1242/​jcs.077628}, } @article{UBHD-67688205, author={Tark-Dame, Mariliis and Jerabek, Hansj{\"o}rg and Heermann, Dieter W.}, title={Depletion of the chromatin looping proteins CTCF and cohesin causes chromatin compaction}, subtitle={insight into chromatin folding by polymer modelling}, year={2014}, language={eng}, issn={1553-7358}, volume={10(2014}, note={Gesehen am 16.10.2014}, journal={PLoS Computational Biology}, doi={10.1371/journal.pcbi.1003877}, } @incollection{UBHD-67436535, author={Tark-Dame, Mariliis and Heermann, Dieter W.}, title={Understanding genome function}, subtitle={quantitative modeling of chromatin folding and chromatin-associated processes}, year={2011}, pages={535-555}, language={eng}, isbn={978-3-527-64001-0}, booktitle={Genome organization and function in the cell nucleus}, editor={Rippe, Karsten}, doi={10.1002/9783527639991.ch20}, } @article{UBHD-67448025, author={Wang, Ting and Heermann, Dieter W. and Heilig, Jean-Claude}, title={Diffusion of gas molecules in the polystyrene matrix}, year={2000}, pages={687-697}, language={eng}, issn={1521-3919}, volume={9}, number={9}, note={Gesehen am 19.07.2013}, journal={Macromolecular theory and simulations}, } @article{UBHD-67454883, author={Wilding, Nigel B. and M{\"u}nkel, Christian and Heermann, Dieter W.}, title={Domain growth and finite-size-scaling in the kinetic Ising model}, year={1994}, pages={301-309}, language={eng}, issn={1431-584X}, volume={94}, number={3}, note={Gesehen am 29.08.2013}, journal={Zeitschrift f{\"u}r Physik}, doi={10.1007/BF01320683}, } @article{UBHD-67454877, author={Wilding, Nigel B. and Heermann, Dieter W.}, title={A Monte Carlo study of the Ising model with uniaxial anisotropy}, year={1994}, pages={51-56}, language={eng}, issn={1873-4766}, volume={135}, number={1}, note={Gesehen am 06.08.2013}, journal={Journal of magnetism and magnetic materials}, } @conference{UBHD-68152624, author={Xing, Fei and Eisele, J{\"o}rg and Bastian, Peter and Heermann, Dieter W.}, title={Computational complexity of agent-based multi-scale cancer modeling}, year={2015}, pages={?}, language={eng}, isbn={978-1-5108-1059-4}, note={Gesehen am 19.09.2017}, } @article{UBHD-67549397, author={Zhang, Yang and Heermann, Dieter W.}, title={DNA double-strand breaks}, subtitle={linking gene expression to chromosome morphology and mobility}, year={2013}, pages={?}, language={eng}, issn={1432-0886}, volume={122}, number={?}, note={Gesehen 11.03.2014}, journal={Chromosoma}, doi={10.1007/s00412-013-0432-y}, } @article{UBHD-67434175, author={Zhang, Yang and Heermann, Dieter W.}, title={Loops determine the mechanical properties of mitotic chromosomes}, year={2011}, language={eng}, issn={1932-6203}, volume={6(2011}, number={12) Artikel-Nr. e29225}, note={Gesehen am 26.06.2013}, journal={PLOS ONE}, doi={10.1371/journal.pone.0029225}, } @article{UBHD-67673512, author={Zhang, Yang and Heermann, Dieter W.}, title={Mechanics of sister chromatids studied with a polymer model}, year={2013}, pages={?}, language={eng}, issn={2095-0470}, volume={8}, number={10}, note={Gesehen am 12.09.2014}, journal={Frontiers of physics}, doi={10.3389/fphy.2013.00016}, } @article{UBHD-67866401, author={Zhang, Yang and Máté, Gabriell and M{\"u}ller, Patrick and Hillebrandt, Sabina and Krufczik, Matthias and Bach, Margund and Kaufmann, Rainer and Hausmann, Michael and Heermann, Dieter W.}, title={Radiation induced chromatin conformation changes analysed by fluorescent localization microscopy, statistical physics, and graph theory}, year={2015}, pages={23 S.}, language={eng}, issn={1932-6203}, volume={10(2015}, note={Gesehen am 31.08.2015}, journal={PLOS ONE}, doi={10.1371/journal.pone.0128555}, url={http://dx.doi.org/10.1371/journal.pone.0128555}, library={UB}, } @article{UBHD-67454230, author={Zimmer, Klaus Martin and Linke, Andreas and Heermann, Dieter W.}, title={Ellipsoidal potential parameterization for bisphenol-A polycarbonate}, year={1996}, pages={1065-1074}, language={eng}, issn={1521-3919}, volume={5}, number={6}, note={Gesehen am 05.08.2013}, journal={Macromolecular theory and simulations}, doi={10.1002/mats.1996.040050604}, }