@article{UBHD-68304264,
  author={Abazova, Nadeshda and Krijgsveld, Jeroen},
  title={Advances in stem cell proteomics},
  year={2017},
  pages={149-155},
  language={eng},
  issn={1879-0380},
  volume={46},
  note={Gesehen am 12.09.2018},
  journal={Current opinion in genetics & development},
  doi={10.1016/j.gde.2017.07.007},
}
@article{UBHD-68443731,
  author={Ali Khan, Asrar and Hansson, Jenny and Weber, Peter and F{\"o}hr, Sophia and Krijgsveld, Jeroen and Herzig, Stephan and Scheideler, Marcel},
  title={Comparative secretome analyses of primary murine white and brown adipocytes reveal novel adipokines},
  year={2018},
  pages={2358-2370},
  language={eng},
  issn={1535-9484},
  volume={17},
  number={12},
  note={Gesehen am 22.10.2019},
  journal={Molecular & cellular proteomics},
  doi={10.1074/mcp.RA118.000704},
}
@article{UBHD-69262076,
  author={Bakr, Ali and Corte, Giuditta Della and Veselinov, Olivera and Kelekçi, Simge and Chen, Mei-Ju May and Lin, Yu-Yu and Sigismondo, Gianluca and Iacovone, Marika and Cross, Alice and Syed, Rabail and Jeong, Yunhee and Sollier, Etienne and Liu, Chun- Shan and Lutsik, Pavlo and Krijgsveld, Jeroen and Weichenhan, Dieter and Plass, Christoph and Popanda, Odilia and Schmezer, Peter},
  title={ARID1A regulates DNA repair through chromatin organization and its deficiency triggers DNA damage-mediated anti-tumor immune response},
  year={2024},
  pages={5698-5719},
  language={eng},
  issn={1362-4962},
  volume={52},
  number={10},
  note={Ver{\"o}ffentlicht: 08 April 2024 ; Gesehen am 14.10.2024},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkae233},
}
@article{UBHD-68871334,
  author={Bakr, Ali and Hey, Joschka and Sigismondo, Gianluca and Liu, Chun-Shan and Sadik, Ahmed and Goyal, Ashish and Cross, Alice and Iyer, Ramya Lakshmana and M{\"u}ller, Patrick and Trauernicht, Max and Breuer, Kersten and Lutsik, Pavlo and Opitz, Christiane and Krijgsveld, Jeroen and Weichenhan, Dieter and Plass, Christoph and Popanda, Odilia and Schmezer, Peter},
  title={ID3 promotes homologous recombination via non-transcriptional and transcriptional mechanisms and its loss confers sensitivity to PARP inhibition},
  year={2021},
  pages={11666-11689},
  language={eng},
  issn={1362-4962},
  volume={49},
  number={20},
  note={Gesehen am 27.01.2022},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkab964},
}
@article{UBHD-68649074,
  author={Bhuvanagiri, Madhuri and Becker, Jonas Philipp and Krijgsveld, Jeroen and Jovanovic, Bogdan and Sieber, Jana and Hentze, Matthias W. and Kulozik, Andreas},
  title={5-azacytidine inhibits nonsense-mediated decay in a MYC-dependent fashion},
  year={2014},
  pages={1593-1609},
  language={eng},
  issn={1757-4684},
  volume={6},
  number={12},
  note={Gesehen am 15.10.2020},
  journal={EMBO molecular medicine},
  doi={10.15252/emmm.201404461},
}
@article{UBHD-69185474,
  author={Bortecen, Toman and M{\"u}ller, Torsten and Krijgsveld, Jeroen},
  title={An integrated workflow for quantitative analysis of the newly synthesized proteome},
  year={2023},
  pages={1-16},
  language={eng},
  issn={2041-1723},
  volume={14},
  number={Artikel-ID 8237},
  note={Gesehen am 26.02.2024},
  journal={Nature Communications},
  doi={10.1038/s41467-023-43919-3},
}
@article{UBHD-68407635,
  author={Boßler, Felicitas Martha and R{\"o}sl, Frank and Krijgsveld, Jeroen and Hoppe-Seyler, Karin and Hoppe-Seyler, Felix},
  title={Repression of human papillomavirus oncogene expression under hypoxia is mediated by PI3K/mTORC2/AKT signaling},
  year={2019},
  pages={16 S.},
  language={eng},
  issn={2150-7511},
  volume={10(2019},
  note={Gesehen am 11.07.2019},
  journal={mBio},
  doi={10.1128/mBio.02323-18},
}
@article{UBHD-68443705,
  author={Buczak, Katarzyna and Holzer, Kerstin and R{\"o}ssler, Stephanie and Endris, Volker and Lasitschka, Felix and Schirmacher, Peter and Krijgsveld, Jeroen and Singer, Stephan},
  title={Spatial tissue proteomics quantifies inter- and intratumor heterogeneity in hepatocellular carcinoma (HCC)},
  year={2018},
  pages={810-825},
  language={eng},
  issn={1535-9484},
  volume={17},
  number={4},
  note={Gesehen am 22.10.2019},
  journal={Molecular & cellular proteomics},
  doi={10.1074/mcp.RA117.000189},
}
@article{UBHD-68626083,
  author={Bunina, Daria and Abazova, Nadeshda and Diaz, Nichole and Noh, Kyung-Min and Krijgsveld, Jeroen and Zaugg, Judith B.},
  title={Genomic rewiring of SOX2 chromatin interaction network during differentiation of ESCs to postmitotic neurons},
  year={2020},
  pages={23 S.},
  language={eng},
  issn={2405-4720},
  volume={10},
  note={Gesehen am 10.08.2020},
  journal={Cell systems},
  doi={10.1016/j.cels.2020.05.003},
}
@article{UBHD-68616811,
  author={Cabezas Wallscheid, Nina and Klimmeck, Daniel and Hansson, Jenny and Lipka, Daniel and Reyes, Alejandro and Wang, Qi and Weichenhan, Dieter and Lier, Amelie and Paleske, Lisa von and Renders, Simon and W{\"u}nsche, Peer and Zeisberger, Petra and Brocks, David and Gu, Lei and Herrmann, Carl and Haas, Simon and Essers, Marieke and Brors, Benedikt and Eils, Roland and Huber, Wolfgang and Milsom, Michael and Plass, Christoph and Krijgsveld, Jeroen and Trumpp, Andreas},
  title={Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis},
  year={2014},
  pages={507-522},
  language={eng},
  issn={1875-9777},
  volume={15},
  number={4},
  note={Gesehen am 14.07.2020},
  journal={Cell stem cell},
  doi={10.1016/j.stem.2014.07.005},
}
@article{UBHD-68558461,
  author={Cagnetta, Roberta and Frese, Christian K. and Shigeoka, Toshiaki and Krijgsveld, Jeroen and Holt, Christine E.},
  title={Rapid cue-specific remodeling of the nascent axonal proteome},
  year={2018},
  pages={22 S.},
  language={eng},
  issn={1097-4199},
  volume={99},
  note={Gesehen am 26.03.2020},
  journal={Neuron},
  doi={10.1016/j.neuron.2018.06.004},
}
@article{UBHD-68646275,
  author={Carnesecchi, Julie and Sigismondo, Gianluca and Domsch, Katrin and Baader, Clara Eva Paula and Rafiee, Mahmoud-Reza and Krijgsveld, Jeroen and Lohmann, Ingrid},
  title={Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity},
  year={2020},
  pages={17 S.},
  language={eng},
  issn={2041-1723},
  volume={11(2020) Artikel-Nummer 1388},
  number={17 Seiten},
  note={Gesehen am 08.10.2020},
  journal={Nature Communications},
  doi={10.1038/s41467-020-15223-x},
}
@article{UBHD-68315331,
  author={Castello, Alfredo and F{\"o}hr, Sophia and Krijgsveld, Jeroen and Hentze, Matthias W.},
  title={Identification of RNA-binding domains of RNA-binding proteins in cultured cells on a system-wide scale with RBDmap},
  year={2017},
  pages={2447-2464},
  language={eng},
  issn={1750-2799},
  volume={12},
  number={12},
  note={Gesehen am 15.10.2018},
  journal={Nature protocols},
  doi={10.1038/nprot.2017.106},
}
@article{UBHD-68379385,
  author={Chang, Lei and Krijgsveld, Jeroen},
  title={The SWI/SNF complex is a mechanoregulated inhibitor of YAP and TAZ},
  year={2018},
  pages={265-269},
  language={eng},
  issn={1476-4687},
  volume={563},
  note={Gesehen am 09.04.2019},
  journal={Nature},
  doi={10.1038/s41586-018-0658-1},
}
@article{UBHD-68717687,
  author={Delacher, Michael and Barra, Melanie M. and Herzig, Yonatan and Eichelbaum, Katrin and Rafiee, Mahmoud-Reza and Richards, David and Tr{\"a}ger, Ulrike and Hofer, Ann-Cathrin and Kazakov, Alexander and Braband, Kathrin L. and Gonzalez, Marina and W{\"o}hrl, Lukas and Schambeck, Kathrin and Imbusch, Charles and Abramson, Jakub and Krijgsveld, Jeroen and Feuerer, Markus},
  title={Quantitative proteomics identifies TCF1 as a negative regulator of Foxp3 expression in conventional T cells},
  year={2020},
  pages={1-15},
  language={eng},
  issn={2589-0042},
  volume={23},
  note={Gesehen am 29.03.2021},
  journal={iScience},
  doi={10.1016/j.isci.2020.101127},
}
@article{UBHD-68493023,
  author={Dewari, Pooran Singh and Southgate, Benjamin and Mccarten, Katrina and Monogarov, German and Krijgsveld, Jeroen},
  title={An efficient and scalable pipeline for epitope tagging in mammalian stem cells using Cas9 ribonucleoprotein},
  year={2018},
  pages={1-29},
  language={eng},
  issn={2050-084X},
  volume={7},
  number={Artikel-ID e35069},
  note={Gesehen am 25.02.2020},
  journal={eLife},
  doi={10.7554/eLife.35069},
}
@article{UBHD-68746998,
  author={Ecker, Jonas and Thatikonda, Venu and Sigismondo, Gianluca and Selt, Florian and Valinciute, Gintvile and Oehme, Ina and M{\"u}ller, Carina and Buhl, Juliane and Ridinger, Johannes and Usta, Diren and Qin, Nan and Tilburg, Cornelis M. van and Herold-Mende, Christel and Remke, Marc and Sahm, Felix and Westermann, Frank and Kool, Marcel and Wechsler-Reya, Robert J. and Chavez, Lukas and Krijgsveld, Jeroen and J{\"a}ger, Natalie and Pfister, Stefan and Witt, Olaf and Milde, Till},
  title={Reduced chromatin binding of MYC is a key effect of HDAC inhibition in MYC amplified medulloblastoma},
  year={2021},
  pages={226-239},
  language={eng},
  issn={1523-5866},
  volume={23},
  number={2 vom: Feb.},
  note={Gesehen am 10.06.2021 ; First published: 21 August 2020},
  journal={Neuro-Oncology},
  doi={10.1093/neuonc/noaa191},
}
@article{UBHD-68311180,
  author={Eichelbaum, Katrin and Krijgsveld, Jeroen},
  title={Selective enrichment of newly synthesized proteins for quantitative secretome analysis},
  year={2012},
  pages={984-990},
  language={eng},
  issn={1546-1696},
  volume={30},
  number={10},
  note={Gesehen am 02.10.2018},
  journal={Nature biotechnology},
  doi={10.1038/nbt.2356},
}
@article{UBHD-68403640,
  author={Erich, Katrin and M{\"u}ller, Torsten and Abu Sammour, Denis and Hinsenkamp, Isabel and Gutting, Tobias and Burgermeister, Elke and Findeisen, Peter and Ebert, Matthias and Krijgsveld, Jeroen and Hopf, Carsten},
  title={Spatial distribution of endogenous tissue protease activity in gastric carcinoma mapped by MALDI Mass Spectrometry Imaging},
  year={2019},
  pages={151-161},
  language={eng},
  issn={1535-9484},
  volume={18},
  number={1},
  note={Gesehen am 02.07.2019},
  journal={Molecular & cellular proteomics},
  doi={10.1074/mcp.RA118.000980},
}
@article{UBHD-69149225,
  author={Fatti, Edoardo and Hirth, Alexander and Švorinić, Andrea and G{\"u}nther, Matthias and Stier, Gunter and Cruciat, Cristina-Maria and Acebron, Sergio P. and Papageorgiou, Dimitris and Sinning, Irmgard and Krijgsveld, Jeroen and H{\"o}fer, Thomas and Niehrs, Christof},
  title={DEAD box RNA helicases act as nucleotide exchange factors for casein kinase 2},
  year={2023},
  pages={?},
  language={eng},
  issn={1937-9145},
  volume={16},
  note={Gesehen am 04.12.2023},
  journal={Science signaling},
  doi={10.1126/scisignal.abp8923},
}
@article{UBHD-69006758,
  author={Gegner, Hagen M. and Naake, Thomas and Dugourd, Aurélien and M{\"u}ller, Torsten and Czernilofsky, Felix and Kliewer, Georg and J{\"a}ger, Evelyn and Helm, Barbara and Kunze-Rohrbach, Nina and Klingm{\"u}ller, Ursula and Hopf, Carsten and M{\"u}ller-Tidow, Carsten and Dietrich, Sascha and Sáez Rodríguez, Julio and Huber, Wolfgang and Hell, R{\"u}diger and Poschet, Gernot and Krijgsveld, Jeroen},
  title={Pre-analytical processing of plasma and serum samples for combined proteome and metabolome analysis},
  year={2022},
  pages={1-13},
  language={eng},
  issn={2296-889X},
  volume={9},
  number={Artikel-ID 961448},
  note={Gesehen am 16.01.2023},
  journal={Frontiers in molecular biosciences},
  doi={10.3389/fmolb.2022.961448},
  url={https://doi.org/10.3389/fmolb.2022.961448},
  library={UB},
}
@article{UBHD-69289211,
  author={Gegner, Hagen M. and Naake, Thomas and Aljakouch, Karim and Dugourd, Aurélien and Kliewer, Georg and M{\"u}ller, Torsten and Schilling, Dustin and Schneider, Marc and Kunze-Rohrbach, Nina and Gr{\"u}newald, Thomas G. P. and Hell, R{\"u}diger and Sáez Rodríguez, Julio and Huber, Wolfgang and Poschet, Gernot and Krijgsveld, Jeroen},
  title={A single-sample workflow for joint metabolomic and proteomic analysis of clinical specimens},
  year={2024},
  pages={1-17},
  language={eng},
  issn={1559-0275},
  volume={21},
  number={Artikel-ID 49},
  note={Gesehen am 10.01.2025},
  journal={Clinical proteomics},
  doi={10.1186/s12014-024-09501-9},
}
@article{UBHD-68633902,
  author={Haberkant, Per and Stein, Frank and H{\"o}glinger, Doris and Gerl, Mathias and Br{\"u}gger, Britta and Van Veldhoven, Paul P. and Krijgsveld, Jeroen and Gavin, Anne-Claude and Schultz, Carsten},
  title={Bifunctional sphingosine for cell-based analysis of protein-sphingolipid interactions},
  year={2016},
  pages={222-230},
  language={eng},
  issn={1554-8937},
  volume={11},
  number={1},
  note={Published: November 11, 2015 ; Gesehen am 02.09.2020},
  journal={ACS chemical biology},
  doi={10.1021/acschembio.5b00810},
}
@article{UBHD-69196033,
  author={Heber, Nora and Kuhn, Bianca and Strobel, Tobias and Lohrey, Claudia and Krijgsveld, Jeroen and Hoppe-Seyler, Karin and Hoppe-Seyler, Felix},
  title={The impact of cycling hypoxia on the phenotype of HPV-positive cervical cancer cells},
  year={2023},
  pages={1-16},
  language={eng},
  issn={1096-9071},
  volume={95},
  note={Gesehen am 28.03.2024},
  journal={Journal of medical virology},
  doi={10.1002/jmv.29280},
}
@article{UBHD-68930268,
  author={Herrmann, Anja and Kuhn, Bianca and Holzer, Angela and Krijgsveld, Jeroen and Hoppe-Seyler, Karin and Hoppe-Seyler, Felix},
  title={Delineating the switch between senescence and apoptosis in cervical cancer cells under ciclopirox treatment},
  year={2022},
  pages={1-17},
  language={eng},
  issn={2072-6694},
  volume={13},
  note={Published: 6 February 2022 ; Gesehen am 13.06.2022},
  journal={Cancers},
  doi={10.3390/cancers13194995},
}
@article{UBHD-69331236,
  author={Hirth, Alexander and Fatti, Edoardo and Netz, Eugen and Acebron, Sergio P. and Papageorgiou, Dimitris and Švorinić, Andrea and Sirrenberg-Cruciat, Cristina-Maria and Karaulanov, Emil and Gopanenko, Alexandr and Zhu, Tianheng and Sinning, Irmgard and Krijgsveld, Jeroen and Kohlbacher, Oliver and Niehrs, Christof},
  title={DEAD box RNA helicases are pervasive protein kinase interactors and activators},
  year={2024},
  pages={952-966},
  language={eng},
  issn={1549-5469},
  volume={34},
  number={6},
  note={Gesehen am 15.04.2025},
  journal={Genome research},
  doi={10.1101/gr.278264.123},
}
@article{UBHD-68935763,
  author={Hisaoka, Miharu and Schott, Johanna and Bortecen, Toman and Lindner, Doris and Krijgsveld, Jeroen and Stoecklin, Georg},
  title={Preferential translation of p53 target genes},
  year={2022},
  pages={437-452},
  language={eng},
  issn={1555-8584},
  volume={19},
  number={1},
  note={Gesehen am 29.06.2022},
  journal={RNA biology},
  doi={10.1080/15476286.2022.2048562},
}
@article{UBHD-68459709,
  author={H{\"u}bner, Jens-Martin and M{\"u}ller, Torsten and Krijgsveld, Jeroen and Russell, Robert B. and Pfister, Stefan and Pajtler, Kristian Wilfried and Kool, Marcel},
  title={EZHIP/CXorf67 mimics K27M mutated oncohistones and functions as an intrinsic inhibitor of PRC2 function in aggressive posterior fossa ependymoma},
  year={2019},
  pages={878-889},
  language={eng},
  issn={1523-5866},
  volume={21},
  number={7},
  note={Gesehen am 25.11.2019},
  journal={Neuro-Oncology},
  doi={10.1093/neuonc/noz058},
}
@article{UBHD-68311177,
  author={Hughes, Christopher and Krijgsveld, Jeroen},
  title={Developments in quantitative mass spectrometry for the analysis of proteome dynamics},
  year={2012},
  pages={668-676},
  language={eng},
  issn={1879-3096},
  volume={30},
  number={12},
  note={Gesehen am 02.10.2018},
  journal={Trends in biotechnology},
  doi={10.1016/j.tibtech.2012.09.007},
}
@article{UBHD-68396530,
  author={Hughes, Christopher and M{\"u}ller, Torsten and Krijgsveld, Jeroen},
  title={Single-pot, solid-phase-enhanced sample preparation for proteomics experiments},
  year={2019},
  pages={68-85},
  language={eng},
  issn={1750-2799},
  volume={14},
  number={1},
  note={ Published: 21 November 2018 ; Gesehen am 05.06.2019},
  journal={Nature protocols},
  doi={10.1038/s41596-018-0082-x},
}
@article{UBHD-69155696,
  author={Janssen, Maike and Schmidt, Christina and Bruch, Peter-Martin and Blank, Maximilian Felix and Rohde, Christian and Waclawiczek, Alexander and Heid, Daniel and Renders, Simon and G{\"o}llner, Stefanie and Vierbaum, Lisa and Besenbeck, Birgit and Herbst, Sophie and Knoll, Mareike and Kolb, Carolin and Przybylla, Adriana and Weidenauer, Katharina and Ludwig, Anne Kathrin and Fabre, Margarete and Gu, Muxin and Schlenk, Richard Friedrich and St{\"o}lzel, Friedrich and Bornh{\"a}user, Martin and R{\"o}llig, Christoph and Platzbecker, Uwe and Baldus, Claudia and Serve, Hubert and Sauer, Tim and Raffel, Simon and Pabst, Caroline and Vassiliou, George and Vick, Binje and Jeremias, Irmela and Trumpp, Andreas and Krijgsveld, Jeroen and M{\"u}ller-Tidow, Carsten and Dietrich, Sascha},
  title={Venetoclax synergizes with gilteritinib in FLT3 wild-type high-risk acute myeloid leukemia by suppressing MCL-1},
  year={2022},
  pages={2594-2610},
  language={eng},
  issn={1528-0020},
  volume={140},
  number={24},
  note={Gesehen am 21.12.2023},
  journal={Blood},
  doi={10.1182/blood.2021014241},
}
@article{UBHD-69340420,
  author={Jiang, Xiangli and Baig, Ali Hyder and Palazzo, Giuliana and Pizzo, Rossella del and Bortecen, Toman and Gr{\"o}ßl, Sven and Zaal, Esther A. and Amaya Ramirez, Cinthia and Kowar, Alexander and Avilés Huerta, Daniela and Berkers, Celia R. and Palm, Wilhelm and Tschaharganeh, Darjus-Felix and Krijgsveld, Jeroen and Loayza-Puch, Fabricio},
  title={P53-dependent hypusination of eIF5A affects mitochondrial translation and senescence immune surveillance},
  year={2024},
  pages={1-16},
  language={eng},
  issn={2041-1723},
  volume={15},
  number={Artikel-ID 7458},
  note={Gesehen am 30.04.2025},
  journal={Nature Communications},
  doi={10.1038/s41467-024-51901-w},
}
@article{UBHD-68949298,
  author={Kalxdorf, Mathias and M{\"u}ller, Torsten and Stegle, Oliver and Krijgsveld, Jeroen},
  title={IceR improves proteome coverage and data completeness in global and single-cell proteomics},
  year={2021},
  pages={1-15},
  language={eng},
  issn={2041-1723},
  volume={12},
  number={Artikel-ID 4787},
  note={Gesehen am 02.08.2022},
  journal={Nature Communications},
  doi={10.1038/s41467-021-25077-6},
}
@article{UBHD-68580684,
  author={Kramer, Gertjan and Krijgsveld, Jeroen},
  title={Turning over paradigms in protein decay},
  year={2016},
  pages={284-285},
  language={eng},
  issn={1878-1551},
  volume={39},
  number={3},
  note={Gesehen am 26.05.2020},
  journal={Developmental cell},
  doi={10.1016/j.devcel.2016.10.018},
}
@article{UBHD-69318553,
  author={Krull, Karl Kristian and Ali, Syed Azmal and Krijgsveld, Jeroen},
  title={Enhanced feature matching in single-cell proteomics characterizes IFN-γ response and co-existence of cell states},
  year={2024},
  pages={1-17},
  language={eng},
  issn={2041-1723},
  volume={15},
  number={Artikel-ID 8262},
  note={Online ver{\"o}ffentlicht: 26. September 2024 ; Gesehen am 14.03.2025},
  journal={Nature Communications},
  doi={10.1038/s41467-024-52605-x},
}
@article{UBHD-68669313,
  author={Kuhn, Tim Christian and Knobel, Johannes and Burkert-Rettenmaier, Sonja and Li, Xue and Meyer, S{\"o}ren and Jungmann, Andreas and Sicklinger, Florian and Backs, Johannes and Lasitschka, Felix and M{\"u}ller, Oliver J. and Katus, Hugo and Krijgsveld, Jeroen and Leuschner, Florian},
  title={Secretome analysis of cardiomyocytes identifies PCSK6 (proprotein convertase subtilisin/kexin type 6) as a novel player in cardiac remodeling after myocardial infarction},
  year={2020},
  pages={1628-1644},
  language={eng},
  issn={1524-4539},
  volume={141},
  number={20},
  note={Gesehen am 04.12.2020},
  journal={Circulation},
  doi={10.1161/CIRCULATIONAHA.119.044914},
}
@article{UBHD-68583866,
  author={Liepelt, Anke and Naarmann-de Vries, Isabel S. and Simons-Weidenmaier, Nadine and Eichelbaum, Katrin and F{\"o}hr, Sophia and Archer, Stuart K. and Castello, Alfredo and Usadel, Bj{\"o}rn and Krijgsveld, Jeroen and Preiss, Thomas and Marx, Gernot and Hentze, Matthias W. and Ostareck, Dirk H. and Ostareck-Lederer, Antje},
  title={Identification of RNA-binding proteins in macrophages by interactome capture},
  year={2016},
  pages={2699-2714},
  language={eng},
  issn={1535-9484},
  volume={15},
  number={8},
  note={Published as Manuscript M115.056564 ; Gesehen am 04.06.2020},
  journal={Molecular & cellular proteomics},
  doi={10.1074/mcp.M115.056564},
}
@article{UBHD-69236299,
  author={Mancarella, Daniela and Ellinghaus, Henrik and Sigismondo, Gianluca and Veselinov, Olivera and K{\"u}hn, Alexander and Goyal, Ashish and Hartmann, Mark and Fellenberg, J{\"o}rg and Krijgsveld, Jeroen and Plass, Christoph and Popanda, Odilia and Schmezer, Peter and Bakr, Ali},
  title={Deposition of onco-histone H3.3-G34W leads to DNA repair deficiency and activates cGAS/STING-mediated immune responses},
  year={2024},
  pages={2106-2120},
  language={eng},
  issn={1097-0215},
  volume={154},
  number={12},
  note={Gesehen am 22.07.2024},
  journal={International journal of cancer},
  doi={10.1002/ijc.34883},
}
@article{UBHD-68919327,
  author={Meirow, Yaron and Jovanovic, Milena and Zur, Yuval and Habib, Juliana and Colombo, Daniele Filippo and Twaik, Nira and Ashkenazi-Preiser, Hadas and Ben-Meir, Kerem and Mikula, Ivan and Reuven, Or and Kariv, Guy and Daniel, Leonor and Baraghithy, Saja and Klein, Yehuda and Krijgsveld, Jeroen and Levaot, Noam and Baniyash, Michal},
  title={Specific inflammatory osteoclast precursors induced during chronic inflammation give rise to highly active osteoclasts associated with inflammatory bone loss},
  year={2022},
  pages={1-17},
  language={eng},
  issn={2095-6231},
  volume={10},
  note={Gesehen am 17.05.2022},
  journal={Bone research},
  doi={10.1038/s41413-022-00206-z},
}
@article{UBHD-68704934,
  author={M{\"u}ller, Torsten and Boileau, Etienne and Talyan, Sweta and Kehr, Dorothea and Varadi, Karl and Busch, Martin and Most, Patrick and Krijgsveld, Jeroen and Dieterich, Christoph},
  title={Updated and enhanced pig cardiac transcriptome based on long-read RNA sequencing and proteomics},
  year={2021},
  pages={23-31},
  language={eng},
  issn={1095-8584},
  volume={150},
  note={Available online 10 October 2020 ; Gesehen am 01.03.2021},
  journal={Journal of molecular and cellular cardiology},
  doi={10.1016/j.yjmcc.2020.10.005},
}
@article{UBHD-68318044,
  author={N{\"o}tzold, Linda and Frank, Lukas and Polycarpou-Schwarz, Maria and Gunkel, Manuel and Beil, Nina and Erfle, Holger and Harder, Nathalie and Rohr, Karl and Krijgsveld, Jeroen and Longerich, Thomas and Schirmacher, Peter and Boutros, Michael and Erhardt, Sylvia and Diederichs, Sven},
  title={The long non-coding RNA LINC00152 is essential for cell cycle progression through mitosis in HeLa cells},
  year={2017},
  pages={13 S.},
  language={eng},
  issn={2045-2322},
  volume={7(2017) Artikel-Nummer 2265},
  number={13 Seiten},
  note={Published online 23 May 2017 ; Gesehen am 17.10.2018},
  journal={Scientific reports},
  doi={10.1038/s41598-017-02357-0},
}
@article{UBHD-68291924,
  author={Okawa, Satoshi and Krijgsveld, Jeroen},
  title={Proteome and secretome characterization of glioblastoma-derived neural stem cells},
  year={2017},
  pages={967-980},
  language={eng},
  issn={1549-4918},
  volume={35},
  number={4},
  note={First published online November 21, 2016 ; Gesehen am 03.08.2018},
  journal={Stem cells},
  doi={10.1002/stem.2542},
}
@article{UBHD-68761325,
  author={Paakinaho, Ville and Lempi{\"a}inen, Joanna K. and Sigismondo, Gianluca and Niskanen, Einari A. and Malinen, Marjo and J{\"a}{\"a}skel{\"a}inen, Tiina and Varjosalo, Markku and Krijgsveld, Jeroen and Palvimo, Jorma J.},
  title={SUMOylation regulates the protein network and chromatin accessibility at glucocorticoid receptor-binding sites},
  year={2021},
  pages={1951-1971},
  language={eng},
  issn={1362-4962},
  volume={49},
  number={4},
  note={Gesehen am 19.07.2021},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkab032},
}
@article{UBHD-68644057,
  author={Pauli, Cornelius and Liu, Yi and Rohde, Christian and Cui, Chunhong and Fijalkowska, Daria and Gerloff, Dennis and Walter, Carolin and Krijgsveld, Jeroen and Dugas, Martin and Edemir, Bayram and Pabst, Caroline and M{\"u}ller, Lutz P. and Zhou, Fengbiao and M{\"u}ller-Tidow, Carsten},
  title={Site-specific methylation of 18S ribosomal RNA by SNORD42A is required for acute myeloid leukemia cell proliferation},
  year={2020},
  pages={2059-2070},
  language={eng},
  issn={1528-0020},
  volume={135},
  number={23},
  note={Gesehen am 07.10.2020},
  journal={Blood},
  doi={10.1182/blood.2019004121},
}
@article{UBHD-68558451,
  author={Plum, Thomas and Krijgsveld, Jeroen and Feyerabend, Thorsten B. and Rodewald, Hans-Reimer},
  title={Human mast cell proteome reveals unique lineage, putative functions, and structural basis for cell ablation},
  year={2020},
  pages={16 S.},
  language={eng},
  issn={1097-4180},
  volume={52},
  note={Gesehen am 26.03.2020},
  journal={Immunity},
  doi={10.1016/j.immuni.2020.01.012},
}
@article{UBHD-68679197,
  author={Polonio-Vallon, Tilman and Kirckpatrick, Joanna and Krijgsveld, Jeroen and Hofmann, Thomas G.},
  title={Src kinase modulates the apoptotic p53 pathway by altering HIPK2 localization},
  year={2014},
  pages={115-125},
  language={eng},
  issn={1551-4005},
  volume={13},
  number={1},
  note={Published online: 25 October 2013 ; Gesehen am 12.01.2021},
  journal={Cell cycle},
  doi={10.4161/cc.26857},
}
@article{UBHD-68579925,
  author={Raffel, Simon and Lutz, Christoph and Poschet, Gernot and Jensen, Patrizia and Fr{\"o}hling, Stefan and Wuchter, Patrick and Lichter, Peter and Hell, R{\"u}diger and Herrmann, Carl and Ho, Anthony Dick and Krijgsveld, Jeroen},
  title={Author Correction: BCAT1 restricts αKG levels in AML stem cells leading to IDHmut -like DNA hypermethylation},
  year={2018},
  pages={E28},
  language={eng},
  issn={1476-4687},
  volume={560},
  number={7718},
  note={Im Titel ist "mut" bei IDH hochgestellt ; Gesehen am 22.05.2020},
  journal={Nature},
  doi={10.1038/s41586-018-0403-9},
}
@article{UBHD-68280830,
  author={Raffel, Simon and Lutz, Christoph and Poschet, Gernot and Jensen, Patrizia and Fr{\"o}hling, Stefan and Wuchter, Patrick and Lichter, Peter and Hell, R{\"u}diger and Herrmann, Carl and Ho, Anthony Dick and Krijgsveld, Jeroen},
  title={BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation},
  year={2017},
  pages={384-388},
  language={eng},
  issn={1476-4687},
  volume={551},
  number={7680},
  note={Gesehen am 04.07.2018 ; Das Wort "mut" im Titel ist hochgestellt},
  journal={Nature},
  doi={10.1038/nature24294},
}
@article{UBHD-68676456,
  author={Raffel, Simon and Klimmeck, Daniel and Falcone, Mattia and Demir, Aykut and Pouya, Alireza and Zeisberger, Petra and Lutz, Christoph and Tinelli, Marco and Bischel, Oliver E. and Bullinger, Lars and Thiede, Christian and Fl{\"o}rcken, Anne and Westermann, J{\"o}rg and Ehninger, Gerhard and Ho, Anthony Dick and M{\"u}ller-Tidow, Carsten and Gu, Zuguang and Herrmann, Carl and Krijgsveld, Jeroen and Trumpp, Andreas and Hansson, Jenny},
  title={Quantitative proteomics reveals specific metabolic features of acute myeloid leukemia stem cells},
  year={2020},
  pages={1507-1519},
  language={eng},
  issn={1528-0020},
  volume={136},
  number={13},
  note={Gesehen am 04.01.2021},
  journal={Blood},
  doi={10.1182/blood.2019003654},
}
@article{UBHD-68684237,
  author={Rafiee, Mahmoud-Reza and Girardot, Charles and Sigismondo, Gianluca and Krijgsveld, Jeroen},
  title={Expanding the circuitry of pluripotency by selective isolation of chromatin-associated proteins},
  year={2016},
  pages={624-635},
  language={eng},
  issn={1097-4164},
  volume={64},
  number={3},
  note={Gesehen am 27.01.2021},
  journal={Molecular cell},
  doi={10.1016/j.molcel.2016.09.019},
}
@article{UBHD-68627846,
  author={Rafiee, Mahmoud-Reza and Sigismondo, Gianluca and Kalxdorf, Mathias and F{\"o}rster, Laura-Christin and Br{\"u}gger, Britta and Béthune, Julien and Krijgsveld, Jeroen},
  title={Protease-resistant streptavidin for interaction proteomics},
  year={2020},
  pages={12 S.},
  language={eng},
  issn={1744-4292},
  volume={16(2020},
  note={Gesehen am 17.8.2020},
  journal={Molecular systems biology},
  doi={10.15252/msb.20199370},
}
@article{UBHD-68315335,
  author={Rogell, Birgit and Fischer, Bernd and Krijgsveld, Jeroen and Castello, Alfredo and Hentze, Matthias W.},
  title={Specific RNP capture with antisense LNA/DNA mixmers},
  year={2017},
  pages={1290-1302},
  language={eng},
  issn={1469-9001},
  volume={23},
  number={8},
  note={Gesehen am 15.10.2018 ; Published in Advance May 5, 2017},
  journal={RNA},
  doi={10.1261/rna.060798.117},
}
@article{UBHD-69125907,
  author={Sch{\"a}fer, Miriam and Schneider, Martin and M{\"u}ller, Torsten and Franz, Natascha and Braspenning-Wesch, Ilona and Stephan, Sonja and Schmidt, Gabriele and Krijgsveld, Jeroen and Helm, Dominic and R{\"o}sl, Frank and Hasche, Daniel},
  title={Spatial tissue proteomics reveals distinct landscapes of heterogeneity in cutaneous papillomavirus-induced keratinocyte carcinomas},
  year={2023},
  pages={1-19},
  language={eng},
  issn={1096-9071},
  volume={95},
  note={Online ver{\"o}ffentlicht: 15. Juni 2023 ; Gesehen am 02.10.2023},
  journal={Journal of medical virology},
  doi={10.1002/jmv.28850},
}
@article{UBHD-68574295,
  author={Sieber, Jana and Hauer, Christian and Bhuvanagiri, Madhuri and Krijgsveld, Jeroen and Neu-Yilik, Gabriele and Hentze, Matthias W. and Kulozik, Andreas},
  title={Proteomic analysis reveals branch-specific regulation of the unfolded protein response by nonsense-mediated mRNA decay},
  year={2016},
  pages={1584-1597},
  language={eng},
  issn={1535-9484},
  volume={15},
  number={5},
  note={Gesehen am 07.05.2020},
  journal={Molecular & cellular proteomics},
  doi={10.1074/mcp.M115.054056},
}
@article{UBHD-68793222,
  author={Singhal, Mahak and Gengenbacher, Nicolas and Abdul Pari, Ashik Ahmed and Kamiyama, Miki and Hai, Ling and Kuhn, Bianca and Kallenberg, David M. and Kulkarni, Shubhada and Camilli, Carlotta and Preuss, Stephanie and Leuchs, Barbara and Mogler, Carolin and Espinet, Elisa and Besemfelder, Eva and Heide, Danijela and Heikenwalder, Mathias and Sprick, Martin and Trumpp, Andreas and Krijgsveld, Jeroen and Schlesner, Matthias and Hu, Junhao and Moss, Stephen E. and Greenwood, John and Augustin, Hellmut},
  title={Temporal multi-omics identifies LRG1 as a vascular niche instructor of metastasis},
  year={2021},
  pages={1-14},
  language={eng},
  issn={1946-6242},
  volume={13},
  note={Gesehen am 25.10.2021},
  journal={Science translational medicine},
  doi={10.1126/scitranslmed.abe6805},
}
@article{UBHD-68678699,
  author={Smith, Tom and Villanueva, Eneko and Queiroz, Rayner M. L. and Dawson, Charlotte S. and Elzek, Mohamed and Urdaneta Zurbarán, Erika Cristina and Willis, Anne E. and Beckmann, Benedikt M. and Krijgsveld, Jeroen and Lilley, Kathryn S.},
  title={Organic phase separation opens up new opportunities to interrogate the RNA-binding proteome},
  year={2020},
  pages={70-75},
  language={eng},
  issn={1879-0402},
  volume={54},
  note={Gesehen am 11.01.2021},
  journal={Current opinion in chemical biology},
  doi={10.1016/j.cbpa.2020.01.009},
}
@article{UBHD-68753043,
  author={Strzeszewska-Potyrała, Anna and Staniak, Karolina and Czarnecka-Herok, Joanna and Rafiee, Mahmoud-Reza and Herok, Marcin and Mosieniak, Grażyna and Krijgsveld, Jeroen and Sikora, Ewa},
  title={Chromatin-directed proteomics identifies ZNF84 as a p53-independent regulator of p21 in genotoxic stress response},
  year={2021},
  pages={1-24},
  language={eng},
  issn={2072-6694},
  volume={13},
  note={Gesehen am 28.06.2021},
  journal={Cancers},
  doi={10.3390/cancers13092115},
}
@article{UBHD-68384293,
  author={Trendel, Jakob and Hentze, Matthias W. and Krijgsveld, Jeroen},
  title={The human RNA-binding proteome and its dynamics during translational arrest},
  year={2019},
  pages={391-403},
  language={eng},
  issn={1097-4172},
  volume={176},
  number={1},
  note={Published: December 6, 2018 ; Gesehen am 03.05.2019},
  journal={Cell},
  doi={10.1016/j.cell.2018.11.004},
}
@article{UBHD-69197586,
  author={Trendel, Jakob and Boileau, Etienne and Jochem, Marco and Dieterich, Christoph and Krijgsveld, Jeroen},
  title={PEPseq quantifies transcriptome-wide changes in protein occupancy and reveals selective translational repression after translational stress},
  year={2023},
  pages={1-20},
  language={eng},
  issn={1362-4962},
  volume={51},
  number={14},
  note={Online ver{\"o}ffentlicht: 3. Juli 2023 ; Gesehen am 04.04.2024},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkad557},
}
@article{UBHD-68583849,
  author={Virant-Klun, Irma and Leicht, Stefan and Hughes, Christopher and Krijgsveld, Jeroen},
  title={Identification of maturation-specific proteins by single-cell proteomics of human oocytes},
  year={2016},
  pages={2616-2627},
  language={eng},
  issn={1535-9484},
  volume={15},
  number={8},
  note={Gesehen am 04.06.2020},
  journal={Molecular & cellular proteomics},
  doi={10.1074/mcp.M115.056887},
}
@article{UBHD-69041802,
  author={Vit, Gianmatteo and Hirth, Alexander and Neugebauer, Nicolas and Kraft, Bianca and Sigismondo, Gianluca and Cazzola, Anna and Teßmer, Claudia and Duro, Joana and Krijgsveld, Jeroen and Hofmann, Ilse and Berger, Michael and Kl{\"u}ter, Harald and Niehrs, Christof and Nilsson, Jakob and Kr{\"a}mer, Alwin},
  title={Human SLFN5 and its Xenopus Laevis ortholog regulate entry into mitosis and oocyte meiotic resumption},
  year={2022},
  pages={1-12},
  language={eng},
  issn={2058-7716},
  volume={8},
  number={Artikel-ID 484},
  note={Gesehen am 15.02.2023},
  journal={Cell death discovery},
  doi={10.1038/s41420-022-01274-0},
}
@article{UBHD-69275576,
  author={Weidenauer, Katharina and Schmidt, Christina and Rohde, Christian and Pauli, Cornelius and Blank, Maximilian Felix and Heid, Daniel and Waclawiczek, Alexander and Corbacioglu, Anika and G{\"o}llner, Stefanie and Lotze, Michelle and Vierbaum, Lisa and Renders, Simon and Krijgsveld, Jeroen and Raffel, Simon and Sauer, Tim and Trumpp, Andreas and Pabst, Caroline and M{\"u}ller-Tidow, Carsten and Janssen, Maike},
  title={The ribosomal protein S6 kinase alpha-1 (RPS6KA1) induces resistance to venetoclax/azacitidine in acute myeloid leukemia},
  year={2023},
  pages={1611-1625},
  language={eng},
  issn={1476-5551},
  volume={37},
  number={8 vom: Aug.},
  note={Gesehen am 21.11.2024},
  journal={Leukemia},
  doi={10.1038/s41375-023-01951-8},
}
@article{UBHD-69260741,
  author={Weigel, Bettina and Tegethoff, Jana F. and Grieder, Sarah D. and Lim, Bryce and Nagarajan, Bhuvaneswari and Liu, Yu-Chao and Truberg, Jule and Papageorgiou, Dimitris and Adrián Segarra, Juan Manuel and Schmidt, Laura K. and Kaspar, Janina and Poisel, Eric and Heinzelmann, Elisa and Saraswat, Manu and Christ, Marleen and Arnold, Christian and Ibarra, Ignacio L. and Campos, Joaquin and Krijgsveld, Jeroen and Monyer, Hannah and Zaugg, Judith B. and Acuna Goycolea, Claudio and Mall, Moritz},
  title={MYT1L haploinsufficiency in human neurons and mice causes autism-associated phenotypes that can be reversed by genetic and pharmacologic intervention},
  year={2023},
  pages={2122-2135},
  language={eng},
  issn={1476-5578},
  volume={28},
  number={5},
  note={Online ver{\"o}ffentlicht: 14. Februar 2023 ; Gesehen am 09.10.2024},
  journal={Molecular psychiatry},
  doi={10.1038/s41380-023-01959-7},
}
@article{UBHD-69354479,
  author={Wu, Wei and Krijgsveld, Jeroen},
  title={Secretome analysis},
  subtitle={reading cellular sign language to understand intercellular communication},
  year={2024},
  pages={1-18},
  language={eng},
  issn={1535-9484},
  volume={23},
  note={Online verf{\"u}gbar: 10. Dezember 2023, Artikelversion: 3. Januar 2024 ; Gesehen am 06.06.2025},
  journal={Molecular & cellular proteomics},
  doi={10.1016/j.mcpro.2023.100692},
}
@article{UBHD-68763233,
  author={Yokoyama, Hideki and Krijgsveld, Jeroen and Mattaj, Iain W.},
  title={CHD4 is a RanGTP-dependent MAP that stabilizes microtubules and regulates bipolar spindle formation},
  year={2013},
  pages={2443-2451},
  language={eng},
  issn={1879-0445},
  volume={23},
  number={24},
  note={Gesehen am 26.07.2021},
  journal={Current biology},
  doi={10.1016/j.cub.2013.09.062},
}
@article{UBHD-68571775,
  author={Zanconato, Francesca and Battilana, Giusy and Forcato, Mattia and Filippi, Letizia and Azzolin, Luca and Manfrin, Andrea and Quaranta, Erika and Biagio, Daniele Di and Sigismondo, Gianluca and Guzzardo, Vincenza and Lejeune, Pascale and Haendler, Bernard and Krijgsveld, Jeroen and Fassan, Matteo and Bicciato, Silvio and Cordenonsi, Michelangelo and Piccolo, Stefano},
  title={Transcriptional addiction in cancer cells is mediated by YAP/TAZ through BRD4},
  year={2018},
  pages={1599-1610},
  language={eng},
  issn={1546-170X},
  volume={24},
  number={10},
  note={Gesehen am 29.04.2020},
  journal={Nature medicine},
  doi={10.1038/s41591-018-0158-8},
}
@article{UBHD-69062803,
  author={Zhou, Fengbiao and Aroua, Nesrine and Liu, Yi and Rohde, Christian and Cheng, Jingdong and Wirth, Anna-Katharina and Fijalkowska, Daria and G{\"o}llner, Stefanie and Lotze, Michelle and Yun, Haiyang and Yu, Xiaobing and Pabst, Caroline and Sauer, Tim and Oellerich, Thomas and Serve, Hubert and R{\"o}llig, Christoph and Bornh{\"a}user, Martin and Thiede, Christian and Baldus, Claudia and Frye, Michaela and Raffel, Simon and Krijgsveld, Jeroen and Jeremias, Irmela and Beckmann, Roland and Trumpp, Andreas and M{\"u}ller-Tidow, Carsten},
  title={A dynamic rRNA ribomethylome drives stemness in acute myeloid leukemia},
  year={2023},
  pages={332-347},
  language={eng},
  issn={2159-8290},
  volume={13},
  number={2 vom: Feb.},
  note={Gesehen am 05.04.2023},
  journal={Cancer discovery},
  doi={10.1158/2159-8290.CD-22-0210},
}
@article{UBHD-68730360,
  author={Zowada, Martina and Tirier, Stephan Marius and Dieter, Sebastian M. and Krieger, Teresa G. and Oberlack, Ava and Chua, Robert Lorenz and Huerta, Mario and Ten, Foo Wei and Laaber, Karin and Park, Jeongbin and Jechow, Katharina and M{\"u}ller, Torsten and Kalxdorf, Mathias and Kriegsmann, Mark and Kriegsmann, Katharina and Herbst, Friederike and Krijgsveld, Jeroen and Schneider, Martin and Eils, Roland and Glimm, Hanno and Conrad, Christian and Ball, Claudia R.},
  title={Functional states in tumor-initiating cell differentiation in human colorectal cancer},
  year={2021},
  pages={1-32},
  language={eng},
  issn={2072-6694},
  volume={13},
  note={Gesehen am 30.07.2021},
  journal={Cancers},
  doi={10.3390/cancers13051097},
}