@article{UBHD-68400671, author={Bergmann, Frank T. and Olivier, Brett G. and Sahle, Sven and Waltemath, Dagmar}, title={Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)}, year={2018}, pages={97 S.}, language={eng}, issn={1613-4516}, volume={15(2018}, note={Gesehen am 24.06.2019}, journal={Journal of integrative bioinformatics}, doi={10.1515/jib-2017-0086}, } @article{UBHD-68916028, author={Hucka, Michael and Bergmann, Frank T. and Dr{\"a}ger, Andreas and Hoops, Stefan and Keating, Sarah M. and Le Novère, Nicolas and Olivier, Brett G. and Sahle, Sven and Schaff, James C. and Smith, Lucian P. and Waltemath, Dagmar and Wilkinson, Darren James}, title={The Systems Biology Markup Language (SBML): language specification for level 3 version 1 core}, year={2018}, pages={1-173}, language={eng}, issn={1613-4516}, volume={15}, note={Release 2, 28 December 2016 ; Special Issue: Standards in Systems Biology}, journal={Journal of integrative bioinformatics}, doi={10.1515/jib-2017-0080}, } @article{UBHD-68717827, author={Keating, Sarah M. and Waltemath, Dagmar and K{\"o}nig, Matthias and Zhang, Fengkai and Dr{\"a}ger, Andreas and Chaouiya, Claudine and Bergmann, Frank T. and Finney, Andrew and Gillespie, Colin S. and Helikar, Tomáš and Hoops, Stefan and Malik Sheriff, Rahuman S. and Moodie, Stuart L and Moraru, Ion I and Myers, Chris J and Naldi, Aurélien and Olivier, Brett G. and Sahle, Sven and Schaff, James C. and Smith, Lucian P. and Swat, Maciej J. and Thieffry, Denis and Watanabe, Leandro and Wilkinson, Darren James and Blinov, Michael L. and Begley, Kimberly and Faeder, James R. and Gómez, Harold F. and Hamm, Thomas M. and Inagaki, Yuichiro and Liebermeister, Wolfram and Lister, Allyson L and Lucio, Daniel and Mjolsness, Eric and Proctor, Carole J and Raman, Karthik and Rodriguez, Nicolas and Shaffer, Clifford A. and Shapiro, Bruce E. and Stelling, J{\"o}rg and Swainston, Neil and Tanimura, Naoki and Wagner, John and Meier-Schellersheim, Martin and Sauro, Herbert M. and Palsson, Bernhard O. and Bolouri, Hamid and Kitano, Hiroaki and Funahashi, Akira and Hermjakob, Henning and Doyle, John C. and Hucka, Michael}, title={SBML Level 3}, subtitle={an extensible format for the exchange and reuse of biological models}, year={2020}, pages={1-21}, language={eng}, issn={1744-4292}, volume={16}, note={Gesehen am 29.03.2021}, journal={Molecular systems biology}, doi={10.15252/msb.20199110}, } @article{UBHD-68585651, author={Mendoza, Sebastián N. and Olivier, Brett G. and Molenaar, Douwe and Teusink, Bas}, title={A systematic assessment of current genome-scale metabolic reconstruction tools}, year={2019}, pages={20 S.}, language={eng}, issn={1474-760X}, volume={20(2019) Artikel-Nummer 158}, number={20 Seiten}, note={Gesehen am 09.06.2020}, journal={Genome biology}, doi={10.1186/s13059-019-1769-1}, } @book{UBHD-68435888, author={Mendoza, Sebastián N. and Olivier, Brett G. and Molenaar, Douwe and Teusink, Bas}, title={A systematic assessment of current genome-scale metabolic reconstruction tools}, publisher={BioMed Central}, address={London}, year={2019}, pages={1 Online-Ressource}, language={eng}, note={In: Genome Biology, 20 (2019), Nr. 158. pp. 1-20. ISSN 1474-760X}, url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-269650}, library={UB}, } @article{UBHD-68659156, author={Neal, Maxwell Lewis and K{\"o}nig, Matthias and Nickerson, David and Scharm, Martin and Wolkenhauer, Olaf and Waltemath, Dagmar and Mısırlı, G{\"o}ksel and Kalbasi, Reza and Dr{\"a}ger, Andreas and Atalag, Koray and Chelliah, Vijayalakshmi and Cooling, Michael T. and Cook, Daniel L. and Crook, Sharon and de Alba, Miguel and Friedman, Samuel H. and Garny, Alan and Gennari, John H. and Gleeson, Padraig and Golebiewski, Martin and Hucka, Michael and Juty, Nick and Myers, Chris and Olivier, Brett G. and Sauro, Herbert M. and Snoep, Jacky L. and Touré, Vasundra and Wipat, Anil}, title={Harmonizing semantic annotations for computational models in biology}, year={2019}, pages={540-550}, language={eng}, issn={1477-4054}, volume={20}, number={2}, note={Advance access publication date: 21 November 2018 ; Gesehen am 10.11.2020}, journal={Briefings in bioinformatics}, doi={10.1093/bib/bby087}, } @article{UBHD-68556847, author={Olivier, Brett G. and Bergmann, Frank T.}, title={SBML level 3 package - flux balance constraints version 2}, year={2018}, pages={1-39}, language={eng}, issn={1613-4516}, volume={15}, note={Online erschienen: 09.03.2018 ; Gesehen am 24.03.2020}, journal={Journal of integrative bioinformatics}, doi={10.1515/jib-2017-0082}, }