@article{UBHD-68866506, author={Boileau, Etienne and Altm{\"u}ller, Janine and Naarmann-de Vries, Isabel S. and Dieterich, Christoph}, title={A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover}, year={2021}, pages={1-14}, language={eng}, issn={1477-4054}, volume={22}, note={Gesehen am 14.01.2022}, journal={Briefings in bioinformatics}, doi={10.1093/bib/bbab219}, } @article{UBHD-68801952, author={Boileau, Etienne and Doroudgar, Shirin and Riechert, Eva and J{\"u}rgensen, Lonny and Ho, Thanh Cao and Katus, Hugo and V{\"o}lkers, Mirko and Dieterich, Christoph}, title={Corrigendum: A multi-network comparative analysis of transcriptome and translatome identifies novel hub genes in cardiac remodeling}, year={2021}, pages={1 S.}, language={eng}, issn={1664-8021}, volume={12}, number={Artikel-ID 706542}, journal={Frontiers in genetics}, doi={10.3389/fgene.2021.706542}, } @article{UBHD-68966568, author={Boileau, Etienne and Li, Xue and Naarmann-de Vries, Isabel S. and Becker, Christian and Casper, Ramona and Altm{\"u}ller, Janine and Leuschner, Florian and Dieterich, Christoph}, title={Full-length spatial transcriptomics reveals the unexplored isoform diversity of the myocardium post-MI}, year={2022}, pages={1-11}, language={eng}, issn={1664-8021}, volume={13(2022) vom: Juli}, number={Artikel-ID 912572}, note={Gesehen am 22.09.2022}, journal={Frontiers in genetics}, doi={10.3389/fgene.2022.912572}, url={https://doi.org/10.3389/fgene.2022.912572}, library={UB}, } @article{UBHD-68665463, author={Boileau, Etienne and Doroudgar, Shirin and Riechert, Eva and J{\"u}rgensen, Lonny and Ho, Thanh Cao and Katus, Hugo and V{\"o}lkers, Mirko and Dieterich, Christoph}, title={A multi-network comparative analysis of transcriptome and translatome identifies novel hub genes in cardiac remodeling}, year={2020}, pages={11 S.}, language={eng}, issn={1664-8021}, volume={11(2020) Artikel-Nummer 583124}, number={11 Seiten}, note={Gesehen am 25.11.2020}, journal={Frontiers in genetics}, doi={10.3389/fgene.2020.583124}, url={https://doi.org/10.3389/fgene.2020.583124}, library={UB}, } @article{UBHD-68562436, author={Boileau, Etienne and Dieterich, Christoph}, title={RNA modification level estimation with pulseR}, year={2018}, pages={8 S.}, language={eng}, issn={2073-4425}, volume={9(2018}, note={Gesehen am 07.04.2020}, journal={Genes}, doi={10.3390/genes9120619}, } @article{UBHD-69359393, author={Boileau, Etienne and Wilhelmi, Harald and Busch, Anne and Cappannini, Andrea and Hildebrand, Andreas and Bujnicki, Janusz M and Dieterich, Christoph}, title={Sci-ModoM}, subtitle={a quantitative database of transcriptome-wide high-throughput RNA modification sites}, year={2025}, pages={D310–D317}, language={eng}, issn={1362-4962}, volume={volume 53}, number={issue D1 (6 January 2025)}, note={Online ver{\"o}ffentlicht: 5. November 2024 ; Gesehen am 25.06.2025}, journal={Nucleic acids research}, doi={10.1093/nar/gkae972}, } @article{UBHD-69007637, author={Britto-Borges, Thiago and Ludt, Annekathrin and Boileau, Etienne and Gjerga, Enio and Marini, Federico and Dieterich, Christoph}, title={Magnetique}, subtitle={an interactive web application to explore transcriptome signatures of heart failure}, year={2022}, pages={1-9}, language={eng}, issn={1479-5876}, volume={20}, number={Artikel-ID 513}, note={Gesehen am 18.01.2023}, journal={Journal of translational medicine}, doi={10.1186/s12967-022-03694-z}, url={https://doi.org/10.1186/s12967-022-03694-z}, library={UB}, } @article{UBHD-68428984, author={Doroudgar, Shirin and Sandmann, Christoph and Boileau, Etienne and Malone, Brandon and Riechert, Eva and Górska, Aga and Jakobi, Tobias and Sandmann, Clara and J{\"u}rgensen, Lonny and Kmietczyk, Vivien and Malovrh, Ellen and Burghaus-Zhang, Jana and Rettel, Mandy and Stein, Frank and Younesi, Fereshteh and Friedrich, Ulrike A. and Mauz, Victoria and Backs, Johannes and Kramer, G{\"u}nter and Katus, Hugo and Dieterich, Christoph and V{\"o}lkers, Mirko}, title={Monitoring cell-type-specific gene expression using ribosome profiling in vivo during cardiac hemodynamic stress}, year={2019}, pages={431-448}, language={eng}, issn={1524-4571}, volume={125}, number={4}, note={Gesehen am 11.09.2019}, journal={Circulation research}, doi={10.1161/CIRCRESAHA.119.314817}, } @article{UBHD-68902542, author={Froese, Natali and Cordero, Julio and Abouissa, Aya and Trogisch, Felix and Grein, Steve and Szaroszyk, Malgorzata and Wang, Yong and Gigina, Anna and Korf-Klingebiel, Mortimer and Bosnjak, Berislav and Davenport, Colin F. and Wiehlmann, Lutz and Geffers, Robert and Riechert, Eva and J{\"u}rgensen, Lonny and Boileau, Etienne and Lin, Yanzhu and Dieterich, Christoph and F{\"o}rster, Reinhold and Bauersachs, Johann and Ola, Roxana and Dobreva, Gergana and V{\"o}lkers, Mirko and Heineke, J{\"o}rg}, title={Analysis of myocardial cellular gene expression during pressure overload reveals matrix based functional intercellular communication}, year={2022}, pages={1-29}, language={eng}, issn={2589-0042}, volume={25}, note={Gesehen am 01.04.2022}, journal={iScience}, doi={10.1016/j.isci.2022.103965}, url={https://doi.org/10.1016/j.isci.2022.103965}, library={UB}, } @article{UBHD-69088601, author={Górska, Aga and Sandmann, Clara and Riechert, Eva and Sandmann, Christoph and Malovrh, Ellen and Varma, Eshita and Kmietczyk, Vivien and {\"O}lschl{\"a}ger, Julie and J{\"u}rgensen, Lonny and Kamuf-Schenk, Verena and Stroh, Claudia and Furkel, Jennifer and Konstandin, Mathias and Sticht, Carsten and Boileau, Etienne and Dieterich, Christoph and Frey, Norbert and Katus, Hugo and Doroudgar, Shirin and V{\"o}lkers, Mirko}, title={Muscle-specific Cand2 is translationally upregulated by mTORC1 and promotes adverse cardiac remodeling}, year={2021}, pages={1-19}, language={eng}, issn={1469-3178}, volume={22}, note={Gesehen am 22.06.2023}, journal={EMBO reports}, doi={10.15252/embr.202052170}, url={https://doi.org/10.15252/embr.202052170}, library={UB}, } @article{UBHD-68704934, author={M{\"u}ller, Torsten and Boileau, Etienne and Talyan, Sweta and Kehr, Dorothea and Varadi, Karl and Busch, Martin and Most, Patrick and Krijgsveld, Jeroen and Dieterich, Christoph}, title={Updated and enhanced pig cardiac transcriptome based on long-read RNA sequencing and proteomics}, year={2021}, pages={23-31}, language={eng}, issn={1095-8584}, volume={150}, note={Available online 10 October 2020 ; Gesehen am 01.03.2021}, journal={Journal of molecular and cellular cardiology}, doi={10.1016/j.yjmcc.2020.10.005}, } @article{UBHD-69271652, author={Sandmann, Christoph and Serafin, Adrian and Schwerdt, Ole Momme and Fischer, Johannes and Sicklinger, Florian and Younesi, Fereshteh and Byrne, Nikole J. and Meyer, S{\"o}ren and Malovrh, Ellen and Sandmann, Clara and J{\"u}rgensen, Lonny and Kamuf-Schenk, Verena and Stroh, Claudia and L{\"o}wenthal, Zoe and Finke, Daniel and Boileau, Etienne and Beisaw, Arica and Bugger, Heiko and Rettel, Mandy and Stein, Frank and Katus, Hugo and Jakobi, Tobias and Frey, Norbert and Leuschner, Florian and V{\"o}lkers, Mirko}, title={Transient inhibition of translation improves cardiac function after ischemia/reperfusion by attenuating the inflammatory response}, year={2024}, pages={1248-1267}, language={eng}, issn={1524-4539}, volume={150}, number={16}, note={Gesehen am 07.11.2024}, journal={Circulation}, doi={10.1161/CIRCULATIONAHA.123.067479}, } @article{UBHD-69197586, author={Trendel, Jakob and Boileau, Etienne and Jochem, Marco and Dieterich, Christoph and Krijgsveld, Jeroen}, title={PEPseq quantifies transcriptome-wide changes in protein occupancy and reveals selective translational repression after translational stress}, year={2023}, pages={1-20}, language={eng}, issn={1362-4962}, volume={51}, number={14}, note={Online ver{\"o}ffentlicht: 3. Juli 2023 ; Gesehen am 04.04.2024}, journal={Nucleic acids research}, doi={10.1093/nar/gkad557}, }