@article{UBHD-68772235,
  author={Afanasyeva, Elena and Gartlgruber, Moritz and Ryl, Tatsiana and Decaesteker, Bieke and Denecker, Geertrui and M{\"o}nke, Gregor and Toprak, Umut and Flórez, Andrés and Torkov, Alica and Dreidax, Daniel and Herrmann, Carl and Okonechnikov, Konstantin and Ek, Sara and Sharma, Ashwini Kumar and Sagulenko, Vitaliya and Speleman, Frank and Henrich, Kai-Oliver and Westermann, Frank},
  title={Kalirin-RAC controls nucleokinetic migration in ADRN-type neuroblastoma},
  year={2021},
  pages={1-25},
  language={eng},
  issn={2575-1077},
  volume={4},
  note={Gesehen am 19.08.2021},
  journal={Life science alliance},
  doi={10.26508/lsa.201900332},
}
@article{UBHD-69065196,
  author={Giesen, Nicola and Paramasivam, Nagarajan and Toprak, Umut and H{\"u}bschmann, Daniel and Xu, Jing and Uhrig, Sebastian and Samur, Mehmet and B{\"a}hr, Stella and Fr{\"o}hlich, Martina and Mughal, Sadaf Shabbir and Mai, Elias K. and Jauch, Anna and M{\"u}ller-Tidow, Carsten and Brors, Benedikt and Munshi, Nikhil C. and Goldschmidt, Hartmut and Weinhold, Niels and Schlesner, Matthias and Raab, Marc-Steffen},
  title={Comprehensive genomic analysis of refractory multiple myeloma reveals a complex mutational landscape associated with drug resistance and novel therapeutic vulnerabilities},
  year={2022},
  pages={1891-1901},
  language={eng},
  issn={1592-8721},
  volume={107},
  number={8},
  note={Gesehen am 13.04.2023},
  journal={Haematologica},
  doi={10.3324/haematol.2021.279360},
}
@article{UBHD-68873825,
  author={H{\"u}bschmann, Daniel and Kleinheinz, Kortine and Wagener, Rabea and Bernhart, Stephan H. and López, Cristina and Toprak, Umut and Sungalee, Stéphanie and Ishaque, Naveed and Kretzmer, Helene and Kreuz, Markus and Waszak, Sebastian Martin and Paramasivam, Nagarajan and Ammerpohl, Ole and Aukema, Sietse M. and Beekman, Renée and Bergmann, Anke K. and Bieg, Matthias and Binder, Hans and Borkhardt, Arndt and Borst, Christoph and Brors, Benedikt and Bruns, Philipp and Carrillo de Santa Pau, Enrique and Claviez, Alexander and Doose, Gero and Haake, Andrea and Karsch, Dennis and Haas, Siegfried and Hansmann, Martin-Leo and Hoell, Jessica I. and Hovestadt, Volker and Huang, Bingding and Hummel, Michael and J{\"a}ger-Schmidt, Christina and Kerssemakers, Jules and Korbel, Jan Oliver and Kube, Dieter and Lawerenz, Christian and Lenze, Dido and Martens, Joost H. A. and Ott, German and Radlwimmer, Bernhard and Reisinger, Eva and Richter, Julia and Rico, Daniel and Rosenstiel, Philip and Rosenwald, Andreas and Schillhabel, Markus and Stilgenbauer, Stephan and Stadler, Peter F. and Martín-Subero, José I. and Szczepanowski, Monika and Warsow, Gregor and Weniger, Marc A. and Zapatka, Marc and Valencia, Alfonso and Stunnenberg, Hendrik G. and Lichter, Peter and M{\"o}ller, Peter and Loeffler, Markus and Eils, Roland and Klapper, Wolfram and Hoffmann, Steve and Tr{\"u}mper, Lorenz and K{\"u}ppers, Ralf and Schlesner, Matthias and Siebert, Reiner},
  title={Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas},
  year={2021},
  pages={2002-2016},
  language={eng},
  issn={1476-5551},
  volume={35},
  number={7},
  note={Affiliations: Daniel H{\"u}bschmann, Kortine Kleinheinz, Rabea Wagener, Stephan H. Bernhart, Cristina López, Umut H. Toprak, Stephanie Sungalee, Naveed Ishaque, Helene Kretzmer, Markus Kreuz, Sebastian M. Waszak, Nagarajan Paramasivam, Ole Ammerpohl, Sietse M. Aukema, Renée Beekman, Anke K. Bergmann, Matthias Bieg, Hans Binder, Arndt Borkhardt, Christoph Borst, Benedikt Brors, Philipp Bruns, Enrique Carrillo de Santa Pau, Alexander Claviez, Gero Doose, Andrea Haake, Dennis Karsch, Siegfried Haas, Martin-Leo Hansmann, Jessica I. Hoell, Volker Hovestadt, Bingding Huang, Michael Hummel, Christina J{\"a}ger-Schmidt, Jules N.A. Kerssemakers, Jan O. Korbel, Dieter Kube, Chris Lawerenz, Dido Lenze, Joost H.A. Martens, German Ott, Bernhard Radlwimmer, Eva Reisinger, Julia Richter, Daniel Rico, Philip Rosenstiel, Andreas Rosenwald, Markus Schillhabel, Stephan Stilgenbauer, Peter F. Stadler, José I. Martín-Subero, Monika Szczepanowski, Gregor Warsow, Marc A. Weniger, Marc Zapatka, Alfonso Valencia, Hendrik G. Stunnenberg, Peter Lichter, Peter M{\"o}ller, Markus Loeffler, Roland Eils, Wolfram Klapper, Steve Hoffmann, Lorenz Tr{\"u}mper, ICGC MMML-Seq consortium, ICGC DE-Mining consortium, BLUEPRINT consortium, Ralf K{\"u}ppers, Matthias Schlesner, Reiner Siebert ; Gesehen am 03.02.2022},
  journal={Leukemia},
  doi={10.1038/s41375-021-01251-z},
}
@article{UBHD-68491160,
  author={Ishaque, Naveed and Abba, Mohammed L. and Patil, Nitin and Paramasivam, Nagarajan and H{\"u}bschmann, Daniel and Leupold, J{\"o}rg and Balasubramanian, Gnana Prakash and Kleinheinz, Kortine and Toprak, Umut and Hutter, Barbara and Benner, Axel and Kerssemakers, Jules and Marx, Alexander and Eils, J{\"u}rgen and Schlesner, Matthias and Eils, Roland and Brors, Benedikt and Allgayer, Heike},
  title={Whole genome sequencing puts forward hypotheses on metastasis evolution and therapy in colorectal cancer},
  year={2018},
  pages={14 S.},
  language={eng},
  issn={2041-1723},
  volume={9(2018) Artikel-Nummer 4782},
  number={14 Seiten},
  note={Gesehen am 19.02.2020},
  journal={Nature Communications},
  doi={10.1038/s41467-018-07041-z},
}
@article{UBHD-68717242,
  author={Jansky, Selina and Sharma, Ashwini Kumar and K{\"o}rber, Verena and Quintero, Andrés and Toprak, Umut and Wecht, Elisa M. and Gartlgruber, Moritz and Greco, Alessandro and Chomsky, Elad and Gr{\"u}newald, Thomas G. P. and Henrich, Kai-Oliver and Tanay, Amos and Herrmann, Carl and H{\"o}fer, Thomas and Westermann, Frank},
  title={Single-cell transcriptomic analyses provide insights into the developmental origins of neuroblastoma},
  year={2021},
  pages={683-693},
  language={eng},
  issn={1546-1718},
  volume={53},
  number={5},
  note={Das PDF enth{\"a}lt zus{\"a}tzlich einen Anhang von 19 Seiten ; Gesehen am 26.03.2021},
  journal={Nature genetics},
  doi={10.1038/s41588-021-00806-1},
}
@article{UBHD-69055063,
  author={López, Cristina and Schleußner, Nikolai and Bernhart, Stephan H. and Kleinheinz, Kortine and Sungalee, Stephanie and Sczakiel, Henrike L. and Kretzmer, Helene and Toprak, Umut and Glaser, Selina and Wagener, Rabea and Ammerpohl, Ole and Bens, Susanne and Giefing, Maciej and González Sánchez, Juan Carlos and Apic, Gordana and H{\"u}bschmann, Daniel and Janz, Martin and Kreuz, Markus and Mottok, Anja and Muller, Judith M. and Seufert, Julian and Hoffmann, Steve and Korbel, Jan Oliver and Russell, Robert B. and Schule, Roland and Trumper, Lorenz and Klapper, Wolfram and Radlwimmer, Bernhard and Lichter, Peter and Kuppers, Ralf and Schlesner, Matthias and Mathas, Stephan and Siebert, Reiner},
  title={Focal structural variants revealed by whole genome sequencing disrupt the histone demethylase KDM4C in B-cell lymphomas},
  year={2023},
  pages={543-554},
  language={eng},
  issn={1592-8721},
  volume={108},
  number={2 vom: Feb.},
  note={Vorver{\"o}ffentlicht: April 28, 2022 ; Gesehen am 23.03.2023},
  journal={Haematologica},
  doi={10.3324/haematol.2021.280005},
}
@article{UBHD-68480336,
  author={Paramasivam, Nagarajan and H{\"u}bschmann, Daniel and Toprak, Umut and Ishaque, Naveed and Neidert, Marian Christoph and Schrimpf, Daniel and Stichel, Damian and Reuss, David and Sievers, Philipp and Reinhardt, Annekathrin and Wefers, Annika K. and Jones, David T. W. and Gu, Zuguang and Werner, Johannes and Uhrig, Sebastian and Wirsching, Hans-Georg and Schick, Matthias and Bewerunge-Hudler, Melanie and Beck, Katja and Brehmer, Stefanie and Urbschat, Steffi and Seiz-Rosenhagen, Marcel and H{\"a}nggi, Daniel and Herold-Mende, Christel and Ketter, Ralf and Eils, Roland and Ram, Zvi and Pfister, Stefan and Wick, Wolfgang and Weller, Michael and Grossmann, Rachel and Deimling, Andreas von and Schlesner, Matthias and Sahm, Felix},
  title={Mutational patterns and regulatory networks in epigenetic subgroups of meningioma},
  year={2019},
  pages={295-308},
  language={eng},
  issn={1432-0533},
  volume={138},
  number={2},
  note={Received: 9 August 2018 ; Gesehen am 24.01.2020},
  journal={Acta neuropathologica},
  doi={10.1007/s00401-019-02008-w},
}
@article{UBHD-68936577,
  author={Radke, Josefine and Ishaque, Naveed and Koll, Randi and Gu, Zuguang and Schumann, Elisa and Sieverling, Lina and Uhrig, Sebastian and H{\"u}bschmann, Daniel and Toprak, Umut and López, Cristina and Hostench, Xavier Pastor and Borgoni, Simone and Juraeva, Dilafruz and Pritsch, Fabienne and Paramasivam, Nagarajan and Balasubramanian, Gnana Prakash and Schlesner, Matthias and Sahay, Shashwat and Weniger, Marc and Pehl, Debora and Radbruch, Helena and Osterloh, Anja and Korfel, Agnieszka and Misch, Martin and Onken, Julia and Faust, Katharina and Vajkoczy, Peter and Moskopp, Dag and Wang, Yawen and J{\"o}dicke, Andreas and Tr{\"u}mper, Lorenz and Anagnostopoulos, Ioannis and Lenze, Dido and K{\"u}ppers, Ralf and Hummel, Michael and Schmitt, Clemens Alexander and Wiestler, Otmar D. and Wolf, Stephan and Unterberg, Andreas and Eils, Roland and Herold-Mende, Christel and Brors, Benedikt and Siebert, Reiner and Wiemann, Stefan and Heppner, Frank L. and Lichter, Peter and Radlwimmer, Bernhard},
  title={The genomic and transcriptional landscape of primary central nervous system lymphoma},
  year={2022},
  pages={1-20},
  language={eng},
  issn={2041-1723},
  volume={13},
  number={Artikel-ID 2558},
  note={Gesehen am 01.07.2022},
  journal={Nature Communications},
  doi={10.1038/s41467-022-30050-y},
}
@article{UBHD-68573967,
  author={Shostak, Anton and Ruppert, Bianca and Ha, Nati and Bruns, Philipp and Toprak, Umut and Eils, Roland and Schlesner, Matthias and Diernfellner, Axel and Brunner, Michael},
  title={MYC/MIZ1-dependent gene repression inversely coordinates the circadian clock with cell cycle and proliferation},
  year={2016},
  pages={11 S.},
  language={eng},
  issn={2041-1723},
  volume={7(2016) Artikel-Nummer 11807},
  number={11 Seiten},
  note={Gesehen am 24.06.2020},
  journal={Nature Communications},
  doi={10.1038/ncomms11807},
}
@book{UBHD-68464776,
  author={Toprak, Umut},
  title={Integrative analysis of omics datasets},
  address={Heidelberg},
  year={2019},
  pages={1 Online-Ressource (320 Seiten)},
  language={eng},
  school={Dissertation,  Ruperto Carola University Heidelberg,  2019},
  doi={10.11588/heidok.00027429},
  url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-274291},
  library={UB},
}
@book{UBHD-68479394,
  author={Toprak, Umut},
  organization={Universit{\"a}t Heidelberg},
  title={Integrative analysis of omics datasets},
  address={Heidelberg},
  year={2019},
  pages={xiii, 305 Seiten},
  language={eng},
  school={Dissertation,  Ruperto Carola University Heidelberg,  2019},
  library={UB [Signatur: 2020 U 86]},
}
@article{UBHD-68571776,
  author={Wagener, Rabea and Toprak, Umut and Seufert, Julian and Schlesner, Matthias},
  title={Cryptic insertion of MYC exons 2 and 3 into the immunoglobulin heavy chain locus detected by whole genome sequencing in a case of “MYC-negative” Burkitt lymphoma},
  year={2020},
  pages={e202-e205},
  language={eng},
  issn={1592-8721},
  volume={105},
  number={4},
  note={Gesehen am 29.04.2020},
  journal={Haematologica},
  doi={10.3324/haematol.2018.208140},
}
@article{UBHD-69338348,
  author={Weichenhan, Dieter and Riedel, Anna and Sollier, Etienne and Toprak, Umut and Hey, Joschka and Breuer, Kersten and Wierzbińska, Justyna Anna and Touzart, Aurore and Lutsik, Pavlo and B{\"a}hr, Marion and {\"O}stlund, Anders and Nilsson, Tina and Jacobsson, Susanna and Edler, Marcel and Waraky, Ahmed and Behrens, Yvonne Lisa and G{\"o}hring, Gudrun and Schlegelberger, Brigitte and Steinek, Clemens and Harz, Hartmann and Leonhardt, Heinrich and Dolnik, Anna and Reinhardt, Dirk and Bullinger, Lars and Palmqvist, Lars and Lipka, Daniel and Plass, Christoph},
  title={Altered enhancer-promoter interaction leads to MNX1 expression in pediatric acute myeloid leukemia with t(7;12)(q36;p13)},
  year={2024},
  pages={5100-5111},
  language={eng},
  issn={2473-9537},
  volume={8},
  number={19},
  note={Online verf{\"u}gbar: 27. September 2024 ; Gesehen am 23.04.2025},
  journal={Blood advances},
  doi={10.1182/bloodadvances.2023012161},
}