@article{UBHD-68866506,
  author={Boileau, Etienne and Altm{\"u}ller, Janine and Naarmann-de Vries, Isabel S. and Dieterich, Christoph},
  title={A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover},
  year={2021},
  pages={1-14},
  language={eng},
  issn={1477-4054},
  volume={22},
  note={Gesehen am 14.01.2022},
  journal={Briefings in bioinformatics},
  doi={10.1093/bib/bbab219},
}
@article{UBHD-68966568,
  author={Boileau, Etienne and Li, Xue and Naarmann-de Vries, Isabel S. and Becker, Christian and Casper, Ramona and Altm{\"u}ller, Janine and Leuschner, Florian and Dieterich, Christoph},
  title={Full-length spatial transcriptomics reveals the unexplored isoform diversity of the myocardium post-MI},
  year={2022},
  pages={1-11},
  language={eng},
  issn={1664-8021},
  volume={13(2022) vom: Juli},
  number={Artikel-ID 912572},
  note={Gesehen am 22.09.2022},
  journal={Frontiers in genetics},
  doi={10.3389/fgene.2022.912572},
  url={https://doi.org/10.3389/fgene.2022.912572},
  library={UB},
}
@article{UBHD-69285261,
  author={Chan, Adrian and Naarmann-de Vries, Isabel S. and Scheitl, Carolin P. M. and H{\"o}bartner, Claudia and Dieterich, Christoph},
  title={Detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data},
  year={2024},
  pages={1-8},
  language={eng},
  issn={2041-1723},
  volume={15},
  number={Artikel-ID 3323},
  note={Im Titel ist die Ziffer "6" hochgestellt ; Gesehen am 18.12.2024},
  journal={Nature Communications},
  doi={10.1038/s41467-024-47661-2},
}
@article{UBHD-69115762,
  author={Gjerga, Enio and Naarmann-de Vries, Isabel S. and Dieterich, Christoph},
  title={Characterizing alternative splicing effects on protein interaction networks with LINDA},
  year={2023},
  pages={i458-i464},
  language={eng},
  issn={1367-4811 and 1460-2059},
  volume={39},
  number={Supplement_1},
  note={Ver{\"o}ffentlicht: 30. Juni 2023 ; Gesehen am 24.08.2023},
  journal={Bioinformatics},
  doi={10.1093/bioinformatics/btad224},
}
@article{UBHD-69185045,
  author={Naarmann-de Vries, Isabel S. and Gjerga, Enio and Gandor, Catharina L. A. and Dieterich, Christoph},
  title={Adaptive sampling for nanopore direct RNA-sequencing},
  year={2023},
  pages={1939-1949},
  language={eng},
  issn={1469-9001},
  volume={29},
  number={12},
  note={Gesehen am 23.02.2024},
  journal={RNA},
  doi={10.1261/rna.079727.123},
}
@article{UBHD-69147838,
  author={Naarmann-de Vries, Isabel S. and Zorbas, Christiane and Lemsara, Amina and Piechotta, Michael and Ernst, Felix Georg Maria and Wacheul, Ludivine and Lafontaine, Denis L. J. and Dieterich, Christoph},
  title={Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2},
  year={2023},
  pages={652-665},
  language={eng},
  issn={1555-8584},
  volume={20},
  number={1},
  note={Gesehen am 29.11.2023},
  journal={RNA biology},
  doi={10.1080/15476286.2023.2248752},
}
@article{UBHD-68938230,
  author={Naarmann-de Vries, Isabel S. and Eschenbach, Jessica and Dieterich, Christoph},
  title={Improved nanopore direct RNA sequencing of cardiac myocyte samples by selective mt-RNA depletion},
  year={2022},
  pages={175-186},
  language={eng},
  issn={1095-8584},
  volume={163},
  note={Available online 3 November 2021 ; Gesehen am 06.07.2022},
  journal={Journal of molecular and cellular cardiology},
  doi={10.1016/j.yjmcc.2021.10.010},
}
@article{UBHD-68756872,
  author={Naarmann-de Vries, Isabel S. and Senatore, Roberta and Moritz, Bodo and Marx, Gernot and Urlaub, Henning and Niessing, Dierk and Ostareck, Dirk H. and Ostareck-Lederer, Antje},
  title={Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis},
  year={2021},
  pages={3507-3523},
  language={eng},
  issn={1362-4962},
  volume={49},
  number={6 vom: 6. Apr.},
  note={Gesehen am 07.07.2021},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkab116},
}
@article{UBHD-68965646,
  author={Naarmann-de Vries, Isabel S. and Eschenbach, Jessica and Schudy, Sarah and Meder, Benjamin and Dieterich, Christoph},
  title={Targeted analysis of circRNA expression in patient samples by lexo-circSeq},
  year={2022},
  pages={1-10},
  language={eng},
  issn={2296-889X},
  volume={9(2022) vom: Aug.},
  number={Artikel-ID 875805},
  note={Gesehen am 20.09.2022},
  journal={Frontiers in molecular biosciences},
  doi={10.3389/fmolb.2022.875805},
  url={https://doi.org/10.3389/fmolb.2022.875805},
  library={UB},
}
@article{UBHD-68934365,
  author={Piechotta, Michael and Naarmann-de Vries, Isabel S. and Wang, Qi and Altm{\"u}ller, Janine and Dieterich, Christoph},
  title={RNA modification mapping with JACUSA2},
  year={2022},
  pages={1-11},
  language={eng},
  issn={1474-760X},
  volume={23},
  number={Artikel-ID 115},
  note={Gesehen am 24.06.2022},
  journal={Genome biology},
  doi={10.1186/s13059-022-02676-0},
  url={https://doi.org/10.1186/s13059-022-02676-0},
  library={UB},
}
@article{UBHD-69307507,
  author={Rabolli, Charles and Naarmann-de Vries, Isabel S. and Makarewich, Catherine A. and Baskin, Kedryn K. and Dieterich, Christoph and Accornero, Federica},
  title={Nanopore detection of METTL3-dependent m6A-modified mRNA reveals a new mechanism regulating cardiomyocyte mitochondrial metabolism},
  year={2024},
  pages={1319-1322},
  language={eng},
  issn={1524-4539},
  volume={149},
  number={16 vom: Apr.},
  note={Zuerst ver{\"o}ffentlicht: 15. April 2024 ; Gesehen am 24.02.2025},
  journal={Circulation},
  doi={10.1161/CIRCULATIONAHA.123.066473},
}
@article{UBHD-69277295,
  author={Rahn, Kerstin and Abdallah, Ali T. and Gan, Lin and Herbrich, Shelley and Sonntag, Roland and Benitez, Oscar and Malaney, Prerna and Zhang, Xiaorui and Rodriguez, Ashely G. and Brottem, Jared and Marx, Gernot and Bruemmendorf, Tim H. and Ostareck, Dirk H. and Ostareck-Lederer, Antje and Crysandt, Martina and Post, Sean M. and Naarmann-de Vries, Isabel S.},
  title={Insight into the mechanism of AML del(9q) progression},
  subtitle={hnRNP K targets the myeloid master regulators CEBPA (C/EBPα) and SPI1 (PU.1)},
  year={2024},
  pages={1-13},
  language={eng},
  issn={1876-4320},
  volume={1867},
  note={Gesehen am 27.11.2024},
  journal={Biochimica et biophysica acta},
  doi={10.1016/j.bbagrm.2023.195004},
}
@article{UBHD-69146467,
  author={Sun, Yu and Piechotta, Michael and Naarmann-de Vries, Isabel S. and Dieterich, Christoph and Ehrenhofer-Murray, Ann E},
  title={Detection of queuosine and queuosine precursors in tRNAs by direct RNA sequencing},
  year={2023},
  pages={11197-11212},
  language={eng},
  issn={1362-4962},
  volume={51},
  number={20 vom: Nov.},
  note={Online vorab ver{\"o}ffentlicht: 9. Oktober 2023 ; Gesehen am 27.11.2023},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkad826},
}
@article{UBHD-68770491,
  author={Vries, Sebastian de and Benes, Vladimir and Naarmann-de Vries, Isabel S. and R{\"u}cklé, Cornelia and Zarnack, Katharina and Marx, Gernot and Ostareck, Dirk H. and Ostareck-Lederer, Antje},
  title={P23 acts as functional RBP in the macrophage inflammation response},
  year={2021},
  pages={1-16},
  language={eng},
  issn={2296-889X},
  volume={8},
  number={Artikel-ID 625608},
  note={Gesehen am 13.08.2021},
  journal={Frontiers in molecular biosciences},
  doi={10.3389/fmolb.2021.625608},
}
@article{UBHD-69353663,
  author={Zhou, You and Ćorović, Miona and Hoch-Kraft, Peter and Meiser, Nathalie and Mesitov, Mikhail and K{\"o}rtel, Nadine and Back, Hannah and Naarmann-de Vries, Isabel S. and Katti, Kritika and Obrdlík, Aleš and Busch, Anke and Dieterich, Christoph and Vaňáčová, Štěpánka and Hengesbach, Martin and Zarnack, Kathi and K{\"o}nig, Julian},
  title={m6A sites in the coding region trigger translation-dependent mRNA decay},
  year={2024},
  pages={4576-4593.e12},
  language={eng},
  issn={1097-4164},
  volume={84},
  number={23 vom: Dez.},
  note={Online verf{\"u}gbar: 21. November 2024, Artikelversion: 5. Dezember 2024 ; Gesehen am 04.06.2025},
  journal={Molecular cell},
  doi={10.1016/j.molcel.2024.10.033},
}