@article{UBHD-68928298,
  author={Bauersachs, Hanke and Bengtson, C. Peter and Weiss, Ursula and Hellwig, Andrea and García-Vilela, Celia and Zaremba, Bastienne and Kaessmann, Henrik and Pruunsild, Priit and Bading, Hilmar},
  title={N-methyl-d-aspartate receptor-mediated preconditioning mitigates excitotoxicity in human induced pluripotent stem cell-derived brain organoids},
  year={2022},
  pages={83-97},
  language={eng},
  issn={1873-7544},
  volume={484},
  note={Gesehen am 07.06.2022},
  journal={Neuroscience},
  doi={10.1016/j.neuroscience.2021.12.026},
}
@article{UBHD-68666323,
  author={Cardoso-Moreira, Margarida and Sarropoulos, Ioannis and Velten, Britta and Mort, Matthew and Cooper, David N. and Huber, Wolfgang and Kaessmann, Henrik},
  title={Developmental gene expression differences between humans and mammalian models},
  year={2020},
  pages={17 S.},
  language={eng},
  issn={2211-1247},
  volume={33(2020},
  note={Gesehen am 27.11.2020},
  journal={Cell reports},
  doi={10.1016/j.celrep.2020.108308},
}
@article{UBHD-68433355,
  author={Cardoso-Moreira, Margarida and Halbert, Jean and Valloton, Delphine and Velten, Britta and Chen, Chunyan and Shao, Yi and Liechti, Angélica and Ascenção, Kelly and Rummel, Coralie and Ovchinnikova, Svetlana and Mazin, Pavel V. and Xenarios, Ioannis and Harshman, Keith and Mort, Matthew and Cooper, David N. and Sandi, Carmen and Soares, Michael J. and Ferreira, Paula G. and Afonso, Sandra and Carneiro, Miguel and Turner, James M. A. and VandeBerg, John L. and Fallahshahroudi, Amir and Jensen, Per and Behr, R{\"u}diger and Lisgo, Steven and Lindsay, Susan and Khaitovich, Philipp and Huber, Wolfgang and Baker, Julie and Anders, Simon and Zhang, Yong E. and Kaessmann, Henrik},
  title={Gene expression across mammalian organ development},
  year={2019},
  pages={505-509},
  language={eng},
  issn={1476-4687},
  volume={571},
  number={7766},
  note={Gesehen am 26.09.2019},
  journal={Nature},
  doi={10.1038/s41586-019-1338-5},
}
@article{UBHD-68571641,
  author={Carelli, Francesco Nicola and Hayakawa, Takashi and Go, Yasuhiro and Imai, Hiroo and Warnefors, Maria and Kaessmann, Henrik},
  title={The life history of retrocopies illuminates the evolution of new mammalian genes},
  year={2016},
  pages={301-314},
  language={eng},
  issn={1549-5469},
  volume={26},
  number={3},
  note={Gesehen am 29.04.2020},
  journal={Genome research},
  doi={10.1101/gr.198473.115},
}
@article{UBHD-68374143,
  author={Carelli, Francesco N. and Kaessmann, Henrik},
  title={Repurposing of promoters and enhancers during mammalian evolution},
  year={2018},
  pages={11 S.},
  language={eng},
  issn={2041-1723},
  volume={9(2018) Artikel-Nummer 4066},
  number={11 Seiten},
  note={Gesehen am 29.03.2019},
  journal={Nature Communications},
  doi={10.1038/s41467-018-06544-z},
}
@article{UBHD-68330282,
  author={Cortez, Diego and Marin, Ray and Toledo-Flores, Deborah and Froidevaux, Laure and Liechti, Angélica and Waters, Paul D. and Grutzner, Frank and Kaessmann, Henrik},
  title={Origins and functional evolution of Y chromosomes across mammals},
  year={2014},
  pages={488-493},
  language={eng},
  issn={1476-4687},
  volume={508},
  number={7497},
  note={Gesehen am 20.11.2018},
  journal={Nature},
  doi={10.1038/nature13151},
}
@article{UBHD-68861516,
  author={Gruhl, Franziska and Janich, Peggy and Kaessmann, Henrik and Gatfield, David},
  title={Circular RNA repertoires are associated with evolutionarily young transposable elements},
  year={2021},
  pages={1-33},
  language={eng},
  issn={2050-084X},
  volume={10},
  number={Artikel-ID e67991},
  note={Gesehen am 24.12.2021},
  journal={eLife},
  doi={10.7554/eLife.67991},
}
@article{UBHD-68296141,
  author={Guschanski, Katerina and Warnefors, Maria and Kaessmann, Henrik},
  title={The evolution of duplicate gene expression in mammalian organs},
  year={2017},
  pages={1461-1474},
  language={eng},
  issn={1549-5469},
  volume={27},
  note={Gesehen am 16.08.2018},
  journal={Genome research},
  doi={10.1101/gr.215566.116},
}
@article{UBHD-69150685,
  author={Lamanna, Francesco and Hervas Sotomayor, Francisca and Oel, A. Phillip and Jandzik, David and Sobrido-Cameán, Daniel and Santos-Durán, Gabriel N. and Martik, Megan L. and Stundl, Jan and Green, Stephen A. and Br{\"u}ning, Thoomke and M{\"o}ßinger, Katharina and Schmidt, Julia and Schneider, Céline and Sepp, Mari and Murat, Florent and Smith, Jeramiah and Bronner, Marianne E. and Rodicio, María Celina and Barreiro-Iglesias, Antón and Medeiros, Daniel M. and Arendt, Detlev and Kaessmann, Henrik},
  title={A lamprey neural cell type atlas illuminates the origins of the vertebrate brain},
  year={2023},
  pages={1714-1728},
  language={eng},
  issn={2397-334X},
  volume={7},
  number={10},
  note={Online ver{\"o}ffentlicht: 14. September 2023 ; gez{\"a}hlte Seiten (S. 1714-1728) sowie 17 ungez{\"a}hlte Seiten mit Illustrationen ; Gesehen am 07.12.2023},
  journal={Nature ecology & evolution},
  doi={10.1038/s41559-023-02170-1},
}
@article{UBHD-69256658,
  author={Leushkin, Evgeny and Kaessmann, Henrik},
  title={Identification of old coding regions disproves the hominoid de novo status of genes},
  year={2024},
  pages={1-5},
  language={eng},
  issn={2397-334X},
  note={Gesehen am 26.09.2024},
  journal={Nature ecology & evolution},
  doi={10.1038/s41559-024-02513-6},
}
@article{UBHD-68311179,
  author={Marin, Ray and Lamanna, Francesco and Trefzer, Timo and Conrad, Christian and Kaessmann, Henrik},
  title={Convergent origination of a Drosophila-like dosage compensation mechanism in a reptile lineage},
  year={2017},
  pages={1974-1987},
  language={eng},
  issn={1549-5469},
  volume={27},
  number={12},
  note={Gesehen am 02.10.2018},
  journal={Genome research},
  doi={10.1101/gr.223727.117},
}
@article{UBHD-68985063,
  author={M{\"u}ller, Marion and Eghbalian, Rose and Boeckel, Jes-Niels and Frese, Karen S. and Haas, Jan and Kayvanpour, Elham and Sedaghat-Hamedani, Farbod and Lackner, Maximilian K. and Tugrul, Oguz Firat and Ruppert, Thomas and Tappu, Rewati and Martins Bordalo, Diana and Kneuer, Jasmin M. and Piekarek, Annika and Herch, Sabine and Schudy, Sarah and Keller, Andreas and Grammes, Nadja and Bischof, Cornelius and Klinke, Anna and Cardoso-Moreira, Margarida and Kaessmann, Henrik and Katus, Hugo and Frey, Norbert and Steinmetz, Lars M. and Meder, Benjamin},
  title={NIMA-related kinase 9 regulates the phosphorylation of the essential myosin light chain in the heart},
  year={2022},
  pages={1-18},
  language={eng},
  issn={2041-1723},
  volume={13},
  number={Artikel-ID 6209},
  note={Gesehen am 14.11.2022},
  journal={Nature Communications},
  doi={10.1038/s41467-022-33658-2},
  url={https://doi.org/10.1038/s41467-022-33658-2},
  library={UB},
}
@article{UBHD-69000885,
  author={Murat, Florent and Mbengue, Noe and Winge, Sofia Boeg and Trefzer, Timo and Leushkin, Evgeny and Sepp, Mari and Cardoso-Moreira, Margarida and Schmidt, Julia and Schneider, Céline and M{\"o}ßinger, Katharina and Br{\"u}ning, Thoomke and Lamanna, Francesco and Belles, Meritxell Riera and Conrad, Christian and Kondova, Ivanela and Bontrop, Ronald and Behr, R{\"u}diger and Khaitovich, Philipp and P{\"a}{\"a}bo, Svante and Marques-Bonet, Tomas and Gr{\"u}tzner, Frank and Almstrup, Kristian and Schierup, Mikkel Heide and Kaessmann, Henrik},
  title={The molecular evolution of spermatogenesis across mammals},
  year={2022},
  pages={308-316},
  language={eng},
  issn={1476-4687},
  volume={613},
  number={7943},
  note={Gesehen am 02.01.2023},
  journal={Nature},
  doi={10.1038/s41586-022-05547-7},
}
@article{UBHD-69142675,
  author={Okonechnikov, Konstantin and Joshi, Piyush and Sepp, Mari and Leiss, Kevin and Sarropoulos, Ioannis and Murat, Florent and Sill, Martin and Beck, Pengbo and Chan, Kenneth Chun-Ho and Korshunov, Andrey and Sahm, Felix and Deng, Maximilian and Sturm, Dominik and DeSisto, John and Donson, Andrew M and Foreman, Nicholas K and Green, Adam L and Robinson, Giles and Orr, Brent A and Gao, Qingsong and Darrow, Emily and Hadley, Jennifer L and Northcott, Paul A and Gojo, Johannes and Kawauchi, Daisuke and Hovestadt, Volker and Filbin, Mariella G and Deimling, Andreas von and Zuckermann, Marc and Pajtler, Kristian Wilfried and Kool, Marcel and Jones, David T. W. and J{\"a}ger, Natalie and Kutscher, Lena M and Kaessmann, Henrik and Pfister, Stefan},
  title={Mapping pediatric brain tumors to their origins in the developing cerebellum},
  year={2023},
  pages={1895-1909},
  language={eng},
  issn={1523-5866},
  volume={25},
  number={10 vom: Okt.},
  note={Online ver{\"o}ffentlicht: 03. August 2023 ; Gesehen am 14.11.2023},
  journal={Neuro-Oncology},
  doi={10.1093/neuonc/noad124},
}
@article{UBHD-69344141,
  author={Okonechnikov, Konstantin and Joshi, Piyush and K{\"o}rber, Verena and Rademacher, Anne and Bortolomeazzi, Michele and Mallm, Jan-Philipp and Vaillant, Jan and da Silva, Patricia Benites Goncalves and Statz, Britta and Sepp, Mari and Sarropoulos, Ioannis and Yamada, Tetsuya and Wittmann, Andrea and Schramm, Kathrin and Blattner-Johnson, Mirjam and Fiesel, Petra and Jones, Barbara Christine and J{\"a}ger, Natalie and Milde, Till and Pajtler, Kristian Wilfried and Tilburg, Cornelis M. van and Witt, Olaf and Bochennek, Konrad and Weber, Katharina Johanna and Nonnenmacher, Lisa and Reimann, Christian and Ghasemi, David R. and Sch{\"u}ller, Ulrich and Mynarek, Martin and Rutkowski, Stefan and Jones, David T. W. and Korshunov, Andrey and Rippe, Karsten and Westermann, Frank and Thongjuea, Supat and H{\"o}fer, Thomas and Kaessmann, Henrik and Kutscher, Lena and Pfister, Stefan},
  title={Oncogene aberrations drive medulloblastoma progression, not initiation},
  year={2025},
  pages={1062-1072},
  language={eng},
  issn={1476-4687},
  volume={642},
  number={8069},
  note={Gesehen am 13.05.2025},
  journal={Nature},
  doi={10.1038/s41586-025-08973-5},
}
@article{UBHD-69147177,
  author={Rodríguez Montes, Leticia and Ovchinnikova, Svetlana and Yuan, Xuefei and Studer, Tania and Sarropoulos, Ioannis and Anders, Simon and Kaessmann, Henrik and Cardoso-Moreira, Margarida},
  title={Sex-biased gene expression across mammalian organ development and evolution},
  year={2023},
  pages={1-13},
  language={eng},
  issn={1095-9203},
  volume={382},
  number={Artikel-ID 6670},
  note={Gesehen am 28.11.2023},
  journal={Science},
  doi={10.1126/science.adf1046},
}
@article{UBHD-68492062,
  author={Sarropoulos, Ioannis and Marin, Ray and Cardoso-Moreira, Margarida and Kaessmann, Henrik},
  title={Developmental dynamics of lncRNAs across mammalian organs and species},
  year={2019},
  pages={510-514},
  language={eng},
  issn={1476-4687},
  volume={571},
  number={7766},
  note={Gesehen am 21.02.2020 ; Received: 21 October 2018},
  journal={Nature},
  doi={10.1038/s41586-019-1341-x},
}
@article{UBHD-68765192,
  author={Sarropoulos, Ioannis and Sepp, Mari and Fr{\"o}mel, Robert and Leiss, Kevin and Trost, Nils and Leushkin, Evgeny and Okonechnikov, Konstantin and Joshi, Piyush and Giere, Peter and Kutscher, Lena M. and Cardoso-Moreira, Margarida and Pfister, Stefan and Kaessmann, Henrik},
  title={Developmental and evolutionary dynamics of cis-regulatory elements in mouse cerebellar cells},
  year={2021},
  pages={1-11},
  language={eng},
  issn={1095-9203},
  volume={373},
  note={Das PDF enth{\"a}lt zus{\"a}tzlich eine Seite mit einer Zusammenfassung ; Gesehen am 30.07.2021},
  journal={Science},
  doi={10.1126/science.abg4696},
}
@book{UBHD-68819281,
  author={Sepp, Mari and Leiss, Kevin and Sarropoulos, Ioannis and Murat, Florent and Okonechnikov, Konstantin and Joshi, Piyush and Leushkin, Evgeny and Mbengue, Noe and Schneider, Céline and Schmidt, Julia and Trost, Nils and Sp{\"a}nig, Lisa and Giere, Peter and Khaitovich, Philipp and Lisgo, Steven and Palkovits, Miklós and Kutscher, Lena and Anders, Simon and Cardoso-Moreira, Margarida and Pfister, Stefan and Kaessmann, Henrik},
  title={Cellular development and evolution of the mammalian cerebellum [research data]},
  publisher={Universit{\"a}t},
  address={Heidelberg},
  year={2021},
  pages={1 Online-Ressource (87 Files)},
  language={eng},
  note={Grant information: European Research Council: 615253, OntoTransEvol, European Research Council: 819894, BRAIN-MATCH, Brain Research Program: 2017-1.2.1-NKP-2017-00002, Cancer Research UK: FC011171, UK Medical Research Council: FC011171, Wellcome Trust: FC011171 ; Kind of data: Single nucleus transcripomes ; Gesehen am 13.12.2021},
  doi={10.11588/data/QDOC4E},
  url={https://heidata.uni-heidelberg.de/dataset.xhtml?persistentId=doi:10.11588/data/QDOC4E},
  library={UB},
}
@article{UBHD-69180418,
  author={Sepp, Mari and Leiss, Kevin and Murat, Florent and Okonechnikov, Konstantin and Joshi, Piyush and Leushkin, Evgeny and Sp{\"a}nig, Lisa and Mbengue, Noe and Schneider, Céline and Schmidt, Julia and Trost, Nils and Schauer, Maria and Khaitovich, Philipp and Lisgo, Steven and Palkovits, Miklós and Giere, Peter and Kutscher, Lena and Anders, Simon and Cardoso-Moreira, Margarida and Sarropoulos, Ioannis and Pfister, Stefan and Kaessmann, Henrik},
  title={Cellular development and evolution of the mammalian cerebellum},
  year={2024},
  pages={788-796},
  language={eng},
  issn={1476-4687},
  volume={625},
  number={7996},
  note={Online ver{\"o}ffentlicht 29. November 2023 ; Gesehen am 08.02.2024},
  journal={Nature},
  doi={10.1038/s41586-023-06884-x},
}
@article{UBHD-68467586,
  author={Smith, Jeramiah and Timoshevskaya, Nataliya and Ye, Chengxi and Holt, Carson and Keinath, Melissa C. and Parker, Hugo J. and Cook, Malcolm E. and Hess, Jon E. and Narum, Shawn R. and Lamanna, Francesco and Kaessmann, Henrik and Timoshevskiy, Vladimir A. and Waterbury, Courtney K. M. and Saraceno, Cody and Wiedemann, Leanne M. and Robb, Sofia M. C. and Baker, Carl and Eichler, Evan E. and Hockman, Dorit and Sauka-Spengler, Tatjana and Yandell, Mark and Krumlauf, Robb and Elgar, Greg and Amemiya, Chris T.},
  title={The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution},
  year={2018},
  pages={270-277},
  language={eng},
  issn={1546-1718},
  volume={50},
  number={2},
  note={Gesehen am 13.12.2019},
  journal={Nature genetics},
  doi={10.1038/s41588-017-0036-1},
}
@article{UBHD-68446736,
  author={Sobrido-Cameán, Daniel and Lamanna, Francesco and Kaessmann, Henrik},
  title={Galanin in an Agnathan},
  subtitle={precursor identification and localisation of expression in the brain of the sea lamprey Petromyzon marinus},
  year={2019},
  pages={11 S.},
  language={eng},
  issn={1662-5129},
  volume={13(2019) Artikel-Nummer 83},
  number={11 Seiten},
  note={Gesehen am 28.10.2019},
  journal={Frontiers in neuroanatomy},
  doi={10.3389/fnana.2019.00083},
}
@article{UBHD-69115790,
  author={Trost, Nils and Mbengue, Noe and Kaessmann, Henrik},
  title={The molecular evolution of mammalian spermatogenesis},
  year={2023},
  pages={1-8},
  language={eng},
  issn={2667-2901},
  volume={175(2023) vom: Sept.},
  number={Artikel-ID 203865},
  note={Online verf{\"u}gbar: 17. Juni 2023, Artikelversion: 20. Juni 2023 ; Gesehen am 24.08.2023},
  journal={Cells & development},
  doi={10.1016/j.cdev.2023.203865},
}
@article{UBHD-68667174,
  author={Ullate-Agote, Asier and Burgelin, Ingrid and Debry, Adrien and Langrez, Carine and Montange, Florent and Peraldi, Rodrigue and Daraspe, Jean and Kaessmann, Henrik and Milinkovitch, Michel C. and Tzika, Athanasia C.},
  title={Genome mapping of a LYST mutation in corn snakes indicates that vertebrate chromatophore vesicles are lysosome-related organelles},
  year={2020},
  pages={26307-26317},
  language={eng},
  issn={1091-6490},
  volume={117},
  number={42},
  note={Gesehen am 01.12.2020},
  journal={Proceedings of the National Academy of Sciences of the United States of America},
  doi={10.1073/pnas.2003724117},
}
@article{UBHD-68660324,
  author={Wang, Zhongyi and Leushkin, Evgeny and Liechti, Angélica and Ovchinnikova, Svetlana and M{\"o}ßinger, Katharina and Br{\"u}ning, Thoomke and Rummel, Coralie and Grutzner, Frank and Cardoso-Moreira, Margarida and Janich, Peggy and Gatfield, David and Diagouraga, Boubou and de Massy, Bernard and Gill, Mark E. and Peters, Antoine H. F. M. and Anders, Simon and Kaessmann, Henrik},
  title={Transcriptome and translatome co-evolution in mammals},
  year={2020},
  pages={642-647},
  language={eng},
  issn={1476-4687},
  volume={588},
  number={7839},
  note={Das PDF enth{\"a}lt einen Anhang von 22 Seiten ; Gesehen am 08.01.2021},
  journal={Nature},
  doi={10.1038/s41586-020-2899-z},
}
@article{UBHD-68333401,
  author={Warnefors, Maria and M{\"o}ßinger, Katharina and Studer, Tania and Kaessmann, Henrik},
  title={Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation},
  year={2017},
  pages={1961-1973},
  language={eng},
  issn={1549-5469},
  volume={27},
  number={12},
  note={Gesehen am 28.11.2018},
  journal={Genome research},
  doi={10.1101/gr.225391.117},
}
@book{UBHD-69210409,
  author={Zaremba, Bastienne and Fallahshahroudi, Amir and Schneider, Céline and Schmidt, Julia and Sarropoulos, Ioannis and Leushkin, Evgeny and Berki, Bianka and Van Poucke, Enya and Jensen, Per and Senovilla-Ganzo, Rodrigo and Hervas Sotomayor, Francisca and Trost, Nils and Lamanna, Francesco and Sepp, Mari and García-Moreno, Fernando and Kaessmann, Henrik},
  title={Developmental origins and evolution of pallial cell types and structures in birds - data},
  publisher={Universit{\"a}t},
  address={Heidelberg},
  year={2024},
  pages={1 Online-Ressource (56 Files)},
  language={eng},
  note={Gesehen am 02.05.2024},
  doi={10.11588/data/BX6REK},
  url={https://doi.org/10.11588/data/BX6REK},
  library={UB},
}
@article{UBHD-68960099,
  author={Zhang, Fengjun and Raabe, Carsten Alexander and Cardoso-Moreira, Margarida and Brosius, J{\"u}rgen and Kaessmann, Henrik and Schmitz, J{\"u}rgen},
  title={ExoPLOT},
  subtitle={representation of alternative splicing in human tissues and developmental stages with transposed element (TE) involvement},
  year={2022},
  pages={1-8},
  language={eng},
  issn={1089-8646},
  volume={114},
  note={Gesehen am 05.09.2022},
  journal={Genomics},
  doi={10.1016/j.ygeno.2022.110434},
}