@article{UBHD-68967601, author={Csabai, Luca and Fazekas, Dávid and Kadlecsik, Tamás and Szalay-Bekő, Máté and Bohár, Balázs and Madgwick, Matthew and Módos, Dezső and {\"O}lbei, Márton and Gul, Lejla and Sudhakar, Padhmanand and Kubisch, János and Oyeyemi, Oyebode James and Liska, Orsolya and Ari, Eszter and Hotzi, Bernadette and Billes, Viktor A and Molnár, Eszter and F{\"o}ldvári-Nagy, László and Csályi, Kitti and Demeter, Amanda and Pápai, Nóra and Koltai, Mihály and Varga, Máté and Lenti, Katalin and Farkas, Illés J and T{\"u}rei, Dénes and Csermely, Péter and Vellai, Tibor and Korcsmáros, Tamás}, title={SignaLink3}, subtitle={a multi-layered resource to uncover tissue-specific signaling networks}, year={2022}, pages={D701-D709}, language={eng}, issn={1362-4962}, volume={50}, number={D1 vom: 7. Jan.}, note={Online verf{\"u}gbar 11 October 2021 ; Gesehen am 27.09.2022}, journal={Nucleic acids research}, doi={10.1093/nar/gkab909}, } @article{UBHD-68957274, author={Dimitrov, Daniel and T{\"u}rei, Dénes and Garrido-Rodriguez, Martin and Burmedi, Paul L. and Nagai, James S. and Boys, Charlotte and Ramirez Flores, Ricardo O. and Kim, Hyojin and Szalai, Bence and Costa, Ivan G. and Valdeolivas, Alberto and Dugourd, Aurélien and Sáez Rodríguez, Julio}, title={Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data}, year={2022}, pages={1-13}, language={eng}, issn={2041-1723}, volume={13}, number={Artikel-ID 3224}, note={Gesehen am 25.08.2022}, journal={Nature Communications}, doi={10.1038/s41467-022-30755-0}, url={https://doi.org/10.1038/s41467-022-30755-0}, library={UB}, } @article{UBHD-69339848, author={Farr, Elias and Dimitrov, Daniel and Schmidt, Christina and T{\"u}rei, Dénes and Lobentanzer, Sebastian and Dugourd, Aurélien and Sáez Rodríguez, Julio}, title={MetalinksDB}, subtitle={a flexible and contextualizable resource of metabolite-protein interactions}, year={2024}, pages={bbae347$p1-12}, language={eng}, issn={1477-4054}, volume={25}, number={4 vom: Juli}, note={Ver{\"o}ffentlicht: 22. Juli 2024 ; Gesehen am 28.04.2025}, journal={Briefings in bioinformatics}, doi={10.1093/bib/bbae347}, } @article{UBHD-69149565, author={M{\"u}ller-Dott, Sophia and Tsirvouli, Eirini and Vazquez, Miguel and Ramirez Flores, Ricardo O. and Badia-i-Mompel, Pau and Fallegger, Robin and T{\"u}rei, Dénes and Lægreid, Astrid and Sáez Rodríguez, Julio}, title={Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities}, year={2023}, pages={10934-10949}, language={eng}, issn={1362-4962}, volume={51}, number={20}, note={Online verf{\"u}gbar: 16. Oktober 2023 ; Gesehen am 05.12.2023}, journal={Nucleic acids research}, doi={10.1093/nar/gkad841}, } @article{UBHD-68878946, author={Ostaszewski, Marek and T{\"u}rei, Dénes and Valdeolivas, Alberto and Dugourd, Aurélien and Sáez Rodríguez, Julio and Dopazo, Joaquin and Valencia, Alfonso and Kitano, Hiroaki and Barillot, Emmanuel and Auffray, Charles and Balling, Rudolf and Schneider, Reinhard}, title={COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms}, year={2021}, pages={1-22}, language={eng}, issn={1744-4292}, volume={17}, note={Gesehen am 16.02.2022}, journal={Molecular systems biology}, doi={10.15252/msb.202110387}, } @article{UBHD-68747895, author={T{\"u}rei, Dénes and Valdeolivas, Alberto and Gul, Lejla and Palacio-Escat, Nicolàs and Klein, Michal and Ivanova, Olga A. and {\"O}lbei, Márton and Gabor, Attila and Theis, Fabian and Módos, Dezső and Korcsmáros, Tamás and Sáez Rodríguez, Julio}, title={Integrated intra- and intercellular signaling knowledge for multicellular omics analysis}, year={2021}, pages={1-16}, language={eng}, issn={1744-4292}, volume={17}, note={Gesehen am 14.06.2021}, journal={Molecular systems biology}, doi={10.15252/msb.20209923}, url={https://doi.org/10.15252/msb.20209923}, library={UB}, }