@article{UBHD-68481950,
  author={Ahuja, Gaurav and Dieterich, Christoph},
  title={Loss of genomic integrity induced by lysosphingolipid imbalance drives ageing in the heart},
  year={2019},
  pages={20 S.},
  language={eng},
  issn={1469-3178},
  volume={20(2019},
  note={Gesehen am 29.01.2020},
  journal={EMBO reports},
  doi={10.15252/embr.201847407},
}
@article{UBHD-68876390,
  author={Bandiera, Roberto and Wagner, Rebecca E. and Britto-Borges, Thiago and Dieterich, Christoph and Dietmann, Sabine and Bornel{\"o}v, Susanne and Frye, Michaela},
  title={RN7SK small nuclear RNA controls bidirectional transcription of highly expressed gene pairs in skin},
  year={2021},
  pages={1-14},
  language={eng},
  issn={2041-1723},
  volume={12},
  number={Artikel-ID 5864},
  note={Gesehen am 09.02.2022},
  journal={Nature Communications},
  doi={10.1038/s41467-021-26083-4},
}
@article{UBHD-68930261,
  author={Bencun, Maja and Britto-Borges, Thiago and Eschenbach, Jessica and Dieterich, Christoph},
  title={New tricks with old dogs},
  subtitle={computational identification and experimental validation of new miRNA-mRNA regulation in hiPSC-CMs},
  year={2022},
  pages={1-17},
  language={eng},
  issn={2227-9059},
  volume={10},
  note={Published: 6 February 2022 ; Gesehen am 13.06.2022},
  journal={Biomedicines},
  doi={10.3390/biomedicines10020391},
}
@article{UBHD-68395329,
  author={Blackwood, Erik A. and Sandmann, Christoph and M{\"u}ller, Oliver J. and Jakobi, Tobias and Dieterich, Christoph and Katus, Hugo and Doroudgar, Shirin},
  title={ATF6 regulates cardiac hypertrophy by transcriptional induction of the mTORC1 activator, Rheb},
  year={2019},
  pages={79-93},
  language={eng},
  issn={1524-4571},
  volume={124},
  number={1},
  note={Gesehen am 10.06.2019},
  journal={Circulation research},
  doi={10.1161/CIRCRESAHA.118.313854},
}
@article{UBHD-68406837,
  author={Boeckel, Jes-Niels and Katus, Hugo and Haas, Jan and Kayvanpour, Elham and Grabe, Niels and Dieterich, Christoph and Leuschner, Florian and Meder, Benjamin},
  title={Identification and regulation of the long non-coding RNA Heat2 in heart failure},
  year={2019},
  pages={13-22},
  language={eng},
  issn={1095-8584},
  volume={126},
  note={Available online 13 November 2018 ; Gesehen am 10.07.2019},
  journal={Journal of molecular and cellular cardiology},
  doi={10.1016/j.yjmcc.2018.11.004},
}
@article{UBHD-68560626,
  author={B{\"o}hm, Volker and Britto-Borges, Thiago and Steckelberg, Anna-Lena and Singh, Kusum K. and Gerbracht, Jennifer V. and Gueney, Elif and Blazquez, Lorea and Altm{\"u}ller, Janine and Dieterich, Christoph and Gehring, Niels H.},
  title={Exon junction complexes suppress spurious splice sites to safeguard transcriptome integrity},
  year={2018},
  pages={14 S.},
  language={eng},
  issn={1097-4164},
  volume={72(2018},
  note={Gesehen am 02.04.2020},
  journal={Molecular cell},
  doi={10.1016/j.molcel.2018.08.030},
}
@article{UBHD-68786077,
  author={B{\"o}hm, Volker and K{\"u}ckelmann, Sabrina and Gerbracht, Jennifer V. and Kallabis, Sebastian and Britto-Borges, Thiago and Altm{\"u}ller, Janine and Kr{\"u}ger, Marcus and Dieterich, Christoph and Gehring, Niels H.},
  title={SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity},
  year={2021},
  pages={1-19},
  language={eng},
  issn={2041-1723},
  volume={12},
  number={Artikel-ID 3965},
  note={Gesehen am 04.10.2021},
  journal={Nature Communications},
  doi={10.1038/s41467-021-24046-3},
}
@article{UBHD-68866506,
  author={Boileau, Etienne and Altm{\"u}ller, Janine and Naarmann-de Vries, Isabel S. and Dieterich, Christoph},
  title={A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover},
  year={2021},
  pages={1-14},
  language={eng},
  issn={1477-4054},
  volume={22},
  note={Gesehen am 14.01.2022},
  journal={Briefings in bioinformatics},
  doi={10.1093/bib/bbab219},
}
@article{UBHD-68801952,
  author={Boileau, Etienne and Doroudgar, Shirin and Riechert, Eva and J{\"u}rgensen, Lonny and Ho, Thanh Cao and Katus, Hugo and V{\"o}lkers, Mirko and Dieterich, Christoph},
  title={Corrigendum: A multi-network comparative analysis of transcriptome and translatome identifies novel hub genes in cardiac remodeling},
  year={2021},
  pages={1 S.},
  language={eng},
  issn={1664-8021},
  volume={12},
  number={Artikel-ID 706542},
  journal={Frontiers in genetics},
  doi={10.3389/fgene.2021.706542},
}
@article{UBHD-68966568,
  author={Boileau, Etienne and Li, Xue and Naarmann-de Vries, Isabel S. and Becker, Christian and Casper, Ramona and Altm{\"u}ller, Janine and Leuschner, Florian and Dieterich, Christoph},
  title={Full-length spatial transcriptomics reveals the unexplored isoform diversity of the myocardium post-MI},
  year={2022},
  pages={1-11},
  language={eng},
  issn={1664-8021},
  volume={13(2022) vom: Juli},
  number={Artikel-ID 912572},
  note={Gesehen am 22.09.2022},
  journal={Frontiers in genetics},
  doi={10.3389/fgene.2022.912572},
  url={https://doi.org/10.3389/fgene.2022.912572},
  library={UB},
}
@article{UBHD-68665463,
  author={Boileau, Etienne and Doroudgar, Shirin and Riechert, Eva and J{\"u}rgensen, Lonny and Ho, Thanh Cao and Katus, Hugo and V{\"o}lkers, Mirko and Dieterich, Christoph},
  title={A multi-network comparative analysis of transcriptome and translatome identifies novel hub genes in cardiac remodeling},
  year={2020},
  pages={11 S.},
  language={eng},
  issn={1664-8021},
  volume={11(2020) Artikel-Nummer 583124},
  number={11 Seiten},
  note={Gesehen am 25.11.2020},
  journal={Frontiers in genetics},
  doi={10.3389/fgene.2020.583124},
  url={https://doi.org/10.3389/fgene.2020.583124},
  library={UB},
}
@article{UBHD-68562436,
  author={Boileau, Etienne and Dieterich, Christoph},
  title={RNA modification level estimation with pulseR},
  year={2018},
  pages={8 S.},
  language={eng},
  issn={2073-4425},
  volume={9(2018},
  note={Gesehen am 07.04.2020},
  journal={Genes},
  doi={10.3390/genes9120619},
}
@article{UBHD-69007637,
  author={Britto-Borges, Thiago and Ludt, Annekathrin and Boileau, Etienne and Gjerga, Enio and Marini, Federico and Dieterich, Christoph},
  title={Magnetique},
  subtitle={an interactive web application to explore transcriptome signatures of heart failure},
  year={2022},
  pages={1-9},
  language={eng},
  issn={1479-5876},
  volume={20},
  number={Artikel-ID 513},
  note={Gesehen am 18.01.2023},
  journal={Journal of translational medicine},
  doi={10.1186/s12967-022-03694-z},
  url={https://doi.org/10.1186/s12967-022-03694-z},
  library={UB},
}
@article{UBHD-69276233,
  author={Britto-Borges, Thiago and Gehring, Niels H. and B{\"o}hm, Volker and Dieterich, Christoph},
  title={NMDtxDB: data-driven identification and annotation of human NMD target transcripts},
  year={2024},
  pages={1277-1291},
  language={eng},
  issn={1469-9001},
  volume={30},
  number={10},
  note={Online ver{\"o}ffentlicht: 2. August 2024 ; Gesehen am 25.11.2024},
  journal={RNA},
  doi={10.1261/rna.080066.124},
}
@article{UBHD-69103328,
  author={Bruns, Bastian and Antoniou, Marilena and Baier, Irena and Joos, Maximilian and Sevinchan, Meryem and Moog, Marie-Christine and Dieterich, Christoph and Friederich, Hans-Christoph and Herzog, Wolfgang and Frey, Norbert and Schultz, Jobst-Hendrik and Backs, Johannes},
  title={Calcineurin signaling promotes takotsubo syndrome},
  year={2023},
  pages={645-655},
  language={eng},
  issn={2731-0590},
  volume={2},
  number={7},
  note={Gesehen am 01.08.2023},
  journal={Nature cardiovascular research},
  doi={10.1038/s44161-023-00296-w},
}
@article{UBHD-68706917,
  author={Camacho Londoño, Juan Eduardo and Kuryshev, Vladimir and Zorn, Markus and Saar, Kathrin and Tian, Qinghai and H{\"u}bner, Norbert and Nawroth, Peter Paul and Dietrich, Alexander and Birnbaumer, Lutz and Lipp, Peter and Dieterich, Christoph and Freichel, Marc},
  title={Transcriptional signatures regulated by TRPC1/C4-mediated background Ca 2+ entry after pressure-overload induced cardiac remodelling},
  year={2021},
  pages={86-104},
  language={eng},
  issn={1873-1732},
  volume={159},
  note={Im Titel sind die Ziffer "2" und "+" hochgestellt ; Available online 29 July 2020 ; Gesehen am 04.03.2021},
  journal={Progress in biophysics & molecular biology},
  doi={10.1016/j.pbiomolbio.2020.07.006},
}
@article{UBHD-69285261,
  author={Chan, Adrian and Naarmann-de Vries, Isabel S. and Scheitl, Carolin P. M. and H{\"o}bartner, Claudia and Dieterich, Christoph},
  title={Detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data},
  year={2024},
  pages={1-8},
  language={eng},
  issn={2041-1723},
  volume={15},
  number={Artikel-ID 3323},
  note={Im Titel ist die Ziffer "6" hochgestellt ; Gesehen am 18.12.2024},
  journal={Nature Communications},
  doi={10.1038/s41467-024-47661-2},
}
@article{UBHD-68572170,
  author={Cheng, Jun and Metge, Franziska and Dieterich, Christoph},
  title={Specific identification and quantification of circular RNAs from sequencing data},
  year={2016},
  pages={1094-1096},
  language={eng},
  issn={1367-4811 and 1460-2059},
  volume={32},
  number={7},
  note={Advance Access Publication Date: 9 November 2015 ; Gesehen am 30.04.2020},
  journal={Bioinformatics},
  doi={10.1093/bioinformatics/btv656},
}
@book{UBHD-68344633,
  editor={Dieterich, Christoph and Papantōnēs, Akēs},
  title={Circular RNAs},
  subtitle={Methods and Protocols},
  publisher={Humana Press},
  address={New York, NY},
  year={2018},
  pages={Online-Ressource (XIII, 220 p. 50 illus., 33 illus. in color, online resource)},
  language={eng},
  isbn={978-1-4939-7562-4},
  series={Springer eBook Collection},
  doi={10.1007/978-1-4939-7562-4},
  keywords={Zirkul{\"a}re RNA},
}
@book{UBHD-68215933,
  editor={Dieterich, Christoph and Papantōnēs, Akēs and Papantōnēs, Akēs},
  title={Circular RNAs},
  subtitle={methods and protocols},
  publisher={Humana Press},
  address={New York, NY},
  year={2018},
  pages={xiii, 220 Seiten},
  language={eng},
  isbn={978-1-4939-7561-7},
  number={ARRAY(0x55776fe9adf0)},
  series={Methods in molecular biology},
  note={Includes bibliographical references and index},
  keywords={Zirkul{\"a}re RNA ; Zirkul{\"a}re RNA},
  library={UB [Signatur: UBN/WD 5355 D565]},
}
@article{UBHD-68410830,
  author={Dal Magro, Christina and Keller, Patrick and Jacobs, Anja and Dieterich, Christoph},
  title={A vastly increased chemical variety of RNA modifications containing a thioacetal structure},
  year={2018},
  pages={7893-7897},
  language={eng},
  issn={1521-3773},
  volume={57},
  number={26},
  note={Gesehen am 22.07.2019},
  journal={Angewandte Chemie},
  doi={10.1002/anie.201713188},
}
@article{UBHD-68933998,
  author={Daswani, Reetu Ramesh and Gilardi, Carlotta and Soutschek, Michael and Nanda, Prakruti and Weiss, Kerstin and Bicker, Silvia and Fiore, Roberto and Dieterich, Christoph and Germain, Pierre-Luc and Winterer, Jochen and Schratt, Gerhard},
  title={MicroRNA-138 controls hippocampal interneuron function and short-term memory in mice},
  year={2022},
  pages={1-24},
  language={eng},
  issn={2050-084X},
  volume={11},
  number={Artikel-ID e74056},
  note={Version of record published: March 29, 2022 (version 2) ; Mit zus{\"a}tzlichen Informationen: Brief zur Entscheidung und Antwort der Autoren ; Gesehen am 23.06.2022},
  journal={eLife},
  doi={10.7554/eLife.74056},
}
@book{UBHD-68994071,
  author={Dieterich, Christoph},
  title={CARDIO:DE},
  publisher={Universit{\"a}t},
  address={Heidelberg},
  year={2022},
  pages={1 Online-Ressource (2 Files)},
  language={eng},
  note={Gesehen am 07.12.2022},
  doi={10.11588/data/AFYQDY},
  url={https://doi.org/10.11588/data/AFYQDY},
  library={UB},
}
@book{UBHD-69254220,
  author={Dieterich, Christoph},
  title={Comparative sequence analysis and association mining in gene regulation},
  year={2005},
  pages={Online-Ressource},
  language={ger},
  note={Dateiformat: zip, Dateien im PDF-Format},
  school={Berlin, Freie Univ., Diss, 2005},
  keywords={Wirbeltiere / Genregulation / Data Mining ; S{\"a}ugetiere / Promotor <Genetik> / Sequenzdaten / Data Mining},
}
@article{UBHD-68428984,
  author={Doroudgar, Shirin and Sandmann, Christoph and Boileau, Etienne and Malone, Brandon and Riechert, Eva and Górska, Aga and Jakobi, Tobias and Sandmann, Clara and J{\"u}rgensen, Lonny and Kmietczyk, Vivien and Malovrh, Ellen and Burghaus-Zhang, Jana and Rettel, Mandy and Stein, Frank and Younesi, Fereshteh and Friedrich, Ulrike A. and Mauz, Victoria and Backs, Johannes and Kramer, G{\"u}nter and Katus, Hugo and Dieterich, Christoph and V{\"o}lkers, Mirko},
  title={Monitoring cell-type-specific gene expression using ribosome profiling in vivo during cardiac hemodynamic stress},
  year={2019},
  pages={431-448},
  language={eng},
  issn={1524-4571},
  volume={125},
  number={4},
  note={Gesehen am 11.09.2019},
  journal={Circulation research},
  doi={10.1161/CIRCRESAHA.119.314817},
}
@book{UBHD-68179614,
  author={Ehret Kasemo, Totta and Spork, Simone and Dieterich, Christoph and Lucius, Richard and Heitlinger, Emanuel},
  title={Dual RNA-seq reveals no plastic transcriptional response of the coccidian parasite Eimeria falciformis to host immune defenses},
  publisher={BioMed Central; Springer},
  address={London; Berlin; Heidelberg},
  year={2017},
  pages={1 Online-Ressource},
  language={eng},
  note={Aus: BMC Genomics, 18 (2017), Nr. 686. pp. 1-17. ISSN 1471-2164},
  doi={10.1186/s12864-017-4095-6},
  url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-234957},
  library={UB},
}
@article{UBHD-68902542,
  author={Froese, Natali and Cordero, Julio and Abouissa, Aya and Trogisch, Felix and Grein, Steve and Szaroszyk, Malgorzata and Wang, Yong and Gigina, Anna and Korf-Klingebiel, Mortimer and Bosnjak, Berislav and Davenport, Colin F. and Wiehlmann, Lutz and Geffers, Robert and Riechert, Eva and J{\"u}rgensen, Lonny and Boileau, Etienne and Lin, Yanzhu and Dieterich, Christoph and F{\"o}rster, Reinhold and Bauersachs, Johann and Ola, Roxana and Dobreva, Gergana and V{\"o}lkers, Mirko and Heineke, J{\"o}rg},
  title={Analysis of myocardial cellular gene expression during pressure overload reveals matrix based functional intercellular communication},
  year={2022},
  pages={1-29},
  language={eng},
  issn={2589-0042},
  volume={25},
  note={Gesehen am 01.04.2022},
  journal={iScience},
  doi={10.1016/j.isci.2022.103965},
  url={https://doi.org/10.1016/j.isci.2022.103965},
  library={UB},
}
@article{UBHD-68666018,
  author={Gerbracht, Jennifer V. and Britto-Borges, Thiago and Dieterich, Christoph},
  title={CASC3 promotes transcriptome-wide activation of nonsense-mediated decay by the exon junction complex},
  year={2020},
  pages={8626-8644},
  language={eng},
  issn={1362-4962},
  volume={48},
  number={15},
  note={Gesehen am 26.11.2020},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkaa564},
}
@article{UBHD-69115762,
  author={Gjerga, Enio and Naarmann-de Vries, Isabel S. and Dieterich, Christoph},
  title={Characterizing alternative splicing effects on protein interaction networks with LINDA},
  year={2023},
  pages={i458-i464},
  language={eng},
  issn={1367-4811 and 1460-2059},
  volume={39},
  number={Supplement_1},
  note={Ver{\"o}ffentlicht: 30. Juni 2023 ; Gesehen am 24.08.2023},
  journal={Bioinformatics},
  doi={10.1093/bioinformatics/btad224},
}
@article{UBHD-69284011,
  author={Gjerga, Enio and Dewenter, Matthias and Britto-Borges, Thiago and Grosso, Johannes and Stein, Frank and Eschenbach, Jessica and Rettel, Mandy and Backs, Johannes and Dieterich, Christoph},
  title={Transverse aortic constriction multi-omics analysis uncovers pathophysiological cardiac molecular mechanisms},
  year={2024},
  pages={1-10},
  language={eng},
  issn={1758-0463},
  volume={2024},
  number={Artikel-ID baae060},
  note={Gesehen am 16.12.2024},
  journal={Database},
  doi={10.1093/database/baae060},
}
@article{UBHD-69307567,
  author={Gonzalo-Calvo, David de and Karaduzovic-Hadziabdic, Kanita and Dalgaard, Louise Torp and Dieterich, Christoph and Perez-Pons, Manel and Hatzigeorgiou, Artemis and Devaux, Yvan and Kararigas, Georgios},
  title={Machine learning for catalysing the integration of noncoding RNA in research and clinical practice},
  year={2024},
  pages={1-16},
  language={eng},
  issn={2352-3964},
  volume={106},
  number={Artikel-ID 105247},
  note={Gesehen am 24.02.2025},
  journal={EBioMedicine},
  doi={10.1016/j.ebiom.2024.105247},
}
@article{UBHD-69088601,
  author={Górska, Aga and Sandmann, Clara and Riechert, Eva and Sandmann, Christoph and Malovrh, Ellen and Varma, Eshita and Kmietczyk, Vivien and {\"O}lschl{\"a}ger, Julie and J{\"u}rgensen, Lonny and Kamuf-Schenk, Verena and Stroh, Claudia and Furkel, Jennifer and Konstandin, Mathias and Sticht, Carsten and Boileau, Etienne and Dieterich, Christoph and Frey, Norbert and Katus, Hugo and Doroudgar, Shirin and V{\"o}lkers, Mirko},
  title={Muscle-specific Cand2 is translationally upregulated by mTORC1 and promotes adverse cardiac remodeling},
  year={2021},
  pages={1-19},
  language={eng},
  issn={1469-3178},
  volume={22},
  note={Gesehen am 22.06.2023},
  journal={EMBO reports},
  doi={10.15252/embr.202052170},
  url={https://doi.org/10.15252/embr.202052170},
  library={UB},
}
@article{UBHD-69142572,
  author={Grosch, Markus and Schraft, Laura and Chan, Adrian and K{\"u}chenhoff, Leonie and Rapti, Kleopatra and Ferreira, Anne-Maud and Kornienko, Julia and Li, Shengdi and Radke, Michael H. and Kr{\"a}mer, Chiara and Clauder-M{\"u}nster, Sandra and Perlas, Emerald and Backs, Johannes and Gotthardt, Michael and Dieterich, Christoph and Hoogenhof, Maarten van den and Grimm, Dirk and Steinmetz, Lars M.},
  title={Striated muscle-specific base editing enables correction of mutations causing dilated cardiomyopathy},
  year={2023},
  pages={1-15},
  language={eng},
  issn={2041-1723},
  volume={14},
  number={Artikel-ID 3714},
  note={Online ver{\"o}ffentlicht: 22. Juni 2023 ; Gesehen am 14.11.2023},
  journal={Nature Communications},
  doi={10.1038/s41467-023-39352-1},
}
@book{UBHD-69254260,
  author={G{\"u}nther, Stefan and Dieterich, Christoph},
  organization={Max-Planck-Institut f{\"u}r Herz- und Lungenforschung and Klaus-Tschira-Institute f{\"u}r Computational Cardiology},
  title={Deciphering heterogeneity of splicing events of adult murine cardiomyocytes on single cell level},
  subtitle={Abschlussbericht : Projekttyp: Shared expertise : Laufzeit des Projektes: 01.01.2020-30.06.2021},
  publisher={Max-Planck-Institut f{\"u}r Herz- und Lungenforschung},
  address={Bad Nauheim},
  year={2021},
  pages={9 Bl{\"a}tter, 1 ungez{\"a}hltes Blatt},
  language={ger and eng},
  note={F{\"o}rderkennzeichen BMBF 81X2200313 ; Unterschiede zwischen dem gedruckten Dokument und der elektronischen Ressource k{\"o}nnen nicht ausgeschlossen werden},
  keywords={Kardiovaskul{\"a}re Krankheit / Herzmuskelzelle / Einzelzellanalyse / RNS-Edierung / RNS-Spleißen / Tiermodell},
}
@book{UBHD-69254261,
  author={G{\"u}nther, Stefan and Dieterich, Christoph},
  organization={Max-Planck-Institut f{\"u}r Herz- und Lungenforschung and Klaus-Tschira-Institute f{\"u}r Computational Cardiology},
  title={Deciphering heterogeneity of splicing events of adult murine cardiomyocytes on single cell level},
  subtitle={Abschlussbericht : Projekttyp: shared expertise : Laufzeit des Projektes: 01.01.2020-30.06.2021},
  publisher={[Max-Planck-Institut f{\"u}r Herz- und Lungenforschung]},
  address={Bad Nauheim},
  year={2021},
  pages={1 Online-Ressource (10 Seiten, 253,21 KB)},
  language={ger},
  note={F{\"o}rderkennzeichen BMBF 81X2200313 ; Weiterer Autor und durchf{\"u}hrende Institution dem Berichtsblatt entnommen ; Unterschiede zwischen dem gedruckten Dokument und der elektronischen Ressource k{\"o}nnen nicht ausgeschlossen werden},
  doi={10.2314/KXP:1830424831},
  keywords={Kardiovaskul{\"a}re Krankheit / Herzmuskelzelle / Einzelzellanalyse / RNS-Edierung / RNS-Spleißen / Tiermodell},
}
@article{UBHD-68421112,
  author={Haarbrandt, Birger and Knaup-Gregori, Petra and Dieterich, Christoph and J{\"a}ger, Dirk and Eils, Roland},
  title={HiGHmed},
  subtitle={an open platform approach to enhance care and research across institutional boundaries},
  year={2018},
  pages={e66-e81},
  language={eng},
  issn={2511-705X},
  volume={57},
  number={S 01},
  note={Gesehen am 15.08.2019},
  journal={Methods of information in medicine},
  doi={10.3414/ME18-02-0002},
}
@article{UBHD-69222896,
  author={Hartstock, Katja and K{\"u}ck, Nadine A. and Spacek, Petr and Ovcharenko, Anna and Huewel, Sabine and Cornelissen, Nicolas V. and Bollu, Amarnath and Dieterich, Christoph and Rentmeister, Andrea},
  title={MePMe-seq},
  subtitle={antibody-free simultaneous m6A and m5C mapping in mRNA by metabolic propargyl labeling and sequencing},
  year={2023},
  pages={1-19},
  language={eng},
  issn={2041-1723},
  volume={14},
  number={Artikel-ID 7154},
  note={Im Titel sind die Zahlen 6 in m6A und 5 in m5C hochgestellt ; Gesehen am 12.06.2024},
  journal={Nature Communications},
  doi={10.1038/s41467-023-42832-z},
}
@article{UBHD-68760850,
  author={Hesse, Julia and Owenier, Christoph and Lautwein, Tobias and Zalfen, Ria and Weber, Jonas F and Ding, Zhaoping and Alter, Christina and Lang, Alexander and Grandoch, Maria and Gerdes, Norbert and Fischer, Jens W and Klau, Gunnar W and Dieterich, Christoph and K{\"o}hrer, Karl and Schrader, J{\"u}rgen},
  title={Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart},
  year={2021},
  pages={1-21},
  language={eng},
  issn={2050-084X},
  volume={10},
  number={Artikel-ID e65921},
  note={Gesehen am 16.07.2021},
  journal={eLife},
  doi={10.7554/eLife.65921},
}
@article{UBHD-68963695,
  author={Heum{\"u}ller, Andreas and Jones, Alisha N. and Mourão, André and Klangwart, Marius and Shi, Chenyue and Wittig, Ilka and Fischer, Ariane and Muhly-Reinholz, Marion and Buchmann, Giulia K. and Dieterich, Christoph and Potente, Michael and Braun, Thomas and Grote, Phillip and Jaé, Nicolas and Sattler, Michael and Dimmeler, Stefanie},
  title={Locus-conserved circular RNA cZNF292 controls endothelial cell flow responses},
  year={2022},
  pages={67-79},
  language={eng},
  issn={1524-4571},
  volume={130},
  number={1},
  note={Gesehen am 13.09.2022},
  journal={Circulation research},
  doi={10.1161/CIRCRESAHA.121.320029},
}
@article{UBHD-68576738,
  author={Hinze, Florian and Dieterich, Christoph and Radke, Michael H. and Granzier, Henk and Gotthardt, Michael},
  title={Reducing RBM20 activity improves diastolic dysfunction and cardiac atrophy},
  year={2016},
  pages={1349-1358},
  language={eng},
  issn={1432-1440},
  volume={94},
  number={12},
  note={Gesehen am 14.05.2020},
  journal={Journal of molecular medicine},
  doi={10.1007/s00109-016-1483-3},
}
@article{UBHD-68464263,
  author={Hosseinzadeh, Ava and Stylianou, Marios and Lopes, José Pedro and M{\"u}ller, Daniel C. and H{\"a}ggman, André and Holmberg, Sandra and Grumaz, Christian and Johansson, Anders and Sohn, Kai and Dieterich, Christoph and Urban, Constantin F.},
  title={Stable redox-cycling nitroxide tempol has antifungal and immune-modulatory properties},
  year={2019},
  language={eng},
  issn={1664-302X},
  volume={10(2019) Artikel-Nummer 1843},
  number={13 Seiten},
  note={Gesehen am 05.12.2019},
  journal={Frontiers in microbiology},
  doi={10.3389/fmicb.2019.01843},
}
@article{UBHD-68397539,
  author={Ignarski, Michael and Rill, Constantin and Kaiser, Rainer W. J. and Kaldirim, Madlen and Neuhaus, René and Esmaillie, Reza and Li, Xinping and Klein, Corinna and Bohl, Katrin and Petersen, Maike and Frese, Christian K. and H{\"o}hne, Martin and Atanassov, Ilian and Rinschen, Markus M. and H{\"o}pker, Katja and Schermer, Bernhard and Benzing, Thomas and Dieterich, Christoph and Fabretti, Francesca and M{\"u}ller, Roman-Ulrich},
  title={The RNA-protein interactome of differentiated kidney tubular epithelial cells},
  year={2019},
  pages={564-576},
  language={eng},
  issn={1533-3450},
  volume={30},
  number={4},
  note={Gesehen am 11.06.2019},
  journal={Journal of the American Society of Nephrology},
  doi={10.1681/ASN.2018090914},
}
@article{UBHD-68474739,
  author={Jakobi, Tobias and Uvarovskii, Alexey and Dieterich, Christoph},
  title={Circtools - a one-stop software solution for circular RNA research},
  year={2018},
  pages={2326-2328},
  language={eng},
  issn={1367-4811 and 1460-2059},
  volume={35},
  number={13},
  note={Gesehen am 13.01.2020},
  journal={Bioinformatics},
  doi={10.1093/bioinformatics/bty948},
}
@article{UBHD-68406902,
  author={Jakobi, Tobias and Dieterich, Christoph},
  title={Computational approaches for circular RNA analysis},
  year={2019},
  pages={14 S.},
  language={eng},
  issn={1757-7012},
  volume={10(2019},
  note={Gesehen am 10.07.2019},
  journal={Wiley interdisciplinary reviews},
  doi={10.1002/wrna.1528},
}
@article{UBHD-68647366,
  author={Jakobi, Tobias and Siede, Dominik and Eschenbach, Jessica and Heum{\"u}ller, Andreas W. and Busch, Martin and Nietsch, Rouven and Meder, Benjamin and Most, Patrick and Dimmeler, Stefanie and Backs, Johannes and Katus, Hugo and Dieterich, Christoph},
  title={Deep characterization of circular RNAs from human cardiovascular cell models and cardiac tissue},
  year={2020},
  pages={25 S.},
  language={eng},
  issn={2073-4409},
  volume={9(2020},
  note={Gesehen am 12.10.2020},
  journal={Cells},
  doi={10.3390/cells9071616},
}
@incollection{UBHD-68564344,
  author={Jakobi, Tobias and Dieterich, Christoph},
  title={Deep computational circular RNA analytics from RNA-seq data},
  year={2018},
  pages={9-25},
  language={eng},
  isbn={978-1-4939-7562-4},
  note={Gesehen am 15.04.2020},
  booktitle={Circular RNAs},
  editor={Dieterich, Christoph and Papantōnēs, Akēs},
  doi={10.1007/978-1-4939-7562-4_2},
}
@article{UBHD-68341772,
  author={Jakobi, Tobias and Dieterich, Christoph},
  title={Profiling and validation of the circular RNA repertoire in adult murine hearts},
  year={2016},
  pages={216-223},
  language={eng},
  issn={2210-3244},
  volume={14},
  number={4},
  note={Gesehen am 18.12.2018},
  journal={Genomics, proteomics & bioinformatics},
  doi={10.1016/j.gpb.2016.02.003},
}
@article{UBHD-68464741,
  author={Jebessa, Zegeye Hailu and Dewenter, Matthias and Lehmann, Lorenz and Xu, Chang and Schreiter, Friederike and Siede, Dominik and Jones, Barbara Christine and Federico, Giuseppina and Sauer, Sven and Fischer, Tamás and M{\"u}ller, Oliver J. and Dieterich, Christoph and Most, Patrick and Gr{\"o}ne, Hermann-Josef and Katus, Hugo and Tyedmers, Jens and Backs, Johannes},
  title={The lipid-droplet-associated protein ABHD5 protects the heart through proteolysis of HDAC4},
  year={2019},
  pages={1157-1167},
  language={eng},
  issn={2522-5812},
  volume={1},
  number={11},
  note={Das PDF enth{\"a}lt zus{\"a}tzlich einen Anhang von 12 Seiten ; Gesehen am 06.12.2019},
  journal={Nature metabolism},
  doi={10.1038/s42255-019-0138-4},
}
@article{UBHD-68707535,
  author={Joglekar, Anoushka and Wang, Qi and Dieterich, Christoph},
  title={A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain},
  year={2021},
  pages={1-16},
  language={eng},
  issn={2041-1723},
  volume={12},
  number={Artikel-ID 463},
  note={Gesehen am 05.05.2022},
  journal={Nature Communications},
  doi={10.1038/s41467-020-20343-5},
}
@article{UBHD-69133156,
  author={Josipovic, Natasa and Ebbesen, Karoline K. and Zirkel, Anne and Danieli-Mackay, Adi and Dieterich, Christoph and Kurian, Leo and Hansen, Thomas B. and Papantonis, Argyris},
  title={circRAB3IP modulates cell proliferation by reorganizing gene expression and mRNA processing in a paracrine manner},
  year={2022},
  pages={1481-1495},
  language={eng},
  issn={1469-9001},
  volume={28},
  number={11 vom: Nov.},
  note={Gesehen am 24.10.2023},
  journal={RNA},
  doi={10.1261/rna.079195.122},
}
@article{UBHD-68657347,
  author={Kapoor, Utkarsh and Jakobi, Tobias and Dieterich, Christoph},
  title={ADAR-deficiency perturbs the global splicing landscape in mouse tissues},
  year={2020},
  pages={1107-1118},
  language={eng},
  issn={1549-5469},
  volume={30},
  number={8},
  note={Gesehen am 04.11.2020},
  journal={Genome research},
  doi={10.1101/gr.256933.119},
}
@article{UBHD-68575168,
  author={Kel, Ivan and Chang, Zisong and Galluccio, Nadia and Romeo, Margherita and Beretta, Stefano and Diomede, Luisa and Mezzelani, Alessandra and Milanesi, Luciano and Dieterich, Christoph and Merelli, Ivan},
  title={SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans},
  year={2016},
  pages={3447-3458},
  language={eng},
  issn={1742-2051},
  volume={12},
  number={11},
  note={Gesehen am 11.05.2020},
  journal={Molecular BioSystems},
  doi={10.1039/C6MB00453A},
}
@article{UBHD-68804830,
  author={K{\"o}rtel, Nadine and R{\"u}cklé, Cornelia and Zhou, You and Busch, Anke and Hoch-Kraft, Peter and Sutandy, F. X. Reymond and Haase, Jacob and Pradhan, Mihika and Musheev, Michael and Ostareck, Dirk and Ostareck-Lederer, Antje and Dieterich, Christoph and H{\"u}ttelmaier, Stefan and Niehrs, Christof and Rausch, Oliver and Dominissini, Dan and K{\"o}nig, Julian and Zarnack, Kathi},
  title={Deep and accurate detection of m6A RNA modifications using miCLIP2 and m6Aboost machine learning},
  year={2021},
  pages={1-19},
  language={eng},
  issn={1362-4962},
  volume={49},
  note={Im Titel ist die Zahl 6 im Ausdruck "m6A" hochgestellt},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkab485},
}
@incollection{UBHD-69254290,
  author={Krefting, Dagmar and Mutters, Nico T. and Pryss, R{\"u}diger and Sedlmayr, Martin and Boeker, Martin and Dieterich, Christoph and Koll, Caroline and M{\"u}ller-Schilling, Martina and Slagman, Anna and Walthemath, Dagmar and Wulff, Antje and Zenker, Sven},
  title={Herding cats in pandemic times},
  subtitle={towards technological and organizational convergence of heterogeneous solutions for investigating and mastering the pandemic in university medical centers},
  year={2024},
  pages={1271-1275},
  language={eng},
  isbn={978-1-64368-457-4},
  booktitle={MEDINFO 2023 - the 3uture is accessible},
  editor={Bichel-Findlay, Jen and Otero, Paula Daniela and Scott, Philip and Huesing, Elaine},
  doi={10.3233/SHTI231169},
}
@article{UBHD-68430754,
  author={Lackinger, Martin and Sungur, A. {\"O}zge and Dieterich, Christoph and Schwarting, Rainer and W{\"o}hr, Markus and Schratt, Gerhard},
  title={A placental mammal-specific microRNA cluster acts as a natural brake for sociability in mice},
  year={2019},
  pages={e46429},
  language={eng},
  issn={1469-3178},
  volume={20},
  number={2},
  note={Gesehen am 17.09.2019},
  journal={EMBO reports},
  doi={10.15252/embr.201846429},
}
@article{UBHD-68248410,
  author={Lee, Hyun Ju and Dieterich, Christoph},
  title={A post-transcriptional program coordinated by CSDE1 prevents intrinsic neural differentiation of human embryonic stem cells},
  year={2017},
  language={eng},
  issn={2041-1723},
  volume={8(2017) Artikel-Nummer 1456},
  number={19 Seiten},
  note={Gesehen am 02.05.2018},
  journal={Nature Communications},
  doi={10.1038/s41467-017-01744-5},
}
@article{UBHD-69001319,
  author={Lerchenm{\"u}ller, Carolin and Vujic, Ana and Mittag, Sonja and Wang, Annie and Rabolli, Charles P. and Heß, Chiara and Betge, Fynn and Rangrez, Ashraf Yusuf and Chaklader, Malay and Guillermier, Christelle and Gyngard, Frank and Roh, Jason D. and Li, Haobo and Steinhauser, Matthew L. and Frey, Norbert and Rothermel, Beverly and Dieterich, Christoph and Rosenzweig, Anthony and Lee, Richard T.},
  title={Restoration of cardiomyogenesis in aged mouse hearts by voluntary exercise},
  year={2022},
  pages={412-426},
  language={eng},
  issn={1524-4539},
  volume={146},
  number={5 vom: Aug.},
  note={Gesehen am 03.01.2023},
  journal={Circulation},
  doi={10.1161/CIRCULATIONAHA.121.057276},
}
@article{UBHD-68975306,
  author={Lin, Rixing and Lopez, Juan Pablo and Cruceanu, Cristiana and Pierotti, Caroline and Fiori, Laura M. and Squassina, Alessio and Chillotti, Caterina and Dieterich, Christoph and Mellios, Nikolaos and Turecki, Gustavo},
  title={Circular RNA circCCNT2 is upregulated in the anterior cingulate cortex of individuals with bipolar disorder},
  year={2021},
  pages={1-8},
  language={eng},
  issn={2158-3188},
  volume={11},
  number={Artikel-ID 629},
  note={Gesehen am 18.10.2022},
  journal={Translational Psychiatry},
  doi={10.1038/s41398-021-01746-4},
}
@article{UBHD-69276191,
  author={Lorenzo, Jose Paulo and Molla, Linda and Amro, Elias Moris and Ibarra, Ignacio L. and Ruf, Sandra and Neber, Cedrik and Gkougkousis, Christos and Ridani, Jana and Subramani, Poorani Ganesh and Boulais, Jonathan and Harjanto, Dewi and Vonica, Alin and Di Noia, Javier M. and Dieterich, Christoph and Zaugg, Judith B. and Papavasiliou, Nina},
  title={APOBEC2 safeguards skeletal muscle cell fate through binding chromatin and regulating transcription of non-muscle genes during myoblast differentiation},
  year={2024},
  pages={1-12},
  language={eng},
  issn={1091-6490},
  volume={121},
  note={Gesehen am 25.11.2024},
  journal={Proceedings of the National Academy of Sciences of the United States of America},
  doi={10.1073/pnas.2312330121},
}
@article{UBHD-68303101,
  author={Malone, Brandon and Dieterich, Christoph},
  title={Bayesian prediction of RNA translation from ribosome profiling},
  year={2017},
  pages={2960-2972},
  language={eng},
  issn={1362-4962},
  volume={45},
  number={6},
  note={Gesehen am 07.09.2018},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkw1350},
}
@article{UBHD-68309697,
  author={Metge, Franziska and Dieterich, Christoph},
  title={FUCHS - towards full circular RNA characterization using RNAseq},
  year={2017},
  pages={14 S.},
  language={eng},
  issn={2167-8359},
  volume={5},
  number={Artikel-ID e2934},
  note={Gesehen am 27.09.2018},
  journal={PeerJ},
  doi={10.7717/peerj.2934},
}
@article{UBHD-68315898,
  author={Meyer, S{\"o}ren and Jungmann, Andreas and Dieterich, Christoph and Zhang, Min and Lasitschka, Felix and Werkmeister, Susann and Haas, Jan and M{\"u}ller, Oliver J. and Boutros, Michael and Nahrendorf, Matthias and Katus, Hugo and Hardt, Stefan and Leuschner, Florian},
  title={The cardiac microenvironment uses non‐canonical WNT signaling to activate monocytes after myocardial infarction},
  year={2017},
  pages={1279-1293},
  language={eng},
  issn={1757-4684},
  volume={9},
  number={9},
  note={Published online August 3, 2017 ; Gesehen am 16.10.2018},
  journal={EMBO molecular medicine},
  doi={10.15252/emmm.201707565},
}
@article{UBHD-69292476,
  author={Morandell, Jasmin and Monziani, Alan and Lazioli, Martina and Donzel, Deborah and D{\"o}ring, Jessica and Oss Pegorar, Claudio and D’Anzi, Angela and Pellegrini, Miguel and Mattiello, Andrea and Bortolotti, Dalia and Bergonzoni, Guendalina and Tripathi, Takshashila and Mattis, Virginia B. and Kovalenko, Marina and Rosati, Jessica and Dieterich, Christoph and Dassi, Erik and Wheeler, Vanessa C. and Ellederová, Zdenka and Wilusz, Jeremy E. and Viero, Gabriella and Biagioli, Marta},
  title={CircHTT(2,3,4,5,6) - co-evolving with the HTT CAG-repeat tract},
  subtitle={modulates Huntington's disease phenotypes},
  year={2024},
  pages={1-21},
  language={eng},
  issn={2162-2531},
  volume={35},
  note={Gesehen am 20.01.2025 ; Online verf{\"u}gbar 3 June 2024, Version des Artikels 14 June 2024},
  journal={Molecular therapy},
  doi={10.1016/j.omtn.2024.102234},
}
@article{UBHD-68704934,
  author={M{\"u}ller, Torsten and Boileau, Etienne and Talyan, Sweta and Kehr, Dorothea and Varadi, Karl and Busch, Martin and Most, Patrick and Krijgsveld, Jeroen and Dieterich, Christoph},
  title={Updated and enhanced pig cardiac transcriptome based on long-read RNA sequencing and proteomics},
  year={2021},
  pages={23-31},
  language={eng},
  issn={1095-8584},
  volume={150},
  note={Available online 10 October 2020 ; Gesehen am 01.03.2021},
  journal={Journal of molecular and cellular cardiology},
  doi={10.1016/j.yjmcc.2020.10.005},
}
@article{UBHD-69185045,
  author={Naarmann-de Vries, Isabel S. and Gjerga, Enio and Gandor, Catharina L. A. and Dieterich, Christoph},
  title={Adaptive sampling for nanopore direct RNA-sequencing},
  year={2023},
  pages={1939-1949},
  language={eng},
  issn={1469-9001},
  volume={29},
  number={12},
  note={Gesehen am 23.02.2024},
  journal={RNA},
  doi={10.1261/rna.079727.123},
}
@article{UBHD-69147838,
  author={Naarmann-de Vries, Isabel S. and Zorbas, Christiane and Lemsara, Amina and Piechotta, Michael and Ernst, Felix Georg Maria and Wacheul, Ludivine and Lafontaine, Denis L. J. and Dieterich, Christoph},
  title={Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2},
  year={2023},
  pages={652-665},
  language={eng},
  issn={1555-8584},
  volume={20},
  number={1},
  note={Gesehen am 29.11.2023},
  journal={RNA biology},
  doi={10.1080/15476286.2023.2248752},
}
@article{UBHD-68938230,
  author={Naarmann-de Vries, Isabel S. and Eschenbach, Jessica and Dieterich, Christoph},
  title={Improved nanopore direct RNA sequencing of cardiac myocyte samples by selective mt-RNA depletion},
  year={2022},
  pages={175-186},
  language={eng},
  issn={1095-8584},
  volume={163},
  note={Available online 3 November 2021 ; Gesehen am 06.07.2022},
  journal={Journal of molecular and cellular cardiology},
  doi={10.1016/j.yjmcc.2021.10.010},
}
@article{UBHD-68965646,
  author={Naarmann-de Vries, Isabel S. and Eschenbach, Jessica and Schudy, Sarah and Meder, Benjamin and Dieterich, Christoph},
  title={Targeted analysis of circRNA expression in patient samples by lexo-circSeq},
  year={2022},
  pages={1-10},
  language={eng},
  issn={2296-889X},
  volume={9(2022) vom: Aug.},
  number={Artikel-ID 875805},
  note={Gesehen am 20.09.2022},
  journal={Frontiers in molecular biosciences},
  doi={10.3389/fmolb.2022.875805},
  url={https://doi.org/10.3389/fmolb.2022.875805},
  library={UB},
}
@article{UBHD-68495549,
  author={Nakamura, Shuhei and Karalay, {\"O}zlem and J{\"a}ger, Philipp S. and Horikawa, Makoto and Klein, Corinna and Nakamura, Kayo and Latza, Christian and Templer, Sven E. and Dieterich, Christoph and Antebi, Adam},
  title={Mondo complexes regulate TFEB via TOR inhibition to promote longevity in response to gonadal signals},
  year={2016},
  language={eng},
  issn={2041-1723},
  volume={7(2016) Artikel-Nummer 10944},
  number={15 Seiten},
  note={Gesehen am 03.03.2020},
  journal={Nature Communications},
  doi={10.1038/ncomms10944},
}
@article{UBHD-68591628,
  author={Noormohammadi, Alireza and Khodakarami, Amirabbas and Gutierrez-Garcia, Ricardo and Lee, Hyun Ju and Koyuncu, Seda and K{\"o}nig, Tim and Schindler, Christina and Saez, Isabel and Fatima, Azra and Dieterich, Christoph and Vilchez, David},
  title={Somatic increase of CCT8 mimics proteostasis of human pluripotent stem cells and extends C. elegans lifespan},
  year={2016},
  pages={15 S.},
  language={eng},
  issn={2041-1723},
  volume={7(2016) Artikel-Nummer 13649},
  number={15 Seiten},
  note={Gesehen am 26.06.2020},
  journal={Nature Communications},
  doi={10.1038/ncomms13649},
}
@article{UBHD-69188071,
  author={Patel, Areeba and Kardo, Helin and Payne, Alexander and Krause, Elena and Sievers, Philipp and Schoebe, Natalie and Schrimpf, Daniel and Blume, Christina and Stichel, Damian and Holmes, Nadine and Euskirchen, Philipp and Hench, J{\"u}rgen and Frank, Stephan and Goidts, Violaine and Ratliff, Miriam and Etminan, Nima and Unterberg, Andreas and Dieterich, Christoph and Herold-Mende, Christel and Pfister, Stefan and Wick, Wolfgang and Loose, Matthew and Deimling, Andreas von and Sill, Martin and Jones, David T. W. and Schlesner, Matthias and Sahm, Felix},
  title={Rapid-CNS2: rapid comprehensive adaptive nanopore-sequencing of CNS tumors, a proof-of-concept study},
  subtitle={correspondence},
  year={2022},
  pages={609-612},
  language={eng},
  issn={1432-0533},
  volume={143},
  number={5},
  note={Gesehen am 05.03.2024},
  journal={Acta neuropathologica},
  doi={10.1007/s00401-022-02415-6},
}
@article{UBHD-68388682,
  author={Pedrosa da Costa Gomes, Clarissa and Dieterich, Christoph},
  title={Circular RNAs in the cardiovascular system},
  year={2018},
  pages={1-11},
  language={eng},
  issn={2468-0540},
  volume={3},
  number={1},
  note={Gesehen am 10.05.2019},
  journal={Non-coding RNA research},
  doi={10.1016/j.ncrna.2018.02.002},
}
@book{UBHD-68073033,
  author={Piechotta, Michael and Dieterich, Christoph},
  title={JACUSA},
  subtitle={site-specific identification of RNA editing events from replicate sequencing data},
  publisher={BioMed Central; Springer},
  address={London; Berlin; Heidelberg},
  year={2017},
  pages={1 Online-Ressource (15 Seiten)},
  language={eng},
  note={Aus: BMC Bioinformatics, 18 (2017), Nr. 7. pp. 1-15. ISSN 1471-2105},
  doi={10.1186/s12859-016-1432-8},
  url={https://nbn-resolving.org/urn:nbn:de:bsz:16-heidok-224417},
  library={UB},
}
@article{UBHD-68934365,
  author={Piechotta, Michael and Naarmann-de Vries, Isabel S. and Wang, Qi and Altm{\"u}ller, Janine and Dieterich, Christoph},
  title={RNA modification mapping with JACUSA2},
  year={2022},
  pages={1-11},
  language={eng},
  issn={1474-760X},
  volume={23},
  number={Artikel-ID 115},
  note={Gesehen am 24.06.2022},
  journal={Genome biology},
  doi={10.1186/s13059-022-02676-0},
  url={https://doi.org/10.1186/s13059-022-02676-0},
  library={UB},
}
@article{UBHD-68560622,
  author={Pradas-Juni, Marta and Hansmeier, Nils R. and Link, Jenny C. and Schmidt, Elena and Larsen, Bjørk Ditlev and Klemm, Paul and Meola, Nicola and Topel, Hande and Loureiro, Rute and Dhaouadi, Ines and Kiefer, Christoph A. and Schwarzer, Robin and Khani, Sajjad and Oliverio, Matteo and Awazawa, Motoharu and Frommolt, Peter and Heeren, Joerg and Scheja, Ludger and Heine, Markus and Dieterich, Christoph and B{\"u}ning, Hildegard and Yang, Ling and Cao, Haiming and Jesus, Dario F. De and Kulkarni, Rohit N. and Zevnik, Branko and Tr{\"o}der, Simon E. and Knippschild, Uwe and Edwards, Peter A. and Lee, Richard G. and Yamamoto, Masayuki and Ulitsky, Igor and Fernandez-Rebollo, Eduardo and Vallim, Thomas Q. de Aguiar and Kornfeld, Jan-Wilhelm},
  title={A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism},
  year={2020},
  pages={17 S.},
  language={eng},
  issn={2041-1723},
  volume={11(2020) Artikel-Nummer 644},
  number={17 Seiten},
  note={Gesehen am 02.04.2020},
  journal={Nature Communications},
  doi={10.1038/s41467-020-14323-y},
}
@article{UBHD-69307507,
  author={Rabolli, Charles and Naarmann-de Vries, Isabel S. and Makarewich, Catherine A. and Baskin, Kedryn K. and Dieterich, Christoph and Accornero, Federica},
  title={Nanopore detection of METTL3-dependent m6A-modified mRNA reveals a new mechanism regulating cardiomyocyte mitochondrial metabolism},
  year={2024},
  pages={1319-1322},
  language={eng},
  issn={1524-4539},
  volume={149},
  number={16 vom: Apr.},
  note={Zuerst ver{\"o}ffentlicht: 15. April 2024 ; Gesehen am 24.02.2025},
  journal={Circulation},
  doi={10.1161/CIRCULATIONAHA.123.066473},
}
@article{UBHD-68868356,
  author={Radke, Michael and Badillo-Lisakowski, Victor and Britto-Borges, Thiago and Kubli, Dieter A. and J{\"u}ttner, René and Parakkat, Pragati and Carballo, Jacobo Lopez and H{\"u}ttemeister, Judith and Liss, Martin and Hansen, Arne and Dieterich, Christoph and Mullick, Adam E. and Gotthardt, Michael},
  title={Therapeutic inhibition of RBM20 improves diastolic function in a murine heart failure model and human engineered heart tissue},
  year={2021},
  pages={1-11},
  language={eng},
  issn={1946-6242},
  volume={13},
  note={Gesehen am 19.01.2022},
  journal={Science translational medicine},
  doi={10.1126/scitranslmed.abe8952},
}
@article{UBHD-68992720,
  author={Rajcsanyi, Luisa Sophie and Diebels, Inga and Pastoors, Lydia and Kanber, Deniz and Peters, Triinu and Volckmar, Anna-Lena and Zheng, Yiran and Grosse, Martin and Dieterich, Christoph and Hebebrand, Johannes and Kaiser, Frank and Horsthemke, Bernhard and Hinney, Anke},
  title={Evidence for correlations between BMI-associated SNPs and circRNAs},
  year={2022},
  pages={1-13},
  language={eng},
  issn={2045-2322},
  volume={12},
  number={Artikel-ID 12643},
  note={Gesehen am 05.12.2022},
  journal={Scientific reports},
  doi={10.1038/s41598-022-16495-7},
}
@article{UBHD-68333451,
  author={Rajman, Marek and Metge, Franziska and Dieterich, Christoph},
  title={A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses},
  year={2017},
  pages={1770-1787},
  language={eng},
  issn={1460-2075},
  volume={36},
  number={12},
  note={Gesehen am 28.11.2018},
  journal={The EMBO journal},
  doi={10.15252/embj.201695748},
}
@article{UBHD-68864996,
  author={Richter-Pechanski, Phillip and Geis, Nicolas and Kiriakou, Christina and Schwab, Dominic Mathias and Dieterich, Christoph},
  title={Automatic extraction of 12 cardiovascular concepts from German discharge letters using pre-trained language models},
  subtitle={$hPhillip Richter-Pechanski, Nicolas A Geis, Christina Kiriakou, Dominic M Schwab and Christoph Dieterich},
  year={2021},
  pages={1-10},
  language={eng},
  issn={2055-2076},
  volume={7},
  number={Artikel-ID 20552076211057662},
  note={Gesehen am 12.01.2022},
  journal={Digital health},
  doi={10.1177/20552076211057662},
  url={https://doi.org/10.1177/20552076211057662},
  library={UB},
}
@article{UBHD-69327359,
  author={Richter-Pechanski, Phillip and Wiesenbach, Philipp and Schwab, Dominic Mathias and Kiriakou, Christina and Geis, Nicolas and Dieterich, Christoph and Frank, Anette},
  title={Clinical information extraction for lower-resource languages and domains with few-shot learning using pretrained language models and prompting},
  year={2024},
  pages={1-24},
  language={eng},
  issn={2977-0424},
  note={Gesehen am 02.04.2025},
  journal={Natural language processing},
  doi={10.1017/nlp.2024.52},
}
@incollection{UBHD-68487106,
  author={Richter-Pechanski, Phillip and Riezler, Stefan and Dieterich, Christoph},
  title={De-Identification of German medical admission notes},
  year={2018},
  pages={165-169},
  language={eng},
  isbn={9781614998969},
  note={Gesehen am 10.02.2020},
  booktitle={German medical data sciences},
  editor={H{\"u}bner, Ursula},
  doi={10.3233/978-1-61499-896-9-165},
}
@article{UBHD-69084880,
  author={Richter-Pechanski, Phillip and Wiesenbach, Philipp and Schwab, Dominic Mathias and Kiriakou, Christina and He, Mingyang and Allers, Michael M. and Tiefenbacher, Anna S. and Kunz, Nicola and Martynova, Anna and Spiller, Noemie and Mierisch, Julian and Borchert, Florian and Schwind, Charlotte and Frey, Norbert and Dieterich, Christoph and Geis, Nicolas},
  title={A distributable German clinical corpus containing cardiovascular clinical routine doctor’s letters},
  year={2023},
  pages={1-16},
  language={eng},
  issn={2052-4463},
  volume={10(2023) vom: Apr.},
  number={Artikel-ID 207},
  note={Gesehen am 13.06.2023},
  journal={Scientific data},
  doi={10.1038/s41597-023-02128-9},
  url={https://doi.org/10.1038/s41597-023-02128-9},
  library={UB},
}
@article{UBHD-68295687,
  author={Roehr, Johannes and Dieterich, Christoph and Reinert, Knut},
  title={Flexbar 3.0},
  subtitle={SIMD and multicore parallelization},
  year={2017},
  pages={2941-2942},
  language={eng},
  issn={1367-4811 and 1460-2059},
  volume={33},
  number={18},
  note={Gesehen am 15.08.2018},
  journal={Bioinformatics},
  doi={10.1093/bioinformatics/btx330},
}
@article{UBHD-68388750,
  author={Saez, Isabel and Dieterich, Christoph},
  title={Insights into the ubiquitin-proteasome system of human embryonic stem cells},
  year={2018},
  language={eng},
  issn={2045-2322},
  volume={8(2018) Artikel-Nummer 4092},
  number={21 Seiten},
  note={Gesehen am 10.05.2019},
  journal={Scientific reports},
  doi={10.1038/s41598-018-22384-9},
}
@article{UBHD-69256232,
  author={Schlautmann, Lena P. and Lackmann, Jan-Wilm and Altm{\"u}ller, Janine and Dieterich, Christoph and B{\"o}hm, Volker and Gehring, Niels H.},
  title={Exon junction complex-associated multi-adapter RNPS1 nucleates splicing regulatory complexes to maintain transcriptome surveillance},
  year={2022},
  pages={5899-5918},
  language={eng},
  issn={1362-4962},
  volume={50},
  number={10},
  note={Gesehen am 25.09.2024},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkac428},
}
@article{UBHD-68199959,
  author={Sedaghat-Hamedani, Farbod and Haas, Jan and Feng, Zhu and Kayvanpour, Elham and Lai, Chung Lun Alan and Frese, Karen S. and Pribe-Wolferts, Regina and Amr, Ali and Li, Daniel Tian and Shirvani-Samani, Omid and Carstensen, Avisha and Martins Bordalo, Diana and M{\"u}ller, Marion and Fischer, Christine and Ehlermann, Philipp and Dieterich, Christoph and Katus, Hugo and Meder, Benjamin},
  title={Clinical genetics and outcome of left ventricular non-compaction cardiomyopathy},
  year={2017},
  pages={3449-3460},
  language={eng},
  issn={1522-9645},
  volume={38},
  number={46},
  note={Gesehen am 11.12.2017},
  journal={European heart journal},
  doi={10.1093/eurheartj/ehx545},
}
@article{UBHD-68295696,
  author={Siede, Dominik and Rapti, Kleopatra and Górska, Aga and Katus, Hugo and Boeckel, Jes-Niels and Meder, Benjamin and V{\"o}lkers, Mirko and M{\"u}ller, Oliver J. and Backs, Jana and Dieterich, Christoph},
  title={Identification of circular RNAs with host gene-independent expression in human model systems for cardiac differentiation and disease},
  year={2017},
  pages={48-56},
  language={eng},
  issn={1095-8584},
  volume={109},
  note={Gesehen am 15.08.2018},
  journal={Journal of molecular and cellular cardiology},
  doi={10.1016/j.yjmcc.2017.06.015},
}
@article{UBHD-68945269,
  author={Sommer, Kim K. and Amr, Ali and Bavendiek, Udo and Beierle, Felix and Brunecker, Peter and Dathe, Henning and Eils, J{\"u}rgen and Ertl, Maximilian and Fette, Georg and Gietzelt, Matthias and Heidecker, Bettina and Hellenkamp, Kristian and Heuschmann, Peter and Hoos, Jennifer D. E. and Keszty{\"u}s, Tibor and Kerwagen, Fabian and Kindermann, Aljoscha and Krefting, Dagmar and Landmesser, Ulf and Marschollek, Michael and Meder, Benjamin and Merzweiler, Angela and Prasser, Fabian and Pryss, R{\"u}diger and Richter, Jendrik and Schneider, Philipp and St{\"o}rk, Stefan and Dieterich, Christoph},
  title={Structured, harmonized, and interoperable integration of clinical routine data to compute heart failure risk scores},
  year={2022},
  pages={1-18},
  language={eng},
  issn={2075-1729},
  volume={12},
  note={Gesehen am 21.07.2022 ; This article belongs to the special issue "Computational analysis of biomedical data"},
  journal={Life},
  doi={10.3390/life12050749},
}
@article{UBHD-69146467,
  author={Sun, Yu and Piechotta, Michael and Naarmann-de Vries, Isabel S. and Dieterich, Christoph and Ehrenhofer-Murray, Ann E},
  title={Detection of queuosine and queuosine precursors in tRNAs by direct RNA sequencing},
  year={2023},
  pages={11197-11212},
  language={eng},
  issn={1362-4962},
  volume={51},
  number={20 vom: Nov.},
  note={Online vorab ver{\"o}ffentlicht: 9. Oktober 2023 ; Gesehen am 27.11.2023},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkad826},
}
@article{UBHD-68568700,
  author={Tain, Luke S. and Sehlke, Robert and Jain, Chirag and Chokkalingam, Manopriya and Nagaraj, Nagarjuna and Essers, Paul and Rassner, Mark and Gr{\"o}nke, Sebastian and Froelich, Jenny and Dieterich, Christoph and Mann, Matthias and Alic, Nazif and Beyer, Andreas and Partridge, Linda},
  title={A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance},
  year={2017},
  pages={19 S.},
  language={eng},
  issn={1744-4292},
  volume={13(2017},
  note={Gesehen am 21.04.2020},
  journal={Molecular systems biology},
  doi={10.15252/msb.20177663},
}
@article{UBHD-69197586,
  author={Trendel, Jakob and Boileau, Etienne and Jochem, Marco and Dieterich, Christoph and Krijgsveld, Jeroen},
  title={PEPseq quantifies transcriptome-wide changes in protein occupancy and reveals selective translational repression after translational stress},
  year={2023},
  pages={1-20},
  language={eng},
  issn={1362-4962},
  volume={51},
  number={14},
  note={Online ver{\"o}ffentlicht: 3. Juli 2023 ; Gesehen am 04.04.2024},
  journal={Nucleic acids research},
  doi={10.1093/nar/gkad557},
}
@article{UBHD-69268553,
  author={Tsvilovskyy, Volodymyr and Ottenheijm, Roger and Kriebs, Ulrich and Sch{\"u}tz, Aline and Diakopoulos, Kalliope Nina and Jha, Archana and Bildl, Wolfgang and Wirth, Angela and B{\"o}ck, Julia and Jaślan, Dawid and Ferro, Irene and Taberner, Francisco J. and Kalinina, Olga and Hildebrand, Staffan and Wissenbach, Ulrich and Weißgerber, Petra and Vogt, Dominik and Eberhagen, Carola and Mannebach, Stefanie and Berlin, Michael and Kuryshev, Vladimir and Schumacher, Dagmar and Philippaert, Koenraad and Camacho Londoño, Juan Eduardo and Mathar, Ilka and Dieterich, Christoph and Klugbauer, Norbert and Biel, Martin and Wahl-Schott, Christian and Lipp, Peter and Flockerzi, Veit and Zischka, Hans and Alg{\"u}l, Hana and Lechner, Stefan and Lesina, Marina and Grimm, Christian and Fakler, Bernd and Schulte, Uwe and Muallem, Shmuel and Freichel, Marc},
  title={OCaR1 endows exocytic vesicles with autoregulatory competence by preventing uncontrolled Ca2+ release, exocytosis, and pancreatic tissue damage},
  year={2024},
  pages={1-15},
  language={eng},
  issn={1558-8238},
  volume={134},
  note={Enth{\"a}lt eine ungez{\"a}hlte Seite "Graphic abstract" ; Online ver{\"o}ffentlicht: 1. April 2024 ; Im Titel ist 2+ hochgestellt ; Gesehen am 30.10.2024},
  journal={The journal of clinical investigation},
  doi={10.1172/JCI169428},
}
@article{UBHD-68467278,
  author={Uvarovskii, Alexey and Naarmann-de Vries, Isabel S. and Dieterich, Christoph},
  title={On the optimal design of metabolic RNA labeling experiments},
  year={2019},
  pages={22 S.},
  language={eng},
  issn={1553-7358},
  volume={15(2019},
  note={Gesehen am 10.12.2019},
  journal={PLoS Computational Biology},
  doi={10.1371/journal.pcbi.1007252},
}
@article{UBHD-68299612,
  author={Uvarovskii, Alexey and Dieterich, Christoph},
  title={pulseR},
  subtitle={versatile computational analysis of RNA turnover from metabolic labeling experiments},
  year={2017},
  pages={3305-3307},
  language={eng},
  issn={1367-4811 and 1460-2059},
  volume={33},
  number={20},
  note={Gesehen am 28.08.2018 ; Advance Access Publication Date: 24 June 2017},
  journal={Bioinformatics},
  doi={10.1093/bioinformatics/btx368},
}
@article{UBHD-68794750,
  author={Wagner, Julian Uwe Gabriel and Bojkova, Denisa and Shumliakivska, Mariana and Luxán, Guillermo and Nicin, Luka and Aslan, Galip S. and Milting, Hendrik and Kandler, Joshua D. and Dendorfer, Andreas and Heumueller, Andreas W. and Fleming, Ingrid and Bibli, Sofia-Iris and Jakobi, Tobias and Dieterich, Christoph and Zeiher, Andreas M. and Ciesek, Sandra and Cinatl, Jindrich and Dimmeler, Stefanie},
  title={Increased susceptibility of human endothelial cells to infections by SARS-CoV-2 variants},
  year={2021},
  pages={1-12},
  language={eng},
  issn={1435-1803},
  volume={116},
  number={Artikel-ID 42},
  note={Gesehen am 28.10.2021},
  journal={Basic research in cardiology},
  doi={10.1007/s00395-021-00882-8},
}
@article{UBHD-69345197,
  author={Wagner, Rebecca E. and Arnetzl, Leonie and Britto-Borges, Thiago and Heit-Mondrzyk, Anke and Bakr, Ali and Sollier, Etienne and Gkatza, Nikoletta A. and Panten, Jasper and Delaunay, Sylvain and Sohn, Daniela and Schmezer, Peter and Odom, Duncan T. and M{\"u}ller-Decker, Karin and Plass, Christoph and Dieterich, Christoph and Lutsik, Pavlo and Bornel{\"o}v, Susanne and Frye, Michaela},
  title={SRSF2 safeguards efficient transcription of DNA damage and repair genes},
  year={2024},
  pages={1-26},
  language={eng},
  issn={2211-1247},
  volume={43},
  note={Online verf{\"u}gbar: 23. Oktober 2024, Artikelversion: 23. Oktober 2024 ; Gesehen am 15.05.2025},
  journal={Cell reports},
  doi={10.1016/j.celrep.2024.114869},
}
@article{UBHD-69254368,
  author={Wallmeroth, Damaris and Lackmann, Jan-Wilm and Kueckelmann, Sabrina and Altm{\"u}ller, Janine and Dieterich, Christoph and B{\"o}hm, Volker and Gehring, Niels H.},
  title={Human UPF3A and UPF3B enable fault‐tolerant activation of nonsense‐mediated mRNA decay},
  year={2022},
  pages={1-23},
  language={eng},
  issn={1460-2075},
  volume={41},
  note={Gesehen am 18.09.2024},
  journal={The EMBO journal},
  doi={10.15252/embj.2021109191},
}
@article{UBHD-68792639,
  author={Wang, Qi and B{\"o}nigk, Sven and B{\"o}hm, Volker and Gehring, Niels H. and Altm{\"u}ller, Janine and Dieterich, Christoph},
  title={Single-cell transcriptome sequencing on the Nanopore platform with ScNapBar},
  year={2021},
  pages={763-770},
  language={eng},
  issn={1469-9001},
  volume={27},
  number={7},
  note={Gesehen am 22.10.2021},
  journal={RNA},
  doi={10.1261/rna.078154.120},
}
@article{UBHD-68652821,
  author={Weichmann, Franziska and Dieterich, Christoph and Hett, Robert and Schepers, Aloys and Ito-Kureha, Taku and Flatley, Andrew and Slama, Kaouthar and Hastert, Florian D and Angstman, Nicholas B and Cardoso, M Cristina and K{\"o}nig, Julian and H{\"u}ttelmaier, Stefan and Canzar, Stefan and Helm, Mark and Heissmeyer, Vigo and Feederle, Regina and Meister, Gunter},
  title={Validation strategies for antibodies targeting modified ribonucleotides},
  year={2020},
  pages={1489-1506},
  language={eng},
  issn={1469-9001},
  volume={26},
  number={10},
  note={Gesehen am 22.10.2020},
  journal={RNA},
  doi={10.1261/rna.076026.120},
}
@article{UBHD-68666057,
  author={Weigelt, Carina Marianne and Sehgal, Rohan and Tain, Luke Stephen and Cheng, Jun and Esser, Jacqueline and Pahl, Andre and Dieterich, Christoph and Groenke, Sebastian and Partridge, Linda},
  title={An insulin-sensitive circular RNA that regulates lifespan in drosophila},
  year={2020},
  pages={268-279},
  language={eng},
  issn={1097-4164},
  volume={79},
  number={2},
  note={Gesehen am 26.11.2020},
  journal={Molecular cell},
  doi={10.1016/j.molcel.2020.06.011},
}
@incollection{UBHD-68569959,
  author={Worpenberg, Lina and Jakobi, Tobias and Dieterich, Christoph},
  title={Identification of methylated transcripts using the TRIBE approach},
  year={2019},
  pages={89-106},
  language={eng},
  isbn={978-1-4939-8808-2},
  note={First online: 12 December 2018 ; Gesehen am 24.04.2020},
  booktitle={Epitranscriptomics},
  editor={Wajapeyee, Narendra and Gupta, Romi},
  doi={10.1007/978-1-4939-8808-2_7},
}
@article{UBHD-68734730,
  author={Worpenberg, Lina and Paolantoni, Chiara and Longhi, Sara and Mulorz, Miriam M and Lence, Tina and Wessels, Hans-Hermann and Dassi, Erik and Aiello, Giuseppe and Sutandy, F X Reymond and Scheibe, Marion and Edupuganti, Raghu R and Busch, Anke and M{\"o}ckel, Martin M and Vermeulen, Michiel and Butter, Falk and K{\"o}nig, Julian and Notarangelo, Michela and Ohler, Uwe and Dieterich, Christoph and Quattrone, Alessandro and Soldano, Alessia and Roignant, Jean-Yves},
  title={Ythdf is a N6-methyladenosine reader that modulates Fmr1 target mRNA selection and restricts axonal growth in Drosophila},
  year={2021},
  pages={1-20},
  language={eng},
  issn={1460-2075},
  volume={40},
  note={Gesehen am 06.05.2021},
  journal={The EMBO journal},
  doi={10.15252/embj.2020104975},
}
@article{UBHD-68484611,
  author={Zhou, Yifei and Wang, Xueqing and Song, Mengjiao and He, Zhidong and Cui, Guizhong and Peng, Guangdun and Dieterich, Christoph and Antebi, Adam and Jing, Naihe and Shen, Yidong},
  title={A secreted microRNA disrupts autophagy in distinct tissues of Caenorhabditis elegans upon ageing},
  year={2019},
  pages={14 S.},
  language={eng},
  issn={2041-1723},
  volume={10(2019) Article number: 4827},
  number={14 Seiten},
  note={Gesehen am 04.02.2020},
  journal={Nature Communications},
  doi={10.1038/s41467-019-12821-2},
}