COPASI and its applications in biotechnology

• Verfasst von: Bergmann, Frank T. [VerfasserIn]
• Verfasst von: Kummer, Ursula [VerfasserIn]
• Verfasst von: Pahle, Jürgen [VerfasserIn]
• Verfasst von: Sahle, Sven [VerfasserIn]
• Titel: COPASI and its applications in biotechnology
• Verf.angabe: Frank T. Bergmann, Stefan Hoops, Brian Klahn, Ursula Kummer, Pedro Mendes, Jürgen Pahle, Sven Sahle
• E-Jahr: 2017
• Jahr: 24 June 2017
• Umfang: 6 S.
• Fussnoten: Gesehen am 09.05.2018
• Titel Quelle: Enthalten in: Journal of biotechnology
• Ort Quelle: Amsterdam [u.a.] : Elsevier Science, 1984
• Jahr Quelle: 2017
• Band/Heft Quelle: 261(2017), Seite 215-220
• ISSN Quelle: 1873-4863
• DOI: doi:10.1016/j.jbiotec.2017.06.1200
• Datenträger: Online-Ressource
• Sprache: eng
• Sach-SW: Biotechnology
• Sach-SW: COPASI
• Sach-SW: Systems biology
• K10plus-PPN: 1574302906

Abstract

COPASI is software used for the creation, modification, simulation and computational analysis of kinetic models in various fields. It is open-source, available for all major platforms and provides a user-friendly graphical user interface, but is also controllable via the command line and scripting languages. These are likely reasons for its wide acceptance. We begin this review with a short introduction describing the general approaches and techniques used in computational modeling in the biosciences. Next we introduce the COPASI package, and its capabilities, before looking at typical applications of COPASI in biotechnology.