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Verfasst von:Chang, Yu-Tien [VerfasserIn]   i
 Wetter, Thomas [VerfasserIn]   i
Titel:Verification of gene expression profiles for colorectal cancer using 12 internet public microarray datasets
Verf.angabe:Yu-Tien Chang, Chung-Tay Yao, Sui-Lung Su, Yu-Ching Chou, Chi-Ming Chu, Chi-Shuan Huang, Harn-Jing Terng, Hsiu-Ling Chou, Thomas Wetter, Kang-Hua Chen, Chi-Wen Chang, Yun-Wen Shih, Ching-Huang Lai
E-Jahr:2014
Jahr:Dec 14, 2014
Umfang:7 S.
Fussnoten:twelve ; Gesehen am 16.10.2020
Titel Quelle:Enthalten in: World journal of gastroenterology
Ort Quelle:Beijing : WJG Press, 1995
Jahr Quelle:2014
Band/Heft Quelle:20(2014), 46, Seite 17476-17482
ISSN Quelle:2219-2840
Abstract:AIM: To verify gene expression profiles for colorectal cancer using 12 internet public microarray datasets. METHODS: Logistic regression analysis was performed, and odds ratios for each gene were determined between colorectal cancer (CRC) and controls. Twelve public microarray datasets of GSE 4107, 4183, 8671, 9348, 10961, 13067, 13294, 13471, 14333, 15960, 17538, and 18105, which included 519 cases of adenocarcinoma and 88 normal mucosa controls, were pooled and used to verify 17 selective genes from 3 published studies and estimate the external generality. RESULTS: We validated the 17 CRC-associated genes from studies by Chang et al (Model 1: 5 genes), Marshall et al (Model 2: 7 genes) and Han et al (Model 3: 5 genes) and performed the multivariate logistic regression analysis using the pooled 12 public microarray datasets as well as the external validation. The goodness-of-fit test of Hosmer-Lemeshow (H-L) showed statistical significance (P = 0.044) for Model 2 of Marshall et al in which observed event rates did not match expected event rates in subgroups of the model population. Expected and observed event rates in subgroups were similar, which are called well calibrated, in Models 1, 3 and 4 with non-significant P values of 0.460, 0.194 and 1.000 for H-L tests, respectively. A 7-gene model of CPEB4, EIF2S3, MGC20553, MS4A1, ANXA3, TNFAIP6 and IL2RB was pairwise selected, which showed the best results in logistic regression analysis (H-L P = 1.000, R2 = 0.951, areas under the curve = 0.999, accuracy = 0.968, specificity = 0.966 and sensitivity = 0.994). CONCLUSION: A novel gene expression profile was associated with CRC and can potentially be applied to blood-based detection assays.
DOI:doi:10.3748/wjg.v20.i46.17476
URL:Bitte beachten Sie: Dies ist ein Bibliographieeintrag. Ein Volltextzugriff für Mitglieder der Universität besteht hier nur, falls für die entsprechende Zeitschrift/den entsprechenden Sammelband ein Abonnement besteht oder es sich um einen OpenAccess-Titel handelt.

Volltext: https://doi.org/10.3748/wjg.v20.i46.17476
 Volltext: https://www.wjgnet.com/1007-9327/full/v20/i46/17476.htm
 DOI: https://doi.org/10.3748/wjg.v20.i46.17476
Datenträger:Online-Ressource
Sprache:eng
K10plus-PPN:1735730386
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