Brain tumor classification of virtual NMR voxels based on realistic blood vessel-induced spin dephasing using support vector machines

• Verfasst von: Hahn, Artur [VerfasserIn]
• Verfasst von: Krüwel-Bode, Julia [VerfasserIn]
• Verfasst von: Schuhegger, Sarah [VerfasserIn]
• Verfasst von: Krüwel, Thomas [VerfasserIn]
• Verfasst von: Sturm, Volker Jörg Friedrich [VerfasserIn]
• Verfasst von: Zhang, Ke [VerfasserIn]
• Verfasst von: Jende, Johann [VerfasserIn]
• Verfasst von: Tews, Björn [VerfasserIn]
• Verfasst von: Heiland, Sabine [VerfasserIn]
• Verfasst von: Bendszus, Martin [VerfasserIn]
• Verfasst von: Breckwoldt, Michael O. [VerfasserIn]
• Verfasst von: Ziener, Christian H. [VerfasserIn]
• Verfasst von: Kurz, Felix T. [VerfasserIn]
• Titel: Brain tumor classification of virtual NMR voxels based on realistic blood vessel-induced spin dephasing using support vector machines
• Verf.angabe: Artur Hahn, Julia Bode, Sarah Schuhegger, Thomas Krüwel, Volker J.F. Sturm, Ke Zhang, Johann M.E. Jende, Björn Tews, Sabine Heiland, Martin Bendszus, Michael O. Breckwoldt, Christian H. Ziener, Felix T. Kurz
• E-Jahr: 2020
• Jahr: 14 April 2020
• Umfang: 17 S.
• Fussnoten: Gesehen am 12.08.2021
• Titel Quelle: Enthalten in: NMR in biomedicine
• Ort Quelle: New York, NY : Wiley, 1988
• Jahr Quelle: 2020
• Band/Heft Quelle: (2020), Artikel-ID e4307$nSpecial issue, Seite 1-17
• ISSN Quelle: 1099-1492
• DOI: doi:10.1002/nbm.4307
• Datenträger: Online-Ressource
• Sprache: eng
• Sach-SW: angiogenesis
• Sach-SW: glioblastoma multiforme
• Sach-SW: machine learning
• Sach-SW: microvasculature
• Sach-SW: signal classification
• Sach-SW: spin dephasing
• Sach-SW: support vector machines
• Sach-SW: vascular pathology
• K10plus-PPN: 1766718817
• K10plus-PPN:
  Universitätsbibliothek
• Lokale URL UB: Zum Volltext

Abstract

Remodeling of tissue microvasculature commonly promotes neoplastic growth; however, there is no imaging modality in oncology yet that noninvasively quantifies microvascular changes in clinical routine. Although blood capillaries cannot be resolved in typical magnetic resonance imaging (MRI) measurements, their geometry and distribution influence the integral nuclear magnetic resonance (NMR) signal from each macroscopic MRI voxel. We have numerically simulated the expected transverse relaxation in NMR voxels with different dimensions based on the realistic microvasculature in healthy and tumor-bearing mouse brains (U87 and GL261 glioblastoma). The 3D capillary structure in entire, undissected brains was acquired using light sheet fluorescence microscopy to produce large datasets of the highly resolved cerebrovasculature. Using this data, we trained support vector machines to classify virtual NMR voxels with different dimensions based on the simulated spin dephasing accountable to field inhomogeneities caused by the underlying vasculature. In prediction tests with previously blinded virtual voxels from healthy brain tissue and GL261 tumors, stable classification accuracies above 95% were reached. Our results indicate that high classification accuracies can be stably attained with achievable training set sizes and that larger MRI voxels facilitated increasingly successful classifications, even with small training datasets. We were able to prove that, theoretically, the transverse relaxation process can be harnessed to learn endogenous contrasts for single voxel tissue type classifications on tailored MRI acquisitions. If translatable to experimental MRI, this may augment diagnostic imaging in oncology with automated voxel-by-voxel signal interpretation to detect vascular pathologies.