Mallm, Jan-Philipp Dr.Universität HeidelbergHeidelberg
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Co-Autoren (Uni Heidelberg)
- Poos, Alexandra (4)
- Klett, Lara C. (4)
- Mechtersheimer, Gunhild (3)
- Goldschmidt, Hartmut (3)
- Erdel, Fabian (3)
- Korshunov, Andrey (3)
- Herrmann, Carl (3)
- Lichter, Peter (3)
- John, Lukas (3)
- Plass, Christoph (3)
- Anders, Simon (3)
- Bauer, Katharina (3)
- Fröhling, Stefan (3)
- Pfister, Stefan (3)
- Raab, Marc-Steffen (3)
- Hundemer, Michael (3)
- Zapatka, Marc (3)
- Schlesner, Matthias (3)
- Weinhold, Niels (3)
- Huhn, Stefanie (2)
- Müller, Ulrike C. (2)
- Goeppert, Benjamin (2)
- Herold-Mende, Christel (2)
- Jones, David T. W. (2)
- Roider, Tobias (2)
- Uvarovskii, Alexey (2)
- Teif, Vladimir (2)
- Stegle, Oliver (2)
- Frauhammer, Felix (2)
- Bruch, Peter-Martin (2)
- Seufert, Julian (2)
- Solé-Boldo, Llorenç (2)
- Bordas, Marie (2)
- (weitere Einträge vorhanden...)
Co-Autoren (extern)
- Bauer, Tobias Hartmut (1)
- Filippov, Mikhail A. (1)
- Schumacher, Hanna (1)
- Joshi, Piyush (1)
- Kostareli, Efterpi (1)
- Delacher, Michael (1)
- Stangl, Gabriele I. (1)
- Kaschutnig, Paul Emanuel (1)
- Brocks, David (1)
- Lübbert, Michael (1)
- Raddatz, Günter (1)
- Wierzbińska, Justyna Anna (1)
- Kalamakis, Georgios (1)
- Hirche, Frank (1)
- Büchler-Schäff, Marleen (1)
- Kortüm, K. Martin (1)
- Facon, Thierry (1)
- Becker, Heiko (1)
- Junge, Kristin M. (1)
- Stäble, Sina (1)
- Zirkel, Anne (1)
- Schuster, Linda (1)
- Schütz, Sabrina (1)
- Rodriguez-Paredes, Manuel (1)
- Lyko, Frank (1)
- Korte, Martin (1)
- Mattout, Anna (1)
- Sze, Siu Kwan (1)
- Supper, Emmanuelle (1)
- Singh, Prim B. (1)
- Sim, Kae Hwan (1)
- Sailaja, Badi Sri (1)
- Raghu Ram, Edupuganti V. (1)
- (weitere Einträge vorhanden...)
Publikationen in heiBIB
- Ghasemi, David R.: Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage / David R. Ghasemi, Konstantin Okonechnikov, Anne Rademacher, Stephan Tirier, Kendra K. Maass, Hanna S… , 08 January 2024. - 20 S.
In: Nature Communications, ISSN 2041-1723. 15(2024), Artikel-ID 269, Seite 1-20
DOI: 10.1038/s41467-023-44117-x
- Schuster, Linda: Progenitor-like cell type of an MLL-EDC4 fusion in acute myeloid leukemia : to the editor / Linda C. Schuster, Afzal P. Syed, Stephan M. Tirier, Simon Steiger, Isabelle Seufert, Heiko Becker, … , November 20, 2023. - 5 S. : Illustrationen
In: Blood advances, ISSN 2473-9537. 7(2023), 22, Seite 7079-7083
DOI: 10.1182/bloodadvances.2022009096
- Piroeva, Kristan V.: Nucleosome repositioning in chronic lymphocytic leukemia / Kristan V. Piroeva, Charlotte McDonald, Charalampos Xanthopoulos, Chelsea Fox, Christopher T. Clarks… , December 2023. - 13 S. : Illustrationen
In: Genome research, ISSN 1549-5469. 33(2023), 10, Seite 1649-1661
DOI: 10.1101/gr.277298.122
- John, Lukas: Resolving the spatial architecture of myeloma and its microenvironment at the single-cell level / Lukas John, Alexandra M. Poos, Alexander Brobeil, Carolina Schinke, Stefanie Huhn, Nina Prokoph, Rap… , 17 August 2023. - 17 S.
In: Nature Communications, ISSN 2041-1723. 14(2023), Artikel-ID 5011, Seite 1-17
DOI: 10.1038/s41467-023-40584-4
- Poos, Alexandra: Resolving therapy resistance mechanisms in multiple myeloma by multiomics subclone analysis / Alexandra M. Poos, Nina Prokoph, Moritz J. Przybilla, Jan-Philipp Mallm, Simon Steiger, Isabelle Seu… , 9 November 2023. - 14 S.
In: Blood, ISSN 1528-0020. 142(2023), 19, Seite 1633-1646
DOI: 10.1182/blood.2023019758
- Wong, John K. L.: scSNPdemux : a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis / John K.L. Wong, Lena Jassowicz, Christel Herold-Mende, Martina Seiffert, Jan-Philipp Mallm, Peter Li… , 31 August 2023. - 1-6$t6
In: BMC bioinformatics, ISSN 1471-2105. 24(2023), 1, Artikel-ID 326
DOI: 10.1186/s12859-023-05440-8
- Muckenhuber, Markus: Epigenetic signals that direct cell type-specific interferon beta response in mouse cells / Markus Muckenhuber, Isabelle Seufert, Katharina Müller-Ott, Jan-Philipp Mallm, Lara C. Klett, Caroli… , 2 February, 2023. - 18 S.
In: Life science alliance, ISSN 2575-1077. 6(2023), 4 vom: Apr., Artikel-ID 202201823, Seite 1-18
DOI: 10.26508/lsa.202201823
- Solé-Boldo, Llorenç: Differentiation-related epigenomic changes define clinically distinct keratinocyte cancer subclasses / Llorenç Solé-Boldo, Günter Raddatz, Julian Gutekunst, Oliver Gilliam, Felix Bormann, Michelle S Libe… , 19 September 2022. - 22 S.
In: Molecular systems biology, ISSN 1744-4292. 18(2022), 9, Artikel-ID e11073, Seite 1-18, EV1-EV4
DOI: 10.15252/msb.202211073
- Bogeska, Ruzhica: Inflammatory exposure drives long-lived impairment of hematopoietic stem cell self-renewal activity and accelerated aging / Ruzhica Bogeska, Ana-Matea Mikecin, Paul Kaschutnig, Malak Fawaz, Marleen Büchler-Schäff, Duy Le, Mi… , 4 August 2022. - 12 S.
In: Cell stem cell, ISSN 1875-9777. 29(2022), 8, Seite 1273-1284.e8
DOI: 10.1016/j.stem.2022.06.012
- Derrien, Jennifer: The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability / Jennifer Derrien, Catherine Guérin-Charbonnel, Victor Gaborit, Loïc Campion, Magali Devic, Elise Dou… , 09 August 2021. - 21 S.
In: Genome medicine, ISSN 1756-994X. 13(2021), Artikel-ID 127, Seite 1-21
DOI: 10.1186/s13073-021-00938-3
- Tirier, Stephan Marius: Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single‐cell transcriptomics / Stephan M. Tirier, Jan-Philipp Mallm, Simon Steiger, Alexandra M. Poos, Mohamed H. S. Awwad, Nicola … , 29 November 2021. - 16 S.
In: Nature Communications, ISSN 2041-1723. 12(2021), Artikel-ID 6960, Seite 1-16
DOI: 10.1038/s41467-021-26951-z
- Roider, Tobias: Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels / Tobias Roider, Julian Seufert, Alexey Uvarovskii, Felix Frauhammer, Marie Bordas, Nima Abedpour, Mar… , 15 June 2020. - 11 S.
In: Nature cell biology, ISSN 1476-4679. 22(2020), 7, Seite 896-906
DOI: 10.1038/s41556-020-0532-x
- Vu, Therese: Hematopoietic stem and progenitor cell-restricted Cdx2 expression induces transformation to myelodysplasia and acute leukemia / Therese Vu, Jasmin Straube, Amy H. Porter, Megan Bywater, Axia Song, Victoria Ling, Leanne Cooper, G… , June 15, 2020. - 15 S.
In: Nature Communications, ISSN 2041-1723. 11(2020) Artikel-Nummer 3021, 15 Seiten
DOI: 10.1038/s41467-020-16840-2
- Solé-Boldo, Llorenç: Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming / Llorenç Solé-Boldo, Günter Raddatz, Sabrina Schütz, Jan-Philipp Mallm, Karsten Rippe, Anke S. Lonsdo… , 23 April 2020. - 12 S.
In: Communications biology, ISSN 2399-3642. 3(2020) Artikel-Nummer 188, 12 Seiten
DOI: 10.1038/s42003-020-0922-4
- Wierzbińska, Justyna Anna: Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL / Justyna A. Wierzbinska, Reka Toth, Naveed Ishaque, Karsten Rippe, Jan-Philipp Mallm, Lara C. Klett, … , 18 March 2020. - 19 S.
In: Genome medicine, ISSN 1756-994X. 12(2020), Artikel-ID 29, Seite 1-19
DOI: 10.1186/s13073-020-00724-7
- Roider, Tobias: Dissecting intratumor heterogeneity of nodal B cell lymphomas at transcriptional, genetic, and drug response levels / Tobias Roider, Julian Seufert, Alexey Uvarovskii, Felix Frauhammer, Marie Bordas, Nima Abedpour, Mar… . -
Heidelberg: Universität, 2020-04-02. - 1 Online-Ressource (15 Files)
DOI: 10.11588/data/VRJUNV
- Delacher, Michael: Precursors for nonlymphoid-tissue treg cells reside in secondary lymphoid organs and are programmed by the transcription factor BATF / Michael Delacher, Charles D. Imbusch, Agnes Hotz-Wagenblatt, Jan-Philipp Mallm, Katharina Bauer, Mal… , 7 January 2020. - 30 S.
In: Immunity, ISSN 1097-4180. 52(2020), 2, Seite 295-312.e1-e11
DOI: 10.1016/j.immuni.2019.12.002
- Tirier, Stephan Marius: Pheno-seq - linking visual features and gene expression in 3D cell culture systems / Stephan M. Tirier, Jeongbin Park, Friedrich Preußer, Lisa Amrhein, Zuguang Gu, Simon Steiger, Jan-Ph… , 26 August 2019. - 15 S.
In: Scientific reports, ISSN 2045-2322. 9(2019) Artikel-Nummer 12367, 15 Seiten
DOI: 10.1038/s41598-019-48771-4
- Mallm, Jan-Philipp: Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks / Jan-Philipp Mallm, Murat Iskar, Naveed Ishaque, Lara C. Klett, Sabrina J. Kugler, Jose M. Muino, Vla… , 22 May 2019. - 20 S.
In: Molecular systems biology, ISSN 1744-4292. 15(2019,5) Artikel-Nummer e8339, 20 Seiten
DOI: 10.15252/msb.20188339
- Kalamakis, Georgios: Quiescence modulates stem cell maintenance and regenerative capacity in the aging brain / Georgios Kalamakis, Daniel Brüne, Srikanth Ravichandran, Jan Bolz, Wenqiang Fan, Frederik Ziebell, T… , March 7, 2019. - 14 S.
In: Cell, ISSN 1097-4172. 176(2019), 6, Seite 1407-1419.e14
DOI: 10.1016/j.cell.2019.01.040
- Erkek, Serap: Comprehensive analysis of chromatin states in atypical teratoid/rhabdoid tumor identifies diverging roles for SWI/SNF and polycomb in gene regulation / Serap Erkek, Pascal D. Johann, Martina A. Finetti, Yiannis Drosos, Hsien-Chao Chou, Marc Zapatka, Do… , 2019. - 25 S.
In: Cancer cell, ISSN 1878-3686. 35(2019,1) Seite 95-110.e8, 16 Seiten
DOI: 10.1016/j.ccell.2018.11.014
- Zirkel, Anne: HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types / Anne Zirkel, Milos Nikolic, Konstantinos Sofiadis, Jan-Philipp Mallm, Chris A. Brackley, Henrike Got… , April 26, 2018. - 21 S.
In: Molecular cell, ISSN 1097-4164. 70(2018), 4, Seite 730-744.e1-e6
DOI: 10.1016/j.molcel.2018.03.030
- Teif, Vladimir: Nucleosome repositioning during differentiation of a human myeloid leukemia cell line / Vladimir B. Teif, Jan-Philipp Mallm, Tanvi Sharma, David B. Mark Welch, Karsten Rippe, Roland Eils, … , 23 February 2017. - 17 S.
In: Nucleus, ISSN 1949-1042. 8(2017), 2, Seite 188-204
DOI: 10.1080/19491034.2017.1295201
- Brocks, David: DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats / David Brocks, Christopher R. Schmidt, Michael Daskalakis, Hyo Sik Jang, Nakul M. Shah, Daofeng Li, J… , 12 June 2017. - 9 S.
In: Nature genetics, ISSN 1546-1718. 49(2017), 7, Seite 1052-1060
DOI: 10.1038/ng.3889
- Molitor, Jana: Retrieving chromatin patterns from deep sequencing data using correlation functions / Jana Molitor, Jan-Philipp Mallm, Karsten Rippe, Fabian Erdel. - 18 S.
In: Biophysical journal, ISSN 1542-0086. 112(2017), 3, S. 473-490
DOI: 10.1016/j.bpj.2017.01.001
- Bauer, Tobias Hartmut: Environment-induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children / Tobias Bauer, Saskia Trump, Naveed Ishaque, Loreen Thürmann, Lei Gu, Mario Bauer, Matthias Bieg, Zug… , 24 March 2016
In: Molecular systems biology, ISSN 1744-4292. 12(2016,3) Artikel-Nummer 861, 18 Seiten
DOI: 10.15252/msb.20156520
- Campos, Benito: Retinoid resistance and multifaceted impairment of retinoic acid synthesis in glioblastoma / Benito Campos, Sarah Weisang, Florian Osswald, Ramadan Ali, Georg Sedlmeier, Josephine Bageritz, Jan… , May 6, 2015. - 10 S.
In: Glia, ISSN 1098-1136. 63(2015), 10, Seite 1850-1859
DOI: 10.1002/glia.22849
- Mattout, Anna: Heterochromatin protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells / Anna Mattout, Yair Aaronson, Badi Sri Sailaja, Edupuganti V. Raghu Ram, Arigela Harikumar, Jan-Phili… , 28 September 2015. - 21 S.
In: Genome biology, ISSN 1474-760X. 16(2015) Artikel-Nummer 213, 21 Seiten
DOI: 10.1186/s13059-015-0760-8
- Mallm, Jan-Philipp: Aurora kinase B regulates telomerase activity via a centromeric RNA in stem cells / Jan-Philipp Mallm and Karsten Rippe, June 4, 2015. - 12 S.
In: Cell reports, ISSN 2211-1247. 11(2015), 10, Seite 1667-1678
DOI: 10.1016/j.celrep.2015.05.015
- Junge, Kristin M.: Increased vitamin D levels at birth and in early infancy increase offspring allergy risk : evidence for involvement of epigenetic mechanisms / Kristin M. Junge, Tobias Bauer, Stefanie Geissler, Frank Hirche, Loreen Thürmann, Mario Bauer, Saski… , 2016. - 4 S.
In: The journal of allergy and clinical immunology, ISSN 1097-6825. 137(2016), 2, Seite 610-613
DOI: 10.1016/j.jaci.2015.06.040
- Hick, Meike: Acute function of secreted amyloid precursor protein fragment APPsα in synaptic plasticity / Meike Hick, Ulrike Herrmann, Sascha W. Weyer, Jan-Philipp Mallm, Jakob-Andreas Tschäpe, Marianne Bor… , 2015. - 17 S.
In: Acta neuropathologica, ISSN 1432-0533. 129(2015), 1, Seite 21-37
DOI: 10.1007/s00401-014-1368-x
- Teif, Vladimir: Taking into account nucleosomes for predicting gene expression / Vladimir B. Teif, Fabian Erdel, Daria A. Beshnova, Yevhen Vainshtein, Jan-Philipp Mallm, Karsten Rip… , 21 March 2013. - 13 S.
In: Methods, ISSN 1095-9130. 62(2013), 1, Seite 26-38
DOI: 10.1016/j.ymeth.2013.03.011
- Hahn, Matthias: Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin / Matthias Hahn, Silvia Dambacher, Stanimir Dulev, Anastasia Yurievna Kuznetsova, Simon Eck, Stefan Wö… , April 18, 2013. - 14 S.
In: Genes & development, ISSN 1549-5477. 27(2013), 8, Seite 859-872
DOI: 10.1101/gad.210377.112
- Jäger, Natalie: Hypermutation of the inactive X chromosome is a frequent event in cancer / Natalie Jäger ... Jan-Philipp Mallm ... Andrey Korshunov... Hendrik Witt ... Karsten Rippe ... Stefa… , 2013. - 15 S.
In: Cell, ISSN 1097-4172. 155(2013), Seite 1-15
DOI: 10.1016/j.cell.2013.09.042
- Teif, Vladimir: Genome-wide nucleosome positioning during embryonic stem cell development / Vladimir B. Teif, Yevhen Vainshtein, Maïwen Caudron-Herger, Jan-Philipp Mallm, Caroline Marth, Thoma… , 21 October 2012. - 8 S.
In: Nature structural & molecular biology, ISSN 1545-9985. 19(2012), 11, Seite 1185-1192
DOI: 10.1038/nsmb.2419
- Mallm, Jan-Philipp: Identifying epigenetic signaling pathways in embryonic stem cells that are involved in the proliferation of cancer cells / presented by Jan-Philipp Mallm, 2012. - X, 135 S. : Ill., graph. Darst.
- Caudron-Herger, Maïwen: Coding RNAs with a non-coding function : Maintenance of open chromatin structure / Maïwen Caudron-Herger, Katharina Müller-Ott, Jan-Philipp Mallm, Caroline Marth, Ute Schmidt, Katalin… , 25 Oct 2011. - 15 S.
In: Nucleus, ISSN 1949-1042. 2(2011), 5, Seite 410-424
DOI: 10.4161/nucl.2.5.17736
- Mallm, Jan-Philipp: Generation of conditional null alleles for APP and APLP2 / Jan-Philipp Mallm, Jakob-Andreas Tschäpe, Meike Hick, Mikhail A. Filippov, and Ulrike C. Müller, 5 February 2010. - 7 S.
In: Genesis, ISSN 1526-968X. 48(2010), 3 vom: März, Seite 200-206
DOI: 10.1002/dvg.20601
- Kitiporn Plaimas: Machine learning based analyses on metabolic networks supports high-throughput knockout screens / Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils and Ra…
In: BMC systems biology, ISSN 1752-0509. 2(2008) Artikel-Nr. 67, 11 Seiten
DOI: 10.1186/1752-0509-2-67
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