Thumberger, Thomas Dr. rer. nat.Universität HeidelbergHeidelberg
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- Cornean, Alex (5)
- Kellner, Tanja (4)
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- Tisler, Matthias Konrad (3)
- Bajoghli, Baubak (3)
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Publications in heiBIB 
- Pakari, Kaisa: Establishing an auxin-inducible GFP nanobody-based acute protein knockdown system to mimic hypomorphic mutations during early medaka embryogenesis / Kaisa Pakari, Sevinç Jakab, Encarnación Sánchez Salvador, Christian Thiel, Joachim Wittbrodt, Thomas… , May 23, 2025. - 22 S.
In: bioRxiv beta. (2025) vom: Mai, Artikel-ID 2025.05.23.655727, Seite 1-22
DOI: 10.1101/2025.05.23.655727
- Gierten, Jakob: Natural genetic variation quantitatively regulates heart rate and dimension / Jakob Gierten, Bettina Welz, Tomas Fitzgerald, Thomas Thumberger, Rashi Agarwal, Oliver Hummel, Adri… , 30 April 2025. - 12 S. : Illustrationen
In: Nature Communications, ISSN 2041-1723. 16(2025), Artikel-ID 4062, Seite 1-12
DOI: 10.1038/s41467-025-59425-7
- Welz, Bettina: Discovery and characterisation of gene by environment and epistatic genetic effects in a vertebrate model / Bettina Welz, Saul Pierotti, Tomas Fitzgerald, Thomas Thumberger, Risa Suzuki, Philip Watson, Jana F… , April 26, 2025. - 43 S.
In: bioRxiv beta. (2025) vom: Apr., Artikel-ID 2025.04.24.650462, Seite 1-43
DOI: 10.1101/2025.04.24.650462
- Suzuki, Risa: Characterizing medaka visual features using a high-throughput optomotor response assay / Risa Suzuki, Jia Zheng Woo, Thomas Thumberger, Gero Hofmann, Joachim Wittbrodt, Tinatini Tavhelidse-… , June 28, 2024. - 14 S. : Illustrationen
In: PLOS ONE, ISSN 1932-6203. 19(2024), 6, Artikel-ID e0302092, Seite 1-14
DOI: 10.1371/journal.pone.0302092
- Suzuki, Risa: Characterizing medaka visual features using a high-throughput optomotor response assay / Risa Suzuki, Jia Zheng Woo, Thomas Thumberger, Gero Hofmann, Joachim Wittbrodt and Tinatini Tavhelid… , March 31, 2024. - 26 S. : Illustrationen
In: bioRxiv beta. (2024) vom: März, Artikel-ID 2024.03.28.587314, Seite 1-26
DOI: 10.1101/2024.03.28.587314
- Medert, Rebekka: Efficient single copy integration via homology-directed repair (scHDR) by 5′modification of large DNA donor fragments in mice / Rebekka Medert, Thomas Thumberger, Tinatini Tavhelidse-Suck, Tobias Hub, Tanja Kellner, Yoko Oguchi,… , 22 February 2023. - 14 S. : Illustrationen
In: Nucleic acids research, ISSN 1362-4962. 51(2023), 3, Artikel-ID e14, Seite 1-14
DOI: 10.1093/nar/gkac1150
- Pakari, Kaisa: CRISPR-Fortschritte : Schnitt für Schnitt zu neuen Möglichkeiten / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, 21 February 2023. - 4 S.
In: Biospektrum, ISSN 1868-6249. 29(2023), 1, Seite 25-28
DOI: 10.1007/s12268-023-1893-z
- Gierten, Jakob: Natural genetic variation quantitatively regulates heart rate and dimension / Jakob Gierten, Bettina Welz, Tomas Fitzgerald, Thomas Thumberger, Oliver Hummel, Adrien Leger, Phili… , November 02, 2023. - 21 S.
In: bioRxiv beta. (2023), Artikel-ID 2023.09.01.555906, Seite 1-21
DOI: 10.1101/2023.09.01.555906
- Doering, Lino: CRISPR-based knockout and base editing confirm the role of MYRF in heart development and congenital heart disease / Lino Doering, Alex Cornean, Thomas Thumberger, Joergen Benjaminsen, Beate Wittbrodt, Tanja Kellner, … , August 2023. - 14 S. : Illustrationen
In: Disease models & mechanisms, ISSN 1754-8411. 16(2023), 8 vom: Aug., Artikel-ID dmm049811, Seite 1-14
DOI: 10.1242/dmm.049811
- Pakari, Kaisa: De novo PAM generation to reach initially inaccessible target sites for base editing / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, 2023. - 7 S.
In: Development, ISSN 1477-9129. 150(2023), 2, Artikel-ID dev201115, Seite 1-7
DOI: 10.1242/dev.201115
- Pakari, Kaisa: The inceptionist’s guide to base editing : de novo PAM generation to reach initially inaccessible target-sites / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, July 07, 2022. - 18 S.
In: bioRxiv beta. (2022) vom: Juli, Artikel-ID 2022.07.07.499158, Seite 1-18
DOI: 10.1101/2022.07.07.499158
- Thumberger, Thomas: Boosting targeted genome editing using the hei-tag / Thomas Thumberger, Tinatini Tavhelidse-Suck, Jose Arturo Gutierrez-Triana, Alex Cornean, Rebekka Med… , Mar 25, 2022. - 16 S. : Illustrationen
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e70558, Seite 1-16
DOI: 10.7554/eLife.70558
- Beedgen, Lars: A rapid and simple procedure for the isolation and cultivation of fibroblast-like cells from medaka and zebrafish embryos and fin clip biopsies / Lars Beedgen, Andreas Hüllen, Sevinç Gücüm, Thomas Thumberger, Jochen Wittbrodt, Christian Thiel. -
London: Sage Publications, 21 Jun. 2022. - 1 Online-Ressource (9 Seiten)
DOI: 10.11588/heidok.00031793
- Cornean, Alex: Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction / Alex Cornean, Jakob Gierten, Bettina Welz, Juan Luis Mateo, Thomas Thumberger, Joachim Wittbrodt, 04 April 2022. - 34 S.
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e72124, Seite 1-34
DOI: 10.7554/eLife.72124
- Leger, Adrien: Genomic variations and epigenomic landscape of the medaka inbred Kiyosu-Karlsruhe (MIKK) panel / Adrien Leger, Ian Brettell, Jack Monahan, Carl Barton, Nadeshda Wolf, Natalja Kusminski, Cathrin Her… , 21 February 2022. - 24 S.
In: Genome biology, ISSN 1474-760X. 23(2022), Artikel-ID 58, Seite 1-24
DOI: 10.1186/s13059-022-02602-4
- Fitzgerald, Tomas: The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel / Tomas Fitzgerald, Ian Brettell, Adrien Leger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl B… , 21 February 2022. - 32 S.
In: Genome biology, ISSN 1474-760X. 23(2022), Artikel-ID 59, Seite 1-32
DOI: 10.1186/s13059-022-02623-z
- Cornean, Alex: Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction / authors: Alex Cornean, Jakob Gierten, Bettina Welz, Juan L. Mateo, Thomas Thumberger, Joachim Wittbr… , July 26, 2021. - 63 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Juli, Artikel-ID 2021.07.26.453883, Seite 1-63
DOI: 10.1101/2021.07.26.453883
- Hammouda, Omar: In vivo identification and validation of novel potential predictors for human cardiovascular diseases / Omar T. Hammouda, Meng Yue Wu, Verena Kaul, Jakob Gierten, Thomas Thumberger and Joachim Wittbrodt, June 21, 2021. - 42 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Juni, Artikel-ID 2021.02.03.429563, Seite 1-42
DOI: 10.1101/2021.02.03.429563
- Thumberger, Thomas: Hei-tag: a highly efficient tag to boost targeted genome editing / Thomas Thumberger, Tinatini Tavhelidse, Jose Arturo Gutierrez-Triana, Rebekka Medert, Alex Cornean, … , June 10, 2021. - 19 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Juni, Artikel-ID 2021.05.27.445956, Seite 1-19
DOI: 10.1101/2021.05.27.445956
- Fitzgerald, Tomas: The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel / Tomas Fitzgerald, Ian Brettell, Adrien Leger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl B… , May 21, 2021. - 34 S.
In: bioRxiv beta. (2021) vom: Mai, Artikel-ID 2021.05.17.444412, Seite 1-34
DOI: 10.1101/2021.05.17.444412
- Medert, Rebekka: Efficient single copy integration via homology-directed repair (scHDR) by 5’modification of large DNA donor fragments in mice / Rebekka Medert, Thomas Thumberger, Tinatini Tavhelidse, Tobias Hub, Tanja Kellner, Yoko Oguchi, Sasc… , September 30, 2021. - 37 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Sept., Artikel-ID 2021.09.30.462539, Seite 1-37
DOI: 10.1101/2021.09.30.462539
- Hammouda, Omar: In vivo identification and validation of novel potential predictors for human cardiovascular diseases / Omar T. Hammouda, Meng Yue Wu, Verena Kaul, Jakob Gierten, Thomas Thumberger, Joachim Wittbrodt, December 17, 2021. - 20 S.
In: PLOS ONE, ISSN 1932-6203. 16(2021), 12, Artikel-ID e0261572, Seite 1-20
DOI: 10.1371/journal.pone.0261572
- Zilova, Lucie: Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development - in vivo imaging of OV formation / Lucie Zilova, Venera Weinhardt, Tinatini Tavhelidse, Christina Schlagheck, Thomas Thumberger, Joachi… . -
Heidelberg: Universität, 2021-07-06. - 1 Online-Ressource (12 Files)
DOI: 10.11588/data/AOSUS8
- Cirksena, Karsten: The C-mannosylome of human induced pluripotent stem cells implies a role for ADAMTS16 C-pannosylation in eye development / Karsten Cirksena, Hermann J. Hutte, Aleksandra Shcherbakova, Thomas Thumberger, Roman Sakson, Stefan… , May 8, 2021. - 14 S.
In: Molecular & cellular proteomics, ISSN 1535-9484. 20(2021), Artikel-ID 100092, Seite 1-14
DOI: 10.1016/j.mcpro.2021.100092
- Zilova, Lucie: Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development / Lucie Zilova, Venera Weinhardt, Tinatini Tavhelidse, Christina Schlagheck, Thomas Thumberger, Joachi… , 12 July 2021. - 26 S.
In: eLife, ISSN 2050-084X. 10(2021), Artikel-ID e66998, Seite 1-26
DOI: 10.7554/eLife.66998
- Aghaallaei, Nargessadat: αβ/γδ T cell lineage outcome is regulated by intrathymic cell localization and environmental signals / Narges Aghaallaei, Advaita M. Dick, Erika Tsingos, Daigo Inoue, Eva Hasel, Thomas Thumberger, Atsush… , 14 July 2021. - 13 S.
In: Science advances, ISSN 2375-2548. 7(2021), 29, Artikel-ID eabg3613, Seite 1-13
DOI: 10.1126/sciadv.abg3613
- Jakab, Sevinç: A patient-based medaka alg2 mutant as a model for hypo-N-glycosylation / Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedge… , 09 June 2021. - 16 S.
In: Development, ISSN 1477-9129. 148(2021), 11, Artikel-ID dev.199385, Seite 1-16
DOI: 10.1242/dev.199385
- Bosze, Bernadett: Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish / Bernadett Bosze, Yosuke Ono, Benjamin Mattes, Claude Sinner, Victor Gourain, Thomas Thumberger, Sham… , 01 June 2020. - 18 S.
In: Histochemistry and cell biology, ISSN 1432-119X. 154(2020), 5, Seite 463-480
DOI: 10.1007/s00418-020-01887-5
- Meyer, Hannah V.: Genetic and functional insights into the fractal structure of the heart / Hannah V. Meyer, Timothy J.W. Dawes, Marta Serrani, Wenjia Bai, Paweł Tokarczuk, Jiashen Cai, Antoni… , 19 August 2020. - 6 S.
In: Nature, ISSN 1476-4687. 584(2020), 7822, Seite 589-594
DOI: 10.1038/s41586-020-2635-8
- Jakab, Sevinç: The medaka alg2 mutant is a model for hypo-N-glycosylation-associated retinitis pigmentosa / Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Lars Beedgen, Christian Thiel, Erdmann … , August 24, 2020. - 40 S.
In: bioRxiv beta. (2020) vom: Aug., Artikel-ID 2020.08.20.260430, Seite 1-40
DOI: 10.1101/2020.08.20.260430
- Mederer, Tanja: A complementary study approach unravels novel players in the pathoetiology of Hirschsprung disease / Tanja Mederer, Stefanie Schmitteckert, Julia Volz, Cristina Martínez, Ralph Röth, Thomas Thumberger,… , November 5, 2020
In: PLoS Genetics, ISSN 1553-7404. 16(2020), 11, Seite e1009106
DOI: 10.1371/journal.pgen.1009106
- Mir, Perihan: Active DNA demethylation mediated By GADD45β is essential during G-CSF triggered granulocytic differentiation / Perihan Mir, Maksim Klimiankou, Narges Aghaallaei, Betuel Findik, Frederic Thalheimer, Susanne Winge… , November 13, 2019. - 3 S.
In: Blood, ISSN 1528-0020. 134(2019), Supplement_1, Artikel-ID 211, Seite 1-3
DOI: 10.1182/blood-2019-128508
- Hammouda, Omar: Swift large-scale examination of directed genome editing / Omar T. Hammouda, Frank Böttger, Joachim Wittbrodt, Thomas Thumberger, March 5, 2019. - 11 S.
In: PLOS ONE, ISSN 1932-6203. 14(2019), 3, Artikel-ID e0213317, Seite 1-11
DOI: 10.1371/journal.pone.0213317
- Bosze, Bernadett: Pcdh18a-positive tip cells instruct notochord formation in zebrafish / Bernadett Bosze, Benjamin Mattes, Claude Sinner, Kathrin Stricker, Victor Gourain, Thomas Thumberger… , January 31, 2018. - 47 S. : Illustrationen
In: bioRxiv beta. (2018) vom: Jan., Artikel-ID 257717, Seite 1-47
DOI: 10.1101/257717
- Vick, Philipp: An early function of Polycystin-2 for left-right organizer induction in Xenopus / Philipp Vick, Jennifer Kreis, Isabelle Schneider, Melanie Tingler, Maike Getwan, Thomas Thumberger, … , 27 April 2018. - 10 S. : Illustrationen, Diagramme
In: Food science and human wellness, ISSN 2213-4530. 2(2018), Seite 76-85
DOI: 10.1016/j.isci.2018.03.011
- Vick, Philipp: An early function of polycystin-2 for left-right organizer induction in xenopus / Philipp Vick, Jennifer Kreis, Isabelle Schneider, Melanie Tingler, Maike Getwan, Thomas Thumberger, … , 2018. - 10 S. : Illustrationen, Diagramme
In: iScience, ISSN 2589-0042. 2(2018), Seite 76-85
DOI: 10.1016/j.isci.2018.03.011
- Gutiérrez Triana, José Arturo: Efficient single-copy HDR by 5' modified long dsDNA donors / Jose Arturo Gutierrez-Triana, Tinatini Tavhelidse, Thomas Thumberger, Isabelle Thomas, Beate Wittbro… , Aug 29, 2018
In: eLife, ISSN 2050-084X. 7(2018) Artikel-Nummer e39468, 41 Seiten
DOI: 10.7554/eLife.39468
- Inoue, Daigo: Expression of the novel maternal centrosome assembly factor Wdr8 is required for vertebrate embryonic mitoses / Daigo Inoue, Manuel Stemmer, Thomas Thumberger, Thomas Ruppert, Felix Bärenz, Joachim Wittbrodt, and… , 18 Jan 2017. - 12 S.
In: Nature Communications, ISSN 2041-1723. 8(2017), Artikel-ID 14090
DOI: 10.1038/ncomms14090
- Ulmer, Bärbel: A novel role of the organizer gene Goosecoid as an inhibitor of Wnt/PCP-mediated convergent extension in Xenopus and mouse / Bärbel Ulmer, Melanie Tingler, Sabrina Kurz, Markus Maerker, Philipp Andre, Dina Mönch, Marina Campi… , 21 February 2017. - 17 S.
In: Scientific reports, ISSN 2045-2322. 7(2017), Artikel-ID 43010, Seite 1-17
DOI: 10.1038/srep43010
- Kuri Rodríguez, Paola Sofía: Dynamics of in vivo ASC speck formation / Paola Kuri, Nicole L. Schieber, Thomas Thumberger, Joachim Wittbrodt, Yannick Schwab, and Maria Lept… , 12 July 2017. - 19 S.
In: The journal of cell biology, ISSN 1540-8140. 216(2017), 9, Seite 2891-2909
DOI: 10.1083/jcb.201703103
- Shi, Dongbo: Bifacial stem cell niches in fish and plants / Dongbo Shi, Tinatini Tavhelidse, Thomas Thumberger, Joachim Wittbrodt and Thomas Greb, 24 February 2017. - 6 S.
In: Current opinion in genetics & development, ISSN 1879-0380. 45(2017), Seite 28-33
DOI: 10.1016/j.gde.2017.02.002
- Tisler, Matthias Konrad: Leftward flow determines laterality in conjoined twins / Matthias Tisler, Thomas Thumberger, Isabelle Schneider, Axel Schweickert, and Martin Blum, 2017. - 6 S.
In: Current biology, ISSN 1879-0445. 27(2017), 4, Seite 543-548
DOI: 10.1016/j.cub.2016.12.049
- Kromm, Dimitri: An eye on light-sheet microscopy / D. Kromm, T. Thumberger, J. Wittbrodt, 27 February 2016. - 19 S.
In: Cellular biology. (2016), Seite 105-123
DOI: 10.1016/bs.mcb.2016.01.001
- Tisler, Matthias Konrad: Cilia are required for asymmetric nodal induction in the sea urchin embryo / Matthias Tisler, Franziska Wetzel, Sabrina Mantino, Stanislav Kremnyov, Thomas Thumberger, Axel Schw… , 23 August 2016. - 12 S. : Illustrationen
In: BMC developmental biology, ISSN 1471-213X. 16(2016,1), Artikel-Nummer 28, 12 Seiten
DOI: 10.1186/s12861-016-0128-7
- Bert, Bettina: Considerations for a European animal welfare standard to evaluate adverse phenotypes in teleost fish / Bettina Bert, Justyna Chmielewska, Sven Bergmann, Maximilian Busch, Wolfgang Driever, Karin Finger-B… , 22 April 2016. - 4 S.
In: The EMBO journal, ISSN 1460-2075. 35(2016), 11, Seite 1151-1154
DOI: 10.15252/embj.201694448
- Bajoghli, Baubak: Noninvasive in toto imaging of the thymus reveals heterogeneous migratory behavior of developing T cells / Baubak Bajoghli, Paola Kuri, Daigo Inoue, Narges Aghaallaei, Marleen Hanelt, Thomas Thumberger, Matt… . - 10 S.
In: The journal of immunology, ISSN 1550-6606. 195(2015), 5, S. 2177-2186
DOI: 10.4049/jimmunol.1500361
- Stemmer, Manuel: CCTop : an intuitive, flexible and reliable CRISPR/Cas9 target prediction tool / Manuel Stemmer ; Thomas Thumberger ; Maria del Sol Keyer ; Joachim Wittbrodt ; Juan L. Mateo
In: PLOS ONE, ISSN 1932-6203. 10(2015,4) Artikel-Nr. e0124633, 11 S.
DOI: 10.1371/journal.pone.0124633
- Walentek, Peter: A novel serotonin-secreting cell type regulates ciliary motility in the mucociliary epidermis of Xenopus tadpoles / Peter Walentek, Susanne Bogusch, Thomas Thumberger, Philipp Vick, Eamon Dubaissi, Tina Beyer, Martin… . - 8 S.
In: Development, ISSN 1477-9129. 141(2014), 7, S. 1526-1533
DOI: 10.1242/dev.102343
- Thumberger, Thomas: Acquisition of leftward flow in Xenopus laevis / Thomas Thumberger, Martin Blum, Dec 05, 2013. - 4 S.
In: Bio-protocol, ISSN 2331-8325. 3(2013), 23, Artikel-ID e996, Seite 1-4
DOI: 10.21769/BioProtoc.996
- Hagenlocher, Cathrin: Ciliogenesis and cerebrospinal fluid flow in the developing Xenopus brain are regulated by foxj1 / Cathrin Hagenlocher; Peter Walentek; Christina Müller; Thomas Thumberger; Kerstin Feistel. -
London: BioMed Central, 2016. - 1 Online-Ressource
- Beyer, Tina: Connexin26-mediated transfer of laterality cues in Xenopus / Tina Beyer, Thomas Thumberger, Axel Schweickert and Martin Blum, 2012. - 9 S. : Illustrationen, Diagramme
In: Biology open, ISSN 2046-6390. 1(2012), 5, Seite 473-481
DOI: 10.1242/bio.2012760
- Schweickert, Axel: Linking early determinants and cilia-driven leftward flow in left-right axis specification of Xenopus laevis : a theoretical approach / Axel Schweickert; Peter Walentek; Thomas Thumberger; Mike Danilchik, February 2012. - 2 S. : Ill., graph. Darst.
In: Differentiation, ISSN 1432-0436. 83(2012), 2, Seite S67-S77
DOI: 10.1016/j.diff.2011.11.005
- Höckendorf, Burkhard: Quantitative analysis of embryogenesis : a perspective for light sheet microscopy / Burkhard Höckendorf, Thomas Thumberger, and Joachim Wittbrodt. - 10 S.
In: Developmental cell, ISSN 1878-1551. 23(2012), 6, S. 1111-1120
DOI: 10.1016/j.devcel.2012.10.008
- Thumberger, Thomas: Ciliary and non-ciliary expression and function of PACRG during vertebrate development / Thomas Thumberger, Cathrin Hagenlocher, Matthias Tisler, Tina Beyer, Nina Tietze, Axel Schweickert, …
In: Cilia, ISSN 2046-2530. 1(2012) Artikel-Nr. 13, 11 S.
DOI: 10.1186/2046-2530-1-13
- Walentek, Peter: ATP4a is required for Wnt-dependent Foxj1 expression and leftward flow in Xenopus left-right development / Peter Walentek,Tina Beyer, Thomas Thumberger, Axel Schweickert and Martin Blum
In: Cell reports, ISSN 2211-1247. 1(2012), 5, S. 516-527
DOI: 10.1016/j.celrep.2012.03.005
- Thumberger, Thomas: Towards a unifying model of symmetry breakage in Xenopus laevis : serotonin signaling and the cilia-driven leftward flow / von Thomas Thumberger, 2011. - VIII, 131 S. : Ill., graph. Darst.
- Thumberger, Thomas: Towards a unifying model of symmetry breakage in Xenopus laevis : serotonin signaling and the cilia-driven leftward flow / von Thomas Thumberger, 2011. - Online-Ressource
