Zapatka, Marc Dr.Universität HeidelbergHeidelberg
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Publications in heiBIB 
- Würth, Roberto: Circulating tumor cell plasticity determines breast cancer therapy resistance via neuregulin 1-HER3 signaling / Roberto Würth, Elisa Donato, Laura L. Michel, Massimo Saini, Lisa Becker, Tasneem Cheytan, Daria Don… , 03 January 2025. - 37 S.
In: Nature cancer, ISSN 2662-1347. 6(2025), 1, Seite 67-85, [1-18]
DOI: 10.1038/s43018-024-00882-2
- Daenekas, Bjarne: Conumee 2.0 : enhanced copy-number variation analysis from DNA methylation arrays for humans and mice / Bjarne Daenekas, Eilís Pérez, Fabio Boniolo, Sabina Stefan, Salvatore Benfatto, Martin Sill, Dominik… , February 2024. - 11 S. : Illustrationen
In: Bioinformatics, ISSN 1367-4811. 40(2024), 2 vom: Feb., Artikel-ID btae029, Seite 1-11
DOI: 10.1093/bioinformatics/btae029
- Zapatka, Marc: Author correction : The landscape of viral associations in human cancers / Marc Zapatka, Ivan Borozan, Daniel S. Brewer, Murat Iskar, Adam Grundhoff, Malik Alawi, Nikita Desai… , 21 March 2023. - 1 S.
In: Nature genetics, ISSN 1546-1718. 55(2023), 6, Seite 1077-1077
DOI: 10.1038/s41588-023-01316-y
- Wong, John K. L.: scSNPdemux : a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis / John K.L. Wong, Lena Jassowicz, Christel Herold-Mende, Martina Seiffert, Jan-Philipp Mallm, Peter Li… , 31 August 2023. - 1-6$t6
In: BMC bioinformatics, ISSN 1471-2105. 24(2023), 1, Artikel-ID 326
DOI: 10.1186/s12859-023-05440-8
- Herbst, Sophie: Proteogenomics refines the molecular classification of chronic lymphocytic leukemia / Sophie A. Herbst, Mattias Vesterlund, Alexander J. Helmboldt, Rozbeh Jafari, Ioannis Siavelis, Matth… , 20 October 2022. - 18 S.
In: Nature Communications, ISSN 2041-1723. 13(2022) vom: Okt., Artikel-ID 6226, Seite 1-18
DOI: 10.1038/s41467-022-33385-8
- Pixberg, Constantin Frederic: Cognition : a prospective precision oncology trial for patients with early breast cancer at high risk following neoadjuvant chemotherapy / C. Pixberg, M. Zapatka, M. Hlevnjak, S. Benedetto, J.P. Suppelna, J. Heil, K. Smetanay, L. Michel, C… , 21 November 2022. - 12 S.
In: ESMO open, ISSN 2059-7029. 7(2022), 6, Artikel-ID 100637, Seite 1-12
DOI: 10.1016/j.esmoop.2022.100637
- Möhrmann, Lino: Comprehensive genomic and epigenomic analysis in cancer of unknown primary guides molecularly-informed therapies despite heterogeneity / Lino Möhrmann, Maximilian Werner, Małgorzata Oleś, Andreas Mock, Sebastian Uhrig, Arne Jahn, Simon K… , 02 August 2022. - 15 S.
In: Nature Communications, ISSN 2041-1723. 13(2022), Artikel-ID 4485, Seite 1-15
DOI: 10.1038/s41467-022-31866-4
- Simovic, Milena: Carbon ion radiotherapy eradicates medulloblastomas with chromothripsis in an orthotopic Li-Fraumeni patient-derived mouse model / Milena Simovic, Michiel Bolkestein, Mahmoud Moustafa, John K L Wong, Verena Körber, Sarah Benedetto,… , 28 May 2021. - 14 S.
In: Neuro-Oncology, ISSN 1523-5866. 23(2021), 12, Seite 2028-2041
DOI: 10.1093/neuonc/noab127
- Hanna, Bola: Interleukin-10 receptor signaling promotes the maintenance of a PD-1int TCF-1+ CD8+ T cell population that sustains anti-tumor immunity / Bola S. Hanna, Laura Llaó-Cid, Murat Iskar, Philipp M. Roessner, Lara C. Klett, John K. L. Wong, Yas… , December 14, 2021. - 28 S.
In: Immunity, ISSN 1097-4180. 54(2021), 12, Seite 2825-2841
DOI: 10.1016/j.immuni.2021.11.004
- Hübschmann, Daniel: Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas / Daniel Hübschmann et al., 5 May 2021. - 15 S.
In: Leukemia, ISSN 1476-5551. 35(2021), 7, Seite 2002-2016
DOI: 10.1038/s41375-021-01251-z
- Plath, Michaela: Unraveling most abundant mutational signatures in head and neck cancer / Michaela Plath, Johanna Gass, Mario Hlevnjak, Qiaoli Li, Bohai Feng, Xavier Pastor Hostench, Matthia… , 2021. - 13 S.
In: International journal of cancer, ISSN 1097-0215. 148(2021), 1, Seite 115-127
DOI: 10.1002/ijc.33297
- Hlevnjak, Mario: CATCH : a prospective precision oncology trial in metastatic breast cancer / Mario Hlevnjak, Markus Schulze, Shaymaa Elgaafary, Carlo Fremd, Laura Michel, Katja Beck, Katrin Pfü… , April 22, 2021. - 11 S.
In: JCO precision oncology, ISSN 2473-4284. 5(2021), Seite 676-686
DOI: 10.1200/PO.20.00248
- Zapatka, Marc: The landscape of viral associations in human cancers / Marc Zapatka, Ivan Borozan, Daniel S. Brewer, Murat Iskar, Adam Grundhoff, Malik Alawi, Nikita Desai… , 05 February 2020. - 11 S. : Illustrationen, Diagramme
In: Nature genetics, ISSN 1546-1718. 52(2020), 3, Seite 320-330
DOI: 10.1038/s41588-019-0558-9
- Aichmüller, Christian Felix: Pilocytic astrocytoma demethylation and transcriptional landscapes link bZIP transcription factors to immune response / Christian F Aichmüller, Murat Iskar, David TW Jones, Andrey Korshunov, Bernhard Radlwimmer, Marcel K… , 13 February 2020. - 12 S.
In: Neuro-Oncology, ISSN 1523-5866. 22(2020), 9, Seite 1327-1338
DOI: 10.1093/neuonc/noaa035
- Bolkestein, Michiel: Chromothripsis in human breast cancer / Michiel Bolkestein, John K.L. Wong, Verena Thewes, Verena Körber, Mario Hlevnjak, Shaymaa Elgaafary,… , September 24, 2020. - 14 S.
In: Cancer research, ISSN 1538-7445. 80(2020), 22, Seite 4918-4931
DOI: 10.1158/0008-5472.CAN-20-1920
- Voronina, Natalia: The landscape of chromothripsis across adult cancer types / Natalia Voronina, John K.L. Wong, Daniel Hübschmann, Mario Hlevnjak, Sebastian Uhrig, Christoph E. H… , 08 May 2020. - 13 S.
In: Nature Communications, ISSN 2041-1723. 11(2020) Artikel-Nummer 2320, 13 Seiten
DOI: 10.1038/s41467-020-16134-7
- Sadik, Ahmed: IL4I1 is a metabolic immune checkpoint that activates the AHR and promotes tumor progression / Ahmed Sadik, Luis F. Somarribas Patterson, Selcen Öztürk, Soumya R. Mohapatra, Verena Panitz, Philip… , August 19, 2020. - 54 S.
In: Cell, ISSN 1097-4172. 182(2020), 5, Seite 1252-1270.e34
DOI: 10.1016/j.cell.2020.07.038
- Pfaff, Elke: Molecular subgrouping of primary pineal parenchymal tumors reveals distinct subtypes correlated with clinical parameters and genetic alterations / Elke Pfaff, Christian Aichmüller, Martin Sill, Damian Stichel, Matija Snuderl, Matthias A. Karajanni… , [2020]. - 15 S. : Illustrationen
In: Acta neuropathologica, ISSN 1432-0533. 139(2020), 2, Seite 243-257
DOI: 10.1007/s00401-019-02101-0
- Chun, Hye-Jung E.: Identification and analyses of extra-cranial and cranial rhabdoid tumor molecular subgroups reveal tumors with cytotoxic T cell infiltration / Hye-Jung E. Chun, Pascal D. Johann, Katy Milne, Marc Zapatka, Annette Buellesbach, Naveed Ishaque, M… , 7 November, 2019. - 24 S.
In: Cell reports, ISSN 2211-1247. 29(2019), 8, Seite 2338-2354.e1-e7
DOI: 10.1016/j.celrep.2019.10.013
- Mallm, Jan-Philipp: Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks / Jan-Philipp Mallm, Murat Iskar, Naveed Ishaque, Lara C. Klett, Sabrina J. Kugler, Jose M. Muino, Vla… , 22 May 2019. - 20 S.
In: Molecular systems biology, ISSN 1744-4292. 15(2019,5) Artikel-Nummer e8339, 20 Seiten
DOI: 10.15252/msb.20188339
- Fremd, Carlo: Mismatch repair deficiency drives durable complete remission by targeting programmed death receptor 1 in a metastatic luminal breast cancer patient / Carlo Fremd, Mario Hlevnjak, Marc Zapatka, Inka Zoernig, Niels Halama, Nino Fejzibegovic, Verena The… , 2019. - 7 S.
In: Breast care, ISSN 1661-3805. 14(2019), 1, Seite 53-59
DOI: 10.1159/000492580
- Erkek, Serap: Comprehensive analysis of chromatin states in atypical teratoid/rhabdoid tumor identifies diverging roles for SWI/SNF and polycomb in gene regulation / Serap Erkek, Pascal D. Johann, Martina A. Finetti, Yiannis Drosos, Hsien-Chao Chou, Marc Zapatka, Do… , 2019. - 25 S.
In: Cancer cell, ISSN 1878-3686. 35(2019,1) Seite 95-110.e8, 16 Seiten
DOI: 10.1016/j.ccell.2018.11.014
- Lee, Catherine: Lsd1 as a therapeutic target in Gfi1-activated medulloblastoma / Catherine Lee, Vasilisa A. Rudneva, Serap Erkek, Marc Zapatka, Lianne Q. Chau, Silvia K. Tacheva-Gri… , 18 January 2019. - 13 S.
In: Nature Communications, ISSN 2041-1723. 10(2019) Artikel-Nummer 332, 13 Seiten
DOI: 10.1038/s41467-018-08269-5
- Gröbner, Susanne: Author correction: The landscape of genomic alterations across childhood cancers / Susanne N. Gröbner, Barbara C. Worst, Joachim Weischenfeldt, Ivo Buchhalter, Kortine Kleinheinz, Vas… , 06 June 2018. - 1 S.
In: Nature, ISSN 1476-4687. 559(2018), 7714, Seite E10-E10
DOI: 10.1038/s41586-018-0167-2
- Ratnaparkhe, Manasi: Defective DNA damage repair leads to frequent catastrophic genomic events in murine and human tumors / Manasi Ratnaparkhe, John K. L. Wong, Pei-Chi Wei, Mario Hlevnjak, Thorsten Kolb, Milena Simovic, Dan… , 2018. - 13 S.
In: Nature Communications, ISSN 2041-1723. 9(2018) Artikel-Nummer 4760, 13 Seiten
DOI: 10.1038/s41467-018-06925-4
- Haderk, Franziska: Tumor-derived exosomes modulate PD-L1 expression in monocytes / Franziska Haderk, Ralph Schulz, Murat Iskar, Laura Llaó Cid, Thomas Worst, Karolin V. Willmund, Ange… , 28 July 2017. - 11 S.
In: Science immunology, ISSN 2470-9468. 2(2017), 13, Artikel-ID eaah5509, Seite 1-11
DOI: 10.1126/sciimmunol.aah5509
- Huang, Zhiqin: confFuse : high-confidence fusion gene detection across tumor entities / Zhiqin Huang, David T.W. Jones, Yonghe Wu, Peter Lichter and Marc Zapatka, 29 September 2017. - 10 S.
In: Frontiers in genetics, ISSN 1664-8021. 8(2017) Artikel-Nummer 137, 10 Seiten
DOI: 10.3389/fgene.2017.00137
- Mack, Stephen C.: Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling / Stephen C. Mack, Kristian W. Pajtler, Lukas Chavez, Konstantin Okonechnikov, Kelsey C. Bertrand, Xiu… , 2018. - 5 S.
In: Nature, ISSN 1476-4687. 553(2018), 7686, Seite 101-105
DOI: 10.1038/nature25169
- Ernst, Aurélie: Telomere dysfunction and chromothripsis / Aurélie Ernst, David T.W. Jones, Kendra K. Maass, Agata Rode, Katharina I. Deeg, Billy Michael Chell… , 9 Feb 2016. - 10 S.
In: International journal of cancer, ISSN 1097-0215. 138(2016), 12, Seite 2905-2914
DOI: 10.1002/ijc.30033
- Lin, Charles Y.: Active medulloblastoma enhancers reveal subgroup-specific cellular origins / Charles Y. Lin, Serap Erkek, Yiai Tong, Linlin Yin, Alexander J. Federation, Marc Zapatka, Parthiv H… , 27 January 2016. - 6 S.
In: Nature, ISSN 1476-4687. 530(2016), 7588, Seite 57-62
DOI: 10.1038/nature16546
- Koşaloğlu, Zeynep: In silico SNP analysis of the breast cancer antigen NY-BR-1 / Zeynep Kosaloglu, Julia Bitzer, Niels Halama, Zhiqin Huang, Marc Zapatka, Andreas Schneeweiss, Dirk … . -
London; Berlin; Heidelberg: BioMed Central, 18 November 2016. - 1 Online-Ressource (12 Seiten)
DOI: 10.1186/s12885-016-2924-7
- Zuckermann, Marc: Somatic CRISPR/Cas9-mediated tumour suppressor disruption enables versatile brain tumour modelling / Marc Zuckermann, Volker Hovestadt, Christiane B. Knobbe-Thomsen, Marc Zapatka, Paul A. Northcott, Ka… , 11 June 2015. - 9 S.
In: Nature Communications, ISSN 2041-1723. 6(2015), Artikel-ID 7391, Seite 1-9
DOI: 10.1038/ncomms8391
- Hovestadt, Volker: Decoding the regulatory landscape of medulloblastoma using DNA methylation sequencing / Volker Hovestadt, David T.W. Jones, Simone Picelli, Wei Wang, Marcel Kool, Paul A. Northcott, Marc S… , 2014. - 5 S.
In: Nature, ISSN 1476-4687. 510(2014), 7506, Seite 537-541
DOI: 10.1038/nature13268
- Rieber, Nora: Coverage bias and sensitivity of variant calling for four whole-genome sequencing technologies / Nora Rieber, Marc Zapatka, Bärbel Lasitschka, David Jones, Paul Northcott, Barbara Hutter, Natalie J… , June 11, 2013. - 11 S.
In: PLOS ONE, ISSN 1932-6203. 8(2013), 6, Artikel-ID e66621, Seite 1-11
DOI: 10.1371/journal.pone.0066621
- Hovestadt, Volker: Robust molecular subgrouping and copy-number profiling of medulloblastoma from small amounts of archival tumour material using high-density DNA methylation arrays / Volker Hovestadt, Marc Remke, Marcel Kool, Torsten Pietsch, Paul A. Northcott, Roger Fischer, Floren… , 14 May 2013. - 4 S.
In: Acta neuropathologica, ISSN 1432-0533. 125(2013), 6, Seite 913-916
DOI: 10.1007/s00401-013-1126-5
- Wu, Hui: Tumor-microenvironment interactions studied by zonal transcriptional profiling of squamous cell lung carcinoma / Hui Wu, Daniel Haag, Thomas Muley, Arne Warth, Marc Zapatka, Grischa Toedt, Armin Pscherer, Meinhard… , 2013. - 15 S.
In: Genes, chromosomes & cancer, ISSN 1098-2264. 52(2013), 3, Seite 250-264
DOI: 10.1002/gcc.22025
- Dreidax, Daniel: Low p14ARF expression in neuroblastoma cells is associated with repressed histone mark status, and enforced expression induces growth arrest and apoptosis / Daniel Dreidax, Sina Gogolin, Christina Schroeder, Daniel Muth, Lena Marie Brueckner, Elisa Maria He… , January 23, 2013. - 11 S.
In: Human molecular genetics, ISSN 1460-2083. 22(2013), 9, Seite 1735-1745
DOI: 10.1093/hmg/ddt020
- Bender, Sebastian: Reduced H3K27me3 and DNA hypomethylation are major drivers of gene expression in K27M mutant pediatric high-grade gliomas / Sebastian Bender, Yujie Tang, Anders M. Lindroth, Volker Hovestadt, David T.W. Jones, Marcel Kool, M… , October 31, 2013. - 13 S.
In: Cancer cell, ISSN 1878-3686. 24(2013), 5, Seite 660-672
DOI: 10.1016/j.ccr.2013.10.006
- Jones, David T. W.: Dissecting the genomic complexity underlying medulloblastoma / David T.W. Jones, Natalie Jäger, Marcel Kool, Thomas Zichner, Barbara Hutter, Marc Sultan, Yoon-Jae … , 2012. - 6 S.
In: Nature, ISSN 0028-0836. 488(2012), 7409 vom: 20. Juni, Seite 100-105
- Becker, Jürgen C.: Survivin-specific T-cell reactivity correlates with tumor response and patient survival : a phase-II peptide vaccination trial in metastatic melanoma / Jürgen C. Becker, Mads H. Andersen, Valeska Hofmeister-Müller, Marion Wobser, Lidia Frey, Christiane… , 8 May 2012. - 13 S.
In: Cancer immunology immunotherapy, ISSN 1432-0851. 61(2012), 11, Seite 2091-2103
DOI: 10.1007/s00262-012-1266-9
- Jones, David T. W.: Dissecting the genomic complexity underlying medulloblastoma / David T.W. Jones, Natalie Jäger, Marcel Kool, Thomas Zichner, Barbara Hutter, Marc Sultan, Yoon-Jae … , 25 July 2012. - 6 S.
In: Nature, ISSN 1476-4687. 488(2012), 7409, Seite 100-105
DOI: 10.1038/nature11284
- Schwartzentruber, Jeremy: Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma / Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T.W. Jones, Elke Pfaff, Karine Jacob… , 29 January 2012. - 6 S.
In: Nature, ISSN 1476-4687. 482(2012), 7384, Seite 226-231
DOI: 10.1038/nature10833
- Wolf, Thomas: Proteomic bronchiolitis obliterans syndrome risk monitoring in lung transplant recipients / Thomas Wolf, Tonio Oumeraci, Jens Gottlieb, Andreas Pich, Benedikt Brors, Roland Eils, Axel Haverich… , August 27, 2011. - 9 S.
In: Transplantation, ISSN 1534-6080. 92(2011), 4, Seite 477-485
DOI: 10.1097/TP.0b013e318224c109
- Schrama, David: Merkel cell polyomavirus status is not associated with clinical course of Merkel cell carcinoma / David Schrama, Wiebke K. Peitsch, Marc Zapatka, Hermann Kneitz, Roland Houben, Steffi Eib, Sebastian… , [August 2011]. - 8 S. : Illustrationen
In: The journal of investigative dermatology, ISSN 1523-1747. 131(2011), 8 vom: Aug., Seite 1631-1638
DOI: 10.1038/jid.2011.115
- Oumeraci, Tonio: Bronchoalveolar lavage fluid of lung cancer patients : mapping the uncharted waters using proteomics technology / Tonio Oumeraci, Bernd Schmidt, Thomas Wolf, Marc Zapatka, Andreas Pich, Benedikt Brors, Roland Eils,… , 18 February 2011. - 3 S.
In: Lung cancer, ISSN 1872-8332. 72(2011), 1 vom: Apr., Seite 136-138
DOI: 10.1016/j.lungcan.2011.01.015
- Goidts, Violaine: RNAi screening in glioma stem-like cells identifies PFKFB4 as a key molecule important for cancer cell survival / V Goidts, J Bageritz, L Puccio, S Nakata, M Zapatka, S Barbus, G Toedt, B Campos, A Korshunov, S Mom… , 2012. - 9 S.
In: Oncogene, ISSN 1476-5594. 31(2012), 27, Seite 3235-3243
DOI: 10.1038/onc.2011.490
- Roesch Ely, Mariana: Proteomic analysis of field cancerization in pharynx and oesophagus : a prospective pilot study / Mariana Roesch-Ely, Alexandra Leipold, Matthias Nees, Dana Holzinger, Andreas Dietz, Christa Flechte… , 26 May 2010. - 9 S.
In: The journal of pathology, ISSN 1096-9896. 221(2010), 4 vom: Aug., Seite 462-470
DOI: 10.1002/path.2726
- Hoffmann, Georg: Data-Mining in klinischen Datensätzen : Bericht der Arbeitsgruppe Bioinformatik der DGKL / Georg Hoffmann, Marc Zapatka, Peter Findeisen, Stefan Wörner, Peter Martus, Michael Neumaier, 22. Juli 2010. - 7 S. : Illustrationen
In: Laboratoriumsmedizin, ISSN 1439-0477. 34(2010), 4 vom: Juli, Seite 227-233
DOI: 10.1515/jlm.2010.041
