heiBIB: Wade, Rebecca C.

Wade, Rebecca C. Prof. Dr.Universität HeidelbergHeidelberg

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Publications in heiBIB

D'Arrigo, Giulia: Computational screening of the effects of mutations on protein-protein off-rates and dissociation mechanisms by τRAMD / Giulia D'Arrigo, Daria B. Kokh, Ariane Nunes-Alves, Rebecca C. Wade, [17 September 2024]. - 15 S.
In: Communications biology, ISSN 2399-3642. 7(2024), Artikel-ID 1159, Seite 1-15
DOI: 10.1038/s42003-024-06880-5
Han, Sungho Bosco: Multiresolution molecular dynamics simulations reveal the interplay between conformational variability and functional interactions in membrane-bound cytochrome P450 2B4 / Sungho Bosco Han, Jonathan Teuffel, Goutam Mukherjee, Rebecca C. Wade, [18 September 2024]. - 23 S.
In: Protein science, ISSN 1469-896X. 33(2024), 10, Artikel-ID e5165, Seite e5165-1-e5165-23
DOI: 10.1002/pro.5165
Charou, Despoina: Comprehensive characterization of the neurogenic and neuroprotective action of a novel TrkB agonist using mouse and human stem cell models of Alzheimer’s disease / Despoina Charou, Thanasis Rogdakis, Alessia Latorrata, Maria Valcarcel, Vasileios Papadogiannis, Chr… , 06 July 2024. - 20 S. : Illustrationen
In: Stem cell research & therapy, ISSN 1757-6512. 15(2024), Artikel-ID 200, Seite 1-20
DOI: 10.1186/s13287-024-03818-w
Guerra, Jessica: Impact of an irreversible β-galactosylceramidase inhibitor on the lipid profile of zebrafish embryos / Jessica Guerra, Mirella Belleri, Giulia Paiardi, Chiara Tobia, Davide Capoferri, Marzia Corli, Elisa… , December 2024. - 11 S. : Illustrationen, Diagramme
In: Computational and structural biotechnology journal, ISSN 2001-0370. 23(2024) vom: Dez., Seite 1397-1407
DOI: 10.1016/j.csbj.2024.03.023
Wade, Rebecca C.: Editorial : the Journal of molecular recognition : changing of the guard / author contribution, Rebecca C. Wade: conceptualization and writing, May 2024. - 1 S.
In: Journal of molecular recognition, ISSN 1099-1352. 37(2024), 3 vom: Mai, Seite e3081
DOI: 10.1002/jmr.3081
Mukesh, Sumit: Comparative analysis of drug-salt-polymer interactions by experiment and molecular simulation improves biopharmaceutical performance / Sumit Mukesh, Goutam Mukherjee, Ridhima Singh, Nathan Steenbuck, Carolina Demidova, Prachi Joshi, Ab… , 25 September 2023. - 18 S. : Illustrationen
In: Communications chemistry, ISSN 2399-3669. 6(2023), Artikel-ID 201, Seite 1-18
DOI: 10.1038/s42004-023-01006-0
Roussaki, Marina: Design, synthesis and biological evaluation of antiparasitic dinitroaniline-ether phospholipid hybrids / Marina Roussaki, George E. Magoulas, Theano Fotopoulou, Nuno Santarem, Emile Barrias, Ina Pöhner, Sa… , September 2023. - 18 S. : Illustrationen
In: Bioorganic chemistry, ISSN 1090-2120. 138(2023) vom: Sept., Artikel-ID 106615, Seite 1-18
DOI: 10.1016/j.bioorg.2023.106615
Tanvir Rahman, Mohammad: An engineered variant of MECR reductase reveals indispensability of long-chain acyl-ACPs for mitochondrial respiration / M. Tanvir Rahman, M. Kristian Koski, Joanna Panecka-Hofman, Werner Schmitz, Alexander J. Kastaniotis… , 04 February 2023. - 15 S.
In: Nature Communications, ISSN 2041-1723. 14(2023), Artikel-ID 619, Seite 1-15
DOI: 10.1038/s41467-023-36358-7
Gómez, Guillermo: PfCRT mutations conferring piperaquine resistance in falciparum malaria shape the kinetics of quinoline drug binding and transport / Guillermo M. Gomez, Giulia D’Arrigo, Cecilia P. Sanchez, Fiona Berger, Rebecca C. Wade, Michael Lanz… , June 7, 2023. - 35 S. : Illustrationen
In: PLoS pathogens, ISSN 1553-7374. 19(2023), 6, Artikel-ID e1011436, Seite 1-35
DOI: 10.1371/journal.ppat.1011436
Costantino, Luca: Destabilizers of the thymidylate synthase homodimer accelerate its proteasomal degradation and inhibit cancer growth / Luca Costantino, Stefania Ferrari, Matteo Santucci, Outi MH Salo-Ahen, Emanuele Carosati, Silvia Fra… , 07 December 2022. - 57 S.
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e73862, Seite 1-57
DOI: 10.7554/eLife.73862
Dey, Debabrata: Diffusion of small molecule drugs is affected by surface interactions and crowder proteins / Debabrata Dey, Ariane Nunes-Alves, Rebecca C. Wade, and Gideon Schreiber, 16 September 2022. - 24 S.
In: iScience, ISSN 2589-0042. 25(2022), 10, Artikel-ID 105088, Seite 1-24
DOI: 10.1016/j.isci.2022.105088
Panecka-Hofman, Joanna: Anti-trypanosomatid structure-based drug design - lessons learned from targeting the folate pathway / Joanna Panecka-Hofman, Ina Poehner, Rebecca C. Wade, 07 Oct 2022. - 17 S.
In: Expert opinion on drug discovery, ISSN 1746-045X. 17(2022), 9, Seite 1029-1045
DOI: 10.1080/17460441.2022.2113776
Schmidt, Hanno: Identification of antiparasitic drug targets using a multi-omics workflow in the acanthocephalan model / Hanno Schmidt, Katharina Mauer, Manuel Glaser, Bahram Sayyaf Dezfuli, Sören Lukas Hellmann, Ana Lúci… , 30 September 2022. - 16 S.
In: BMC genomics, ISSN 1471-2164. 23(2022), Artikel-ID 677, Seite 1-16
DOI: 10.1186/s12864-022-08882-1
Mendes de Almeida, Marcus Fabiano: Match Tope : a tool to predict the cross reactivity of peptides complexed with Major Histocompatibility Complex I / Marcus Fabiano de Almeida Mendes, Marcelo de Souza Bragatte, Priscila Vianna, Martiela Vaz de Freita… , 28 October 2022. - 10 S.
In: Frontiers in immunology, ISSN 1664-3224. 13(2022), Artikel-ID 930590, Seite 1-10
DOI: 10.3389/fimmu.2022.930590
Rogdakis, Thanasis: Development and biological characterization of a novel selective TrkA agonist with neuroprotective properties against amyloid toxicity / Thanasis Rogdakis, Despoina Charou, Alessia Latorrata, Eleni Papadimitriou, Alexandros Tsengenes, Ch… , 6 March 2022. - 27 S.
In: Biomedicines, ISSN 2227-9059. 10(2022), 3, Artikel-ID 614, Seite 1-27
DOI: 10.3390/biomedicines10030614
Pöhner, Ina: Multitarget, selective compound design yields potent inhibitors of a kinetoplastid pteridine reductase 1 / Ina Pöhner, Antonio Quotadamo, Joanna Panecka-Hofman, Rosaria Luciani, Matteo Santucci, Pasquale Lin… , June 8, 2022. - 23 S.
In: Journal of medicinal chemistry, ISSN 1520-4804. 65(2022), 13, Seite 9011-9033
DOI: 10.1021/acs.jmedchem.2c00232
Eriksson, Olivia: Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows / Olivia Eriksson, Upinder Singh Bhalla, Kim T. Blackwell, Sharon M. Crook, Daniel Keller, Andrei Kram… , 06 July 2022. - 31 S.
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e69013, Seite 1-31
DOI: 10.7554/eLife.69013
Eisenberg, Philip: The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN is a potential new drug target in Streptococcus pyogenes / Philip Eisenberg, Leon Albert, Jonathan Teuffel, Eric Zitzow, Claudia Michaelis, Jane Jarick, Clemen… , 15 February 2022. - 18 S.
In: Frontiers in microbiology, ISSN 1664-302X. 13(2022), Artikel-ID 802427, Seite 1-18
DOI: 10.3389/fmicb.2022.802427
Paiardi, Giulia: The binding of heparin to spike glycoprotein inhibits SARS-CoV-2 infection by three mechanisms / Giulia Paiardi, Stefan Richter, Pasqua Oreste, Chiara Urbinati, Marco Rusnati, and Rebecca C. Wade, 2022. - 14 S.
In: The journal of biological chemistry, ISSN 1083-351X. 298(2022), 2, Artikel-ID 101507, Seite 1-14
DOI: 10.1016/j.jbc.2021.101507
Sadiq, Kashif: Multiscale approach for computing gated ligand binding from molecular dynamics and Brownian dynamics simulations / S. Kashif Sadiq, Abraham Muñiz Chicharro, Patrick Friedrich, and Rebecca C. Wade, November 5, 2021. - 18 S.
In: Journal of chemical theory and computation, ISSN 1549-9626. 17(2021), 12 vom: Dez., Seite 7912-7929
DOI: 10.1021/acs.jctc.1c00673
Bianciotto, Marc: Contact map fingerprints of protein-ligand unbinding trajectories reveal mechanisms determining residence times computed from scaled molecular dynamics / Marc Bianciotto, Paraskevi Gkeka, Daria B. Kokh, Rebecca C. Wade, and Hervé Minoux, September 8, 2021. - 14 S.
In: Journal of chemical theory and computation, ISSN 1549-9626. 17(2021), 10, Seite 6522-6535
DOI: 10.1021/acs.jctc.1c00453
Kokh, Daria B.: G protein-coupled receptor-ligand dissociation rates and mechanisms from τRAMD simulations / Daria B. Kokh and Rebecca C. Wade, September 8, 2021. - 14 S.
In: Journal of chemical theory and computation, ISSN 1549-9626. 17(2021), 10 vom: Okt., Seite 6610-6623
DOI: 10.1021/acs.jctc.1c00641
De, Madhura: DNA sequence-dependent positioning of the linker histone in a nucleosome : a single-pair FRET study / Madhura De, Mehmet Ali Öztürk, Sebastian Isbaner, Katalin Tóth, and Rebecca C. Wade, 20 July 2021. - 17 S.
In: Biophysical journal, ISSN 1542-0086. 120(2021), 17, Seite 3747-3763
DOI: 10.1016/j.bpj.2021.07.012
Nunes-Alves, Ariane: Prediction of the drug-target binding kinetics for flexible proteins by comparative binding energy analysis / Ariane Nunes-Alves, Fabian Ormersbach, and Rebecca C. Wade, July 1, 2021. - 14 S.
In: Journal of chemical information and modeling, ISSN 1549-960X. 61(2021), 7, Seite 3708-3721
DOI: 10.1021/acs.jcim.1c00639
Reinhardt, Martin: Brownian dynamics simulations of proteins in the presence of surfaces : Long-Range Electrostatics and Mean-Field Hydrodynamics / Martin Reinhardt, Neil J. Bruce, Daria B. Kokh, and Rebecca C. Wade, 8 June 2021. - 15 S.
In: Journal of chemical theory and computation, ISSN 1549-9626. 17(2021), 6, Seite 3510-3524
DOI: 10.1021/acs.jctc.0c01312
Paiardi, Giulia: A bittersweet computational journey among glycosaminoglycans / Giulia Paiardi, Maria Milanesi, Rebecca C. Wade, Pasqualina D’Ursi and Marco Rusnati, 15 May 2021. - 22 S.
In: Biomolecules, ISSN 2218-273X. 11(2021), 5, Artikel-ID 739, Seite 1-22
DOI: 10.3390/biom11050739
Dey, Debabrata: Line-FRAP, a versatile method to measure diffusion rates in vitro and in vivo / Debabrata Dey, Shir Marciano, Ariane Nunes-Alves, Vladimir Kiss, Rebecca C. Wade and Gideon Schreibe… , 27 February 2021. - 20 S.
In: Journal of molecular biology, ISSN 1089-8638. 433(2021), 9, Artikel-ID 166898, Seite 1-20
DOI: 10.1016/j.jmb.2021.166898
Moreau, Catherine: A function of profilin in force generation during malaria parasite motility that is independent of actin binding / Catherine A. Moreau, Katharina A. Quadt, Henni Piirainen, Hirdesh Kumar, Saligram P. Bhargav, Léanne… , 2021. - 12 S.
In: Journal of cell science, ISSN 1477-9137. 134(2021), 5, Artikel-ID jcs233775, Seite 1-12
DOI: 10.1242/jcs.233775
Mukherjee, Goutam: An electron transfer competent structural ensemble of membrane-bound cytochrome P450 1A1 and cytochrome P450 oxidoreductase / Goutam Mukherjee, Prajwal P. Nandekar & Rebecca C. Wade, 08 January 2021. - 13 S.
In: Communications biology, ISSN 2399-3642. 4(2021), Artikel-ID 55, Seite 1-13
DOI: 10.1038/s42003-020-01568-y
Aslam, Muhammad: Putative second hit rare genetic variants in families with seemingly GBA-associated Parkinson’s disease / Muhammad Aslam, Nirosiya Kandasamy, Anwar Ullah, Nagarajan Paramasivam, Mehmet Ali Öztürk, Saima Nau… , 05 January 2021. - 10 S.
In: npj Genomic Medicine, ISSN 2056-7944. 6(2021,1) Artikel-Nummer 2, 10 Seiten
DOI: 10.1038/s41525-020-00163-8
Berger, Benedict-Tilman: Structure-kinetic relationship reveals the mechanism of selectivity of FAK inhibitors over PYK2 / Benedict-Tilman Berger, Marta Amaral, Daria B. Kokh, Ariane Nunes-Alves, Djordje Musil, Timo Heinric… , January 25, 2021. - 20 S.
In: Cell chemical biology, ISSN 2451-9456. 28(2021), 5 vom: Mai, Seite 686-698.e1-e7
DOI: 10.1016/j.chembiol.2021.01.003
Diestelkötter-Bachert, Petra: Structural characterization of an Arf dimer interface : molecular mechanism of Arf-dependent membrane scission / Petra Diestelkoetter-Bachert, Rainer Beck, Inge Reckmann, Andrea Hellwig, Ana Garcia-Saez, Monika Ze… , 2020. - 14 S.
In: FEBS letters, ISSN 1873-3468. 594(2020), 14, Seite 2240-2253
DOI: 10.1002/1873-3468.13808
Holderbach, Stefan: RASPD+ : fast protein-ligand binding free energy prediction using simplified physicochemical features / Stefan Holderbach, Lukas Adam, B. Jayaram, Rebecca C. Wade and Goutam Mukherjee, 17 December 2020. - 14 S.
In: Frontiers in molecular biosciences, ISSN 2296-889X. 7(2020) Artikel-Nummer 601065, 14 Seiten
DOI: 10.3389/fmolb.2020.601065
Yuan, Jui-Hung: Druggability assessment in TRAPP using machine learning approaches / Jui-Hung Yuan, Sungho Bosco Han, Stefan Richter, Rebecca C. Wade and Daria B. Kokh, 27 February 2020. - 15 S.
In: Journal of chemical information and modeling, ISSN 1549-960X. 60(2020), 3, Seite 1685-1699
DOI: 10.1021/acs.jcim.9b01185
Nunes-Alves, Ariane: Recent progress in molecular simulation methods for drug binding kinetics / Ariane Nunes-Alves, Daria B Kokh and Rebecca C Wade, 6 August 2020. - 8 S.
In: Current opinion in structural biology. 64(2020), Seite 126-133
DOI: 10.1016/j.sbi.2020.06.022
Kokh, Daria B.: A workflow for exploring ligand dissociation from a macromolecule : efficient random acceleration molecular dynamics simulation and interaction fingerprint analysis of ligand trajectories / Daria B. Kokh, Bernd Doser, Stefan Richter, Fabian Ormersbach, Xingyi Cheng, and Rebecca C. Wade, 25 September 2020
In: The journal of chemical physics, ISSN 1089-7690. 153(2020,12) Artikel-Nummer 125102, 15 Seiten
DOI: 10.1063/5.0019088
Öztürk, Mehmet Ali: Computation of FRAP recovery times for linker histone : chromatin binding on the basis of Brownian dynamics simulations / Mehmet Ali Öztürk, Rebecca C. Wade, 28 May 2020. - 8 S.
In: Biochimica et biophysica acta, ISSN 1872-8006. 1864(2020,10) Artikel-Nummer 129653, 8 Seiten
DOI: 10.1016/j.bbagen.2020.129653
Mustafa, Ghulam: The effect of force-field parameters on cytochrome P450-membrane interactions : structure and dynamics / Ghulam Mustafa, Prajwal P. Nandekar, Goutam Mukherjee, Neil J. Bruc &, Rebecca C. Wade, 29 April 2020
In: Scientific reports, ISSN 2045-2322. 10(2020) Artikel-Nummer 7284, 11 Seiten
DOI: 10.1038/s41598-020-64129-7
Weidner, Philip: Myotubularin-related protein 7 activates peroxisome proliferator-activated receptor-gamma / Philip Weidner, Michaela Söhn, Torsten Schroeder, Laura Helm, Veronika Hauber, Tobias Gutting, Johan… , 10 June 2020. - 14 S.
In: Oncogenesis, ISSN 2157-9024. 9(2020), 6, Seite 1-14
DOI: 10.1038/s41389-020-0238-8
Öztürk, Mehmet Ali: Chromatosome structure and dynamics from molecular simulations / Mehmet Ali Ozturk, Madhura De, Vlad Cojocaru, Rebecca C. Wade, 2020. - 19 S.
In: Annual review of physical chemistry, ISSN 1545-1593. 71(2020), Seite 101-119
DOI: 10.1146/annurev-physchem-071119-040043
Mereghetti, Paolo: Correction to: Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules / Paolo Mereghetti, Michael Martinez and Rebecca C. Wade, 11 February 2020. - 1 S.
In: BMC Biophysics, ISSN 2046-1682. 12 (2020,1) Artikel-Nummer 2, 1 Seite
DOI: 10.1186/s13628-020-0026-z
Mustafa, Ghulam: Differing membrane interactions of two highly similar drug-metabolizing cytochrome P450 isoforms : CYP 2C9 and CYP 2C19 / Ghulam Mustafa, Prajwal P. Nandekar, Neil J. Bruce and Rebecca C. Wade, 4 September 2019. - 23 S.
In: International journal of molecular sciences, ISSN 1422-0067. 20(2019,18) Artikel-Nummer 4328, 23 Seiten
DOI: 10.3390/ijms20184328
Bruce, Neil J.: Regulation of adenylyl cyclase 5 in striatal neurons confers the ability to detect coincident neuromodulatory signals / Neil J. Bruce, Daniele Narzi, Daniel Trpevski, Siri C. van Keulen, Anu G. Nair, Ursula Röthlisberger… , October 30, 2019
In: PLoS Computational Biology, ISSN 1553-7358. 15(2019,10) Artikel-Nummer e1007382, 32 Seiten
DOI: 10.1371/journal.pcbi.1007382
Bruce, Neil J.: KBbox : a toolbox of computational methods for studying the kinetics of molecular binding / Neil J. Bruce, Gaurav K. Ganotra, Stefan Richter, and Rebecca C. Wade, 5 August 2019. - 5 S.
In: Journal of chemical information and modeling, ISSN 1549-960X. 59(2019), 9, Seite 3630-3634
DOI: 10.1021/acs.jcim.9b00485
Moraes, Carolina B.: Accelerating drug discovery efforts for trypanosomatidic infections using an integrated transnational academic drug discovery platform / Carolina B. Moraes, Gesa Witt, Maria Kuzikov, Bernhard Ellinger, Theodora Calogeropoulou, Kyriakos C… , March 1, 2019. - 16 S.
In: SLAS discovery, ISSN 2472-5560. 24(2019), 3, Seite 346-361
DOI: 10.1177/2472555218823171
Wodak, Shoshana J.: Allostery in its many disguises : from theory to applications / Shoshana J. Wodak, Emanuele Paci, Nikolay V. Dokholyan, Igor N. Berezovsky, Amnon Horovitz, Jing Li,… , 7 February 2019. - 13 S.
In: Structure, ISSN 1878-4186. 27(2019), 4, Seite 566-578
DOI: 10.1016/j.str.2019.01.003
Mustafa, Ghulam: Influence of transmembrane helix mutations on cytochrome P450-membrane interactions and function / Ghulam Mustafa, Prajwal P. Nandekar, Tyler J. Camp, Neil J. Bruce, Michael C. Gregory, Stephen G. Sl… , 3 January 2019. - 14 S.
In: Biophysical journal, ISSN 1542-0086. 116(2019), 3, Seite 419-432
DOI: 10.1016/j.bpj.2018.12.014
Tong, Rudi: Comparative electrostatic analysis of adenylyl cyclase for isoform dependent regulation properties : errata / Rudi Tong, Rebecca C. Wade, Neil J. Bruce, 25 April 2019. - 2 S.
In: Proteins, ISSN 1097-0134. 87(2019), 7, Seite 619-620
DOI: 10.1002/prot.25698
Kokh, Daria B.: Machine learning analysis of [tau]RAMD trajectories to decipher molecular determinants of drug-target residence times / Daria B. Kokh, Tom Kaufmann, Bastian Kister, Rebecca C. Wade, 24 May 2019. - 17 S.
In: Frontiers in molecular biosciences, ISSN 2296-889X. 6(2019) Artikel-Nummer 36, 17 Seiten
DOI: 10.3389/fmolb.2019.00036
Wade, Rebecca C.: Molecular modeling in drug design / Rebecca C. Wade and Outi M.H. Salo-Ahen, 17 January 2019. - 3 S.
In: Molecules, ISSN 1420-3049. 24(2019,2) Artikel-Nummer 321, 3 Seiten
DOI: 10.3390/molecules24020321
Öztürk, Mehmet Ali: Toward an ensemble view of chromatosome structure : a paradigm shift from one to many / Mehmet Ali Öztürk, Vlad Cojocaru, and Rebecca C. Wade, August 7, 2018. - 8 S. : Illustrationen
In: Structure, ISSN 1878-4186. 26(2018), 8, Seite 1050-1057
DOI: 10.1016/j.str.2018.05.009
Öztürk, Mehmet Ali: Dependence of chromatosome structure on Linker histone sequence and posttranslational modification / Mehmet Ali Öztürk, Vlad Cojocaru, Rebecca C. Wade, May 22, 2018. - 13 S.
In: Biophysical journal, ISSN 1542-0086. 114(2018), 10, Seite 2363-2375
DOI: 10.1016/j.bpj.2018.04.034
Begolo, Daniela: The trypanocidal benzoxaborole AN7973 inhibits trypanosome mRNA processing / Daniela Begolo, Isabel M. Vincent, Federica Giordani, Ina Pöhner, Michael J. Witty, Timothy G. Rowan… , September 25, 2018. - 33 S.
In: PLoS pathogens, ISSN 1553-7374. 14(2018,9) Artikel-Nummer e1007315, 33 Seiten
DOI: 10.1371/journal.ppat.1007315
Heroven, Christina: Halogen-aromatic π interactions modulate inhibitor residence times / Christina Heroven, Victoria Georgi, Gaurav K. Ganotra, Paul Brennan, Finn Wolfreys, Rebecca C. Wade,… , 30 March 2018. - 5 S.
In: Angewandte Chemie, ISSN 1521-3773. 57(2018), 24, Seite 7220-7224
DOI: 10.1002/anie.201801666
Ganotra, Gaurav K.: Prediction of drug-target binding kinetics by comparative binding energy analysis / Gaurav K. Ganotra and Rebecca C. Wade, October 4, 2018. - 6 S.
In: ACS medicinal chemistry letters, ISSN 1948-5875. 9(2018), 11, Seite 1134-1139
DOI: 10.1021/acsmedchemlett.8b00397
Schmidt, Tobias Thomas: A genetic screen pinpoints ribonucleotide reductase residues that sustain dNTP homeostasis and specifies a highly mutagenic type of dNTP imbalance / Tobias T. Schmidt, Sushma Sharma, Gloria X. Reyes, Kerstin Gries, Maike Gross, Boyu Zhao, Jui-Hung Y… , [10 January 2019]. - 16 S. : Illustrationen
In: Nucleic acids research, ISSN 1362-4962. 47(2019), 1, Seite 237-252
DOI: 10.1093/nar/gky1154
Sultan, Cheryl Sophia: Impact of carbonylation on glutathione peroxidase-1 activity in human hyperglycemic endothelial cells / Cheryl S. Sultan, Andrea Saackel, Antonia Stank, Thomas Fleming, Maria Fedorova, Ralf Hoffmann, Rebe… , 01 March 2018. - 10 S.
In: Redox Biology, ISSN 2213-2317. 16(2018), Seite 113-122
DOI: 10.1016/j.redox.2018.02.018
Douglas, Ross G.: Inter-subunit interactions drive divergent dynamics in mammalian and Plasmodium actin filaments / Ross G. Douglas, Prajwal Nandekar, Julia-Elisabeth Aktories, Hirdesh Kumar, Rebekka Weber, Julia M. … , July 16, 2018. - 30 S.
In: PLoS biology, ISSN 1545-7885. 16(2018,7) Artikel-Nummer e2005345, 30 Seiten
DOI: 10.1371/journal.pbio.2005345
Kokh, Daria B.: Estimation of drug-target residence times by t-random acceleration molecular dynamics simulations / Daria B. Kokh, Marta Amaral, Joerg Bomke, Ulrich Grädler, Djordje Musil, Hans-Peter Buchstaller, Mat… , 16 May 2018. - 11 S.
In: Journal of chemical theory and computation, ISSN 1549-9626. 14(2018), 7, Seite 3859-3869
DOI: 10.1021/acs.jctc.8b00230
Öztürk, Mehmet Ali: Drosophila melanogaster linker histone (dH1) binding to the nucleosome / Mehmet Ali Öztürk, Vlad Cojocaru, and Rebecca C. Wade, 2017. - 3 S. : Illustrationen
In: Proceedings of the 3rd bwHPC-Symposium. (2017), Seite 100-102
DOI: 10.11588/HEIBOOKS.308.C3721
Pisa, Flavio Di: Chroman-4-one derivatives targeting pteridine reductase 1 and showing anti-parasitic activity / Flavio Di Pisa, Giacomo Landi, Lucia Dello Iacono, Cecilia Pozzi, Chiara Borsari, Stefania Ferrari, … , 8 March 2017. - 16 S.
In: Molecules, ISSN 1420-3049. 22(2017), 3, Artikel-ID 426
DOI: 10.3390/molecules22030426
Linciano, Pasquale: Exploiting the 2-Amino-1,3,4-thiadiazole Scaffold To Inhibit Trypanosoma brucei Pteridine Reductase in Support of Early-Stage Drug Discovery / Pasquale Linciano, Alice Dawson, Ina Pöhner, David M. Costa, Monica S. Sá, Anabela Cordeiro-da-Silva… , September 11, 2017. - 18 S.
In: ACS omega, ISSN 2470-1343. 2(2017), 9, Seite 5666-5683
DOI: 10.1021/acsomega.7b00473
Bruce, Neil J.: New approaches for computing ligand-receptor binding kinetics / Neil J Bruce, Gaurav K Ganotra, Daria B Kokh, S Kashif Sadiq and Rebecca C Wade, 2018. - 10 S.
In: Current opinion in structural biology. 49(2018), Seite 1-10
DOI: 10.1016/j.sbi.2017.10.001
Nillegoda, Nadinath B.: Evolution of an intricate J-protein network driving protein disaggregation in eukaryotes / Nadinath B Nillegoda, Antonia Stank, Duccio Malinverni, Niels Alberts, Anna Szlachcic, Alessandro Ba… , 15 May 2017
In: eLife, ISSN 2050-084X. 6(2017) Artikel-Nummer e24560, 28 Seiten
DOI: 10.7554/eLife.24560
Jedwabny, Wiktoria: Application of a simple quantum chemical approach to ligand fragment scoring for Trypanosoma brucei pteridine reductase 1 inhibition / Wiktoria Jedwabny, Joanna Panecka-Hofman, Edyta Dyguda-Kazimierowicz, Rebecca C. Wade, W. Andrzej So… , 07 July 2017. - 14 S.
In: Journal of computer aided molecular design, ISSN 1573-4951. 31(2017), 8, Seite 715-728
DOI: 10.1007/s10822-017-0035-4
Stank, Antonia: TRAPP webserver : predicting protein binding site flexibility and detecting transient binding pockets / Antonia Stank, Daria B. Kokh, Max Horn, Elena Sizikova, Rebecca Neil, Joanna Panecka, Stefan Richter… , 20 April 2017. - 6 S.
In: Nucleic acids research, ISSN 1362-4962. 45(2017), W1, Seite W325-W330
DOI: 10.1093/nar/gkx277
Panecka-Hofman, Joanna: Comparative mapping of on-targets and off-targets for the discovery of anti-trypanosomatid folate pathway inhibitors / Joanna Panecka-Hofman, Ina Pöhner, Francesca Spyrakis, Talia Zeppelin, Flavio Di Pisa, Lucia Dello I… , 20 September 2017. - 16 S.
In: Biochimica et biophysica acta, ISSN 1872-8006. 1861(2017), 12, Seite 3215-3230
DOI: 10.1016/j.bbagen.2017.09.012
Moreau, Catherine: A unique profilin-actin interface is important for malaria parasite motility / Catherine A. Moreau, Saligram P. Bhargav, Hirdesh Kumar, Katharina A. Quadt, Henni Piirainen, Léanne… , May 26, 2017. - 26 S.
In: PLoS pathogens, ISSN 1553-7374. 13(2017,5) Artikel-Nummer e1006412, 26 Seiten
DOI: 10.1371/journal.ppat.1006412
Schuetz, Doris A.: Kinetics for drug discovery : an industry-driven effort to target drug residence time / Doris A. Schuetz, Wilhelmus Egbertus Arnout de Witte, Yin Cheong Wong, Bernhard Knasmueller, Lars Ri… , 2017, Apr 13. - 16 S.
In: Drug discovery today, ISSN 1878-5832. 22(2017), 6, Seite 896-911
DOI: 10.1016/j.drudis.2017.02.002
Amaral, Marta: Protein conformational flexibility modulates kinetics and thermodynamics of drug binding / M. Amaral, D.B. Kokh, J. Bomke, A. Wegener, H.P. Buchstaller, H.M. Eggenweiler, P. Matias, C. Sirren… , 22 December 2017. - 14 S.
In: Nature Communications, ISSN 2041-1723. 8(2017) Artikel-Nummer 2276, 14 Seiten
DOI: 10.1038/s41467-017-02258-w
Özboyacı, Musa: Three steps to gold : mechanism of protein adsorption revealed by Brownian and molecular dynamics simulations / M. Ozboyaci, D.B. Kokh and R.C. Wade, 21 Mar 2016. - 10 S.
In: Physical chemistry, chemical physics, ISSN 1463-9084. 18(2016), 15, Seite 10191-10200
DOI: 10.1039/C6CP00201C
Öztürk, Mehmet Ali: Conformational selection and dynamic adaptation upon linker histone binding to the nucleosome / Mehmet Ali Öztürk, Georgi V. Pachov, Rebecca C. Wade and Vlad Cojocaru, 7 June 2016. - 15 S.
In: Nucleic acids research, ISSN 1362-4962. 44(2016), 14, Seite 6599-6613
DOI: 10.1093/nar/gkw514
Özboyacı, Musa: An efficient low storage and memory treatment of gridded interaction fields for simulations of macromolecular association / Musa Ozboyaci, Michael Martinez, and Rebecca C. Wade, July 27, 2016. - 15 S.
In: Journal of chemical theory and computation, ISSN 1549-9626. 12(2016), 9, Seite 4563-4577
DOI: 10.1021/acs.jctc.6b00350
Özboyacı, Musa: Modeling and simulation of protein-surface interactions : achievements and challenges / Musa Ozboyaci, Daria B. Kokh, Stefano Corni and Rebecca C. Wade, 29 January 2016. - 45 S.
In: Quarterly reviews of biophysics, ISSN 1469-8994. 49(2016) Artikel-Nummer e4, 45 Seiten
DOI: 10.1017/S0033583515000256
Gundić, Mario: Human DPP III - Keap1 interactions : a combined experimental and computational study / Mario Gundic, Antonija Tomic, Rebecca C. Wade, Mihaela Matovina, Zrinka Karacic, Sasa Kazazic, Sanja… , Apr. 2016. - 12 S.
In: Croatica chemica acta, ISSN 1334-417X. 89(2016), 2, Seite 217–228
Rafiullah, Rafiullah: Homozygous missense mutation in the LMAN2L gene segregates with intellectual disability in a large consanguineous Pakistani family / Rafiullah Rafiullah, Muhammad Aslamkhan, Nagarajan Paramasivam, Christian Thiel, Ghulam Mustafa, Ste… , 2016. - 7 S.
In: Journal of medical genetics, ISSN 1468-6244. 53(2016), 2, Seite 138-144
DOI: 10.1136/jmedgenet-2015-103179
Yu, Xiaofeng: Ligand tunnels in T. brucei and human CYP51 : Insights for parasite-specific drug design / Xiaofeng Yu, Prajwal Nandekar, Ghulam Mustafa, Vlad Cojocaru, Galina I. Lepesheva, Rebecca C. Wade, 19 October 2015. - 11 S.
In: Biochimica et biophysica acta, ISSN 1878-2434. 1860(2016), 1, Part A, Seite 67-78
DOI: 10.1016/j.bbagen.2015.10.015
Lensink, Marc F.: Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling : a CASP-CAPRI experiment / Marc F. Lensink, Sameer Velankar, Andriy Kryshtafovych, Shen-You Huang, Dina Schneidman-Duhovny, And… , 28 April 2016
In: Proteins, ISSN 1097-0134. 84(2016), S1, Seite 323-348
DOI: 10.1002/prot.25007
Subramanian, Sundar Raman: Identification of an electrostatic ruler motif for sequence-specific binding of collagenase to collagen / Sundar Raman Subramanian, Ettayapuram Ramaprasad Azhagiya Singam, Michael Berinski, Venkatesan Subra… , June 1, 2016. - 10 S.
In: The journal of physical chemistry, ISSN 1520-5207. 120(2016), 33, Seite 8580-8589
DOI: 10.1021/acs.jpcb.6b02573
Borsari, Chiara: Profiling of flavonol derivatives for the development of antitrypanosomatidic drugs / Chiara Borsari, Rosaria Luciani, Cecilia Pozzi, Ina Poehner, Stefan Henrich, Matteo Trande, Anabela … , July 14, 2016. - 19 S.
In: Journal of medicinal chemistry, ISSN 1520-4804. 59(2016), 16, Seite 7598-7616
DOI: 10.1021/acs.jmedchem.6b00698
Schibich, Daniela: Global profiling of SRP interaction with nascent polypeptides / Daniela Schibich, Felix Gloge, Ina Pöhner, Patrik Björkholm, Rebecca C. Wade, Gunnar von Heijne, Ber… , 3 August 2016. - 5 S.
In: Nature, ISSN 1476-4687. 536(2016), 7615, Seite 219-223
DOI: 10.1038/nature19070
Stank, Antonia: Protein binding pocket dynamics / Antonia Stank, Daria B. Kokh, Jonathan C. Fuller, and Rebecca C. Wade, April 25, 2016. - 7 S.
In: Accounts of chemical research, ISSN 1520-4898. 49(2016), 5, Seite 809-815
DOI: 10.1021/acs.accounts.5b00516
Kokh, Daria B.: Perturbation approaches for exploring protein binding site flexibility to predict transient binding pockets / Daria B. Kokh, Paul Czodrowski, Friedrich Rippmann and Rebecca C. Wade, July 11, 2016. - 14 S.
In: Journal of chemical theory and computation, ISSN 1549-9626. 12(2016), 8, Seite 4100-4113
DOI: 10.1021/acs.jctc.6b00101
Tong, Rudi: Comparative electrostatic analysis of adenylyl cyclase for isoform dependent regulation properties / Rudi Tong, Rebecca C. Wade and Neil J. Bruce, 26 September 2016. - 15 S.
In: Proteins, ISSN 1097-0134. 84(2016), 12, Seite 1844-1858
DOI: 10.1002/prot.25167
Stank, Antonia: ProSAT+ : visualizing sequence annotations on 3D structure / Antonia Stank, Stefan Richter, and Rebecca C. Wade, 20 July 2016. - 4 S.
In: Protein engineering design and selection, ISSN 1741-0134. 29(2016), 8, Seite 281-284
DOI: 10.1093/protein/gzw021
Gdynia, Georg: The HMGB1 protein induces a metabolic type of tumour cell death by blocking aerobic respiration / Georg Gdynia, Sven W. Sauer, Jürgen Kopitz, Dominik Fuchs, Katarina Duglova, Thorsten Ruppert, Matth… , 2016. - 13 S.
In: Nature Communications, ISSN 2041-1723. 7(2016) Artikel-Nr. 10764, 13 Seiten
DOI: 10.1038/ncomms10764
Garg, Divita: Conservation and role of electrostatics in thymidylate synthase / Divita Garg, Stephane Skouloubris, Julien Briffotaux, Hannu Myllykallio & Rebecca C. Wade, 27 November 2015. - 11 S.
In: Scientific reports, ISSN 2045-2322. 5(2015), Artikel-ID 17356, Seite 1-11
DOI: 10.1038/srep17356
Mustafa, Ghulam: On the application of the MARTINI coarse-grained model to immersion of a protein in a phospholipid bilayer / Ghulam Mustafa, Prajwal P. Nandekar, Xiaofeng Yu, and Rebecca C. Wade, 08 December 2015. - 12 S.
In: The journal of chemical physics, ISSN 1089-7690. 143(2015,24) Artikel-Nummer 243139, 12 Seiten
DOI: 10.1063/1.4936909
Yu, Xiaofeng: webSDA : a web server to simulate macromolecular diffusional association / Xiaofeng Yu, Michael Martinez, Annika L. Gable, Jonathan C. Fuller, Neil J. Bruce, Stefan Richter an… , 16 April 2015. - 5 S.
In: Nucleic acids research, ISSN 1362-4962. 43(2015), W1, Seite W220-W224
DOI: 10.1093/nar/gkv335
Yu, Xiaofeng: Dynamics of CYP51 : implications for function and inhibitor design / Xiaofeng Yu, Vlad Cojocaru, Ghulam Mustafa, Outi M. H. Salo‐Ahen, Galina I. Lepesheva and Rebecca C.… , 20 January 2015. - 15 S.
In: Journal of molecular recognition, ISSN 1099-1352. 28(2015), 2, Seite 59-73
DOI: 10.1002/jmr.2412
Salo-Ahen, Outi M. H.: Hotspots in an obligate homodimeric anticancer target : structural and functional effects of interfacial mutations in human thymidylate synthase / Outi M.H. Salo-Ahen, Anna Tochowicz, Cecilia Pozzi, Daniela Cardinale, Stefania Ferrari, Yap Boum, S… , March 23, 2015. - 10 S. : Illustrationen
In: Journal of medicinal chemistry, ISSN 1520-4804. 58(2015), 8, Seite 3572-3581
DOI: 10.1021/acs.jmedchem.5b00137
Romanowska, Julia: When the label matters : adsorption of labeled and unlabeled proteins on charged surfaces / Julia Romanowska, Daria B. Kokh, Rebecca C. Wade, October 22, 2015. - 6 S. : Illustrationen
In: Nano letters, ISSN 1530-6992. 15(2015), 11, Seite 7508-7513
DOI: 10.1021/acs.nanolett.5b03168
Tomić, Antonija: Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding / A. Tomić, M. Berynskyy, R.C. Wade and S. Tomić, 24 Aug 2015. - 13 S.
In: Molecular BioSystems, ISSN 1742-2051. 11(2015), 11, Seite 3068-3080
DOI: 10.1039/C5MB00465A
Seybold, Christian: Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope / Christian Seybold, Menattallah Elserafy, Diana Rüthnick, Musa Ozboyaci, Annett Neuner, Benjamin Flot… , June 15, 2015. - 19 S.
In: The journal of cell biology, ISSN 1540-8140. 209(2015), 6, Seite 843-861
DOI: 10.1083/jcb.201412050
Martinez, Michael: SDA 7 : a modular and parallel implementation of the simulation of diffusional association software / Michael Martinez, Neil J. Bruce, Julia Romanowska, Daria B. Kokh, Musa Ozboyaci, Xiaofeng Yu, Mehmet… , 29 June 2015. - 15 S.
In: Journal of computational chemistry, ISSN 1096-987X. 36(2015), 21, Seite 1631-1645
DOI: 10.1002/jcc.23971
Liu, Lei: A multiscale approach to simulating the conformational properties of unbound multi-C 2 H 2 zinc finger proteins / Lei Liu, Rebecca C. Wade, Dieter W. Heermann, 2015. - 12 S.
In: Proteins, ISSN 1097-0134. 83(2015), 9, Seite 1604-1615
DOI: 10.1002/prot.24845
Nillegoda, Nadinath B.: Crucial HSP70 co-chaperone complex unlocks metazoan protein disaggregation / Nadinath B. Nillegoda, Janine Kirstein, Anna Szlachcic, Mykhaylo Berynskyy, Antonia Stank, Florian S… , 2015. - 5 S.
In: Nature, ISSN 1476-4687. 524(2015), 7564, Seite 247-251
DOI: 10.1038/nature14884
Fuller, Jonathan C.: LigDig : a web server for querying ligand-protein interactions / Jonathan C. Fuller, Michael Martinez, Stefan Henrich, Antonia Stank, Stefan Richter and Rebecca C. W… , 2015. - 3 S.
In: Bioinformatics, ISSN 1367-4811. 31(2015), 7, Seite 1147-1149
DOI: 10.1093/bioinformatics/btu784
Mereghetti, Paolo: Long range Debye-Hückel correction for computation of grid-based electrostatic forces between biomacromolecules / Paolo Mereghetti, Michael Martinez and Rebecca C. Wade, 17 June 2014
In: BMC Biophysics, ISSN 2046-1682. 7(2014,1) Artikel-Nummer 4, 11 Seiten
DOI: 10.1186/2046-1682-7-4
Fuller, Jonathan C.: On calculation of the electrostatic potential of a phosphatidylinositol phosphate-containing phosphatidylcholine lipid membrane accounting for membrane dynamics / Jonathan C. Fuller, Michael Martinez, Rebecca C. Wade, August 20, 2014. - 11 S.
In: PLOS ONE, ISSN 1932-6203. 9(2014,8) Artikel-Nummer e104778, 11 Seiten
DOI: 10.1371/journal.pone.0104778
Feldman-Salit, Anna: Regulation of the activity of lactate dehydrogenases from four lactic acid bacteria / Anna Feldman-Salit, Silvio Hering, Hanan L. Messiha, Nadine Veith, Vlad Cojocaru, Antje Sieg, Hans V… , May 17, 2013. - 12 S.
In: The journal of biological chemistry, ISSN 1083-351X. 288(2013), 29, Seite 21295-21306
DOI: 10.1074/jbc.M113.458265
Sandıkcı, Arzu: Dynamic enzyme docking to the ribosome coordinates N-terminal processing with polypeptide folding / Arzu Sandikci, Felix Gloge, Michael Martinez, Matthias P. Mayer, Rebecca Wade, Bernd Bukau & Günter … , 16 June 2013. - 10 S.
In: Nature structural & molecular biology, ISSN 1545-9985. 20(2013), 7, Seite 843-850
DOI: 10.1038/nsmb.2615
Yu, Xiaofeng: Conformational diversity and ligand tunnels of mammalian cytochrome P450s / Xiaofeng Yu, Vlad Cojocaru, Rebecca C. Wade, 17 February 2013. - 12 S.
In: Biotechnology and applied biochemistry, ISSN 1470-8744. 60(2013), 1, Seite 134-145
DOI: 10.1002/bab.1074
Kokh, Daria B.: TRAPP : a tool for analysis of Transient binding Pockets in Proteins / Daria B. Kokh, Stefan Richter, Stefan Henrich, Paul Czodrowski, Friedrich Rippmann, and Rebecca C. W… , April 27, 2013. - 18 S.
In: Journal of chemical information and modeling, ISSN 1549-960X. 53(2013), 5, Seite 1235-1252
DOI: 10.1021/ci4000294
Gombos, Linda: GTP regulates the microtubule nucleation activity of γ-tubulin / Linda Gombos, Annett Neuner, Mykhaylo Berynskyy, Luca L. Fava, Rebecca C. Wade, Carsten Sachse and E… , 27 October 2013. - 11 S.
In: Nature cell biology, ISSN 1476-4679. 15(2013), 11, Seite 1317-1327
DOI: 10.1038/ncb2863
Garg, Divita: Translational repression of thymidylate synthase by targeting its mRNA / Divita Garg, Alexander V. Beribisky, Glauco Ponterini, Alessio Ligabue, Gaetano Marverti, Andrea Mar… , 18 February 2013. - 12 S.
In: Nucleic acids research, ISSN 1362-4962. 41(2013), 7, Seite 4159-4170
DOI: 10.1093/nar/gkt098
Balbo, Jessica: The shape of protein crowders is a major determinant of protein diffusion / Jessica Balbo, Paolo Mereghetti, Dirk-Peter Herten, and Rebecca C. Wade, 2 April 2013. - 9 S.
In: Biophysical journal, ISSN 1542-0086. 104(2013), 7, Seite 1576-1584
DOI: 10.1016/j.bpj.2013.02.041
Veith, Nadine: Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria / Nadine Veith, Anna Feldman-Salit, Vlad Cojocaru, Stefan Henrich, Ursula Kummer, Rebecca C. Wade, July 25, 2013. - 15 S.
In: PLOS ONE, ISSN 1932-6203. 9(2013,7) Artikel-Nummer e1003159, 15 Seiten
DOI: 10.1371/journal.pcbi.1003159
Ferrari, Stefania: Ligand-based discovery of N-(1,3-dioxo-1H,3H-benzo(de)isochromen-5-yl)-carboxamide and sulfonamide derivatives as thymidylate synthase A inhibitors / Stefania Ferrari, Marco Ingrami, Fabrizia Soragni, Rebecca C. Wade, M. Paola Costi, 2013. - 6 S.
In: Bioorganic & medicinal chemistry letters, ISSN 1464-3405. 23(2013), 3, Seite 663-668
DOI: 10.1016/j.bmcl.2012.11.117
Cojocaru, Vlad: Multiple, ligand-dependent routes from the active site of cytochrome P450 2C9 / Vlad Cojocaru, Peter J. Winn and Rebecca C. Wade, 01 March, 2012. - 12 S.
In: Current drug metabolism, ISSN 1875-5453. 13(2012), 2, Seite 143-154
DOI: 10.2174/138920012798918462
Mereghetti, Paolo: Atomic Detail Brownian Dynamics Simulations of Concentrated Protein Solutions with a Mean Field Treatment of Hydrodynamic Interactions / Paolo Mereghetti and Rebecca C. Wade, 26 July 2012. - 11 S.
In: The journal of physical chemistry, ISSN 1520-5207. 116(2012), 29, Seite 8523-8533
DOI: 10.1021/jp212532h
Biedermannová, Lada: A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB / Lada Biedermannová, Zbyněk Prokop, Artur Gora, Eva Chovancová, Mihály Kovács, Jiří Damborský and Reb… , June 28, 2012. - 13 S.
In: The journal of biological chemistry, ISSN 1083-351X. 287(2012), 34, Seite 29062-29074
DOI: 10.1074/jbc.M112.377853
Brancolini, Giorgia: Docking of ubiquitin to gold nanoparticles / Giorgia Brancolini, Daria B. Kokh, Luigi Calzolai, Rebecca C. Wade, Stefano Corni, 2012. - 16 S.
In: ACS nano, ISSN 1936-086X. 6(2012), 11, Seite 9863-9878
DOI: 10.1021/nn303444b
Feldman-Salit, Anna: Allosterically gated enzyme dynamics in the cysteine synthase complex regulate cysteine biosynthesis in Arabidopsis thaliana / Anna Feldman-Salit, Markus Wirtz, Esther D. Lenherr, Christian Throm, Michael Hothorn, Klaus Scheffz… , 8 Februar 2012. - 11 S.
In: Structure, ISSN 1878-4186. 20(2012), 2, Seite 292-302
DOI: 10.1016/j.str.2011.11.019
Oguchi, Yuki: A tightly regulated molecular toggle controls AAA+ disaggregase / Yuki Oguchi, Eva Kummer, Fabian Seyffer ... Regina Zahn, Rebecca C. Wade, Axel Mogk & Bernd Bukau, 2012. - 9 S.
In: Nature structural & molecular biology, ISSN 1545-9985. 19(2012), 12, Seite 1338-1346
DOI: 10.1038/nsmb.2441
Pachov, Georgi V.: On the structure and dynamics of the complex of the nucleosome and the linker histone / Georgi V. Pachov, Razif R. Gabdoulline and Rebecca C. Wade, 25 February 2011. - 9 S.
In: Nucleic acids research, ISSN 1362-4962. 39(2011), 12, Seite 5255-5263
DOI: 10.1093/nar/gkr101
Mereghetti, Paolo: Diffusion of hydrophobin proteins in solution and interactions with a graphite surface / Paolo Mereghetti and Rebecca C. Wade, 21 April 2011. - 11 S.
In: BMC Biophysics, ISSN 2046-1682. 4(2011), Artikel-ID 9, Seite 1-11
DOI: 10.1186/2046-1682-4-9
Mereghetti, Paolo: Diffusion and association processes in biological systems : theory, computation and experiment / Paolo Mereghetti, Daria Kokh, J. Andrew McCammon, Rebecca C. Wade, 02 March 2011. - 6 S.
In: BMC Biophysics, ISSN 2046-1682. 4(2011), Artikel-ID 2, Seite 1-6
DOI: 10.1186/2046-1682-4-2
Mereghetti, Paolo: Brownian dynamics simulation of protein solutions : structural and dynamical properties / Paolo Mereghetti, Razif R. Gabdoulline, and Rebecca C. Wade, 30 November 2010. - 10 S.
In: Biophysical journal, ISSN 1542-0086. 99(2010), 11 vom: Okt., Seite 3782-3791
DOI: 10.1016/j.bpj.2010.10.035
Wirtz, Markus: Structure and function of the hetero-oligomeric cysteine synthase complex in plants / Markus Wirtz, Hannah Birke, Corinna Heeg, Christopher Müller, Fabian Hosp, Christian Throm, Stephan … , August 18, 2010. - 18 S.
In: The journal of biological chemistry, ISSN 1083-351X. 285(2010), 43, Seite 32810-32817
DOI: 10.1074/jbc.M110.157446
Klipp, Edda: Biochemical network-based drug-target prediction / Edda Klipp, Rebecca C Wade and Ursula Kummer, 4th June 2010. - 6 S.
In: Current opinion in biotechnology, ISSN 1879-0429. 21(2010), 4, Seite 511-516
DOI: 10.1016/j.copbio.2010.05.004
Stein, Matthias: Cross-species analysis of the glycolytic pathway by comparison of molecular interaction fields / Matthias Stein, Razif R. Gabdoulline and Rebecca C. Wade, 7th September 2009. - 13 S.
In: Molecular BioSystems, ISSN 1742-2051. 6(2009), 1, Seite 162-174
DOI: 10.1039/B912398A
Feldman-Salit, Anna: A mechanistic model of the cysteine synthase complex / Anna Feldman-Salit, Markus Wirtz, Ruediger Hell and Rebecca C. Wade, 2009. - 23 S.
In: Journal of molecular biology, ISSN 1089-8638. 386(2009), 1, Seite 37-59
DOI: 10.1016/j.jmb.2008.08.075
Weidemann, Andreas: SYCAMORE : a systems biology computational analysis and modeling research environment / Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif Gabdoulline, Irin… , April 23, 2008. - 2 S.
In: Bioinformatics, ISSN 1367-4811. 24(2008), 12, Seite 1463-1464
DOI: 10.1093/bioinformatics/btn207

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