heiBIB: Wittbrodt, Joachim

Wittbrodt, Joachim Prof. Dr.Universität HeidelbergHeidelberg

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Publications in heiBIB

Pakari, Kaisa: Establishing an auxin-inducible GFP nanobody-based acute protein knockdown system to mimic hypomorphic mutations during early medaka embryogenesis / Kaisa Pakari, Sevinç Jakab, Encarnación Sánchez Salvador, Christian Thiel, Joachim Wittbrodt, Thomas… , May 23, 2025. - 22 S.
In: bioRxiv beta. (2025) vom: Mai, Artikel-ID 2025.05.23.655727, Seite 1-22
DOI: 10.1101/2025.05.23.655727
Gierten, Jakob: Natural genetic variation quantitatively regulates heart rate and dimension / Jakob Gierten, Bettina Welz, Tomas Fitzgerald, Thomas Thumberger, Rashi Agarwal, Oliver Hummel, Adri… , 30 April 2025. - 12 S. : Illustrationen
In: Nature Communications, ISSN 2041-1723. 16(2025), Artikel-ID 4062, Seite 1-12
DOI: 10.1038/s41467-025-59425-7
Welz, Bettina: Discovery and characterisation of gene by environment and epistatic genetic effects in a vertebrate model / Bettina Welz, Saul Pierotti, Tomas Fitzgerald, Thomas Thumberger, Risa Suzuki, Philip Watson, Jana F… , April 26, 2025. - 43 S.
In: bioRxiv beta. (2025) vom: Apr., Artikel-ID 2025.04.24.650462, Seite 1-43
DOI: 10.1101/2025.04.24.650462
Seleit, Ali: Modular control of vertebrate axis segmentation in time and space / Ali Seleit, Ian Brettell, Tomas Fitzgerald, Carina Vibe, Felix Loosli, Joachim Wittbrodt, Kiyoshi Na… , September 2024. - 24 S. : Illustrationen
In: The EMBO journal, ISSN 1460-2075. 43(2024), 18 vom: Sept., Seite 4068-4091
DOI: 10.1038/s44318-024-00186-2
Ferreira, Márcio Soares: FEHAT : efficient, large scale and automated heartbeat detection in Medaka fish embryos / Marcio Soares Ferreira, Sebastian Stricker, Tomas Fitzgerald, Jack Monahan, Fanny Defranoux, Philip … , December 2024. - 9 S. : Illustrationen
In: Bioinformatics, ISSN 1367-4811. 40(2024), 12 vom: Dez., Artikel-ID btae664, Seite 1-9
DOI: 10.1093/bioinformatics/btae664
Suzuki, Risa: Characterizing medaka visual features using a high-throughput optomotor response assay / Risa Suzuki, Jia Zheng Woo, Thomas Thumberger, Gero Hofmann, Joachim Wittbrodt, Tinatini Tavhelidse-… , June 28, 2024. - 14 S. : Illustrationen
In: PLOS ONE, ISSN 1932-6203. 19(2024), 6, Artikel-ID e0302092, Seite 1-14
DOI: 10.1371/journal.pone.0302092
Kairišs, Kristaps: Visualisation of gene expression within the context of tissues using an X-ray computed tomography-based multimodal approach / Kristaps Kairišs, Natalia Sokolova, Lucie Zilova, Christina Schlagheck, Robert Reinhardt, Tilo Baumb… , 12 April 2024. - 14 S. : Illustrationen
In: Scientific reports, ISSN 2045-2322. 14(2024), Artikel-ID 8543, Seite 1-14
DOI: 10.1038/s41598-024-58766-5
Afting, Cassian: DNA microbeads for spatio-temporally controlled morphogen release within organoids / Cassian Afting, Tobias Walther, Oliver M. Drozdowski, Christina Schlagheck, Ulrich S. Schwarz, Joach… , 9 September 2024. - 16 S. : Illustrationen
In: Nature nanotechnology, ISSN 1748-3395. (2024), Seite 1-16
DOI: 10.1038/s41565-024-01779-y
Walther, Tobias: DNA microbeads for spatio-temporally controlled morphogen release within organoids [research data] / Tobias Walther, Cassian Afting, Oliver M. Drozdowski, Christina Schlagheck, Ulrich S. Schwarz, Joach… . -
Heidelberg: Universität, 2024-08-30. - 1 Online-Ressource (24 Files)
DOI: 10.11588/data/T87EPK
Colombo, Federico: Two-photon laser printing to mechanically stimulate multicellular systems in 3D / Federico Colombo, Mohammadreza Taale, Fereydoon Taheri, Maria Villiou, Teresa Debatin, Gent Dulatahu… , May 10, 2024. - 13 S. : Illustrationen
In: Advanced functional materials, ISSN 1616-3028. 34(2024), 19 vom: Mai, Artikel-ID 2303601, Seite 1-13
DOI: 10.1002/adfm.202303601
Afting, Cassian: Minimal-invasive 3D laser printing of microimplants in organismo / Cassian Afting, Philipp Mainik, Clara Vazquez-Martel, Tobias Abele, Verena Kaul, Girish Kale, Kersti… , August 14, 2024. - 11 S. : Illustrationen
In: Advanced science, ISSN 2198-3844. 11(2024), 30 vom: Aug., Artikel-ID 2401110, Seite 1-11
DOI: 10.1002/advs.202401110
Afting, Cassian: Minimal-invasive 3D laser printing of microimplants in organismo [data] / Cassian Afting, Philipp Mainik, Clara Vázquez-Martel, Tobias Abele, Verena Kaul, Girish Kale, Kersti… . -
Heidelberg: Universität, 2024-06-13. - 1 Online-Ressource (2 Files)
DOI: 10.11588/data/MVBFOY
Wittbrodt, Joachim: Grenzerfahrungen : biohybride Systeme als Thema partizipativer Wissenschaftsethik / Jochen Wittbrodt, 2024-03-13. - 5 S.
In: Forum Marsilius-Kolleg, ISSN 2196-2839. 24(2024), 1, Seite 173-176
DOI: 10.11588/fmk.2024.24.103697
Suzuki, Risa: Characterizing medaka visual features using a high-throughput optomotor response assay / Risa Suzuki, Jia Zheng Woo, Thomas Thumberger, Gero Hofmann, Joachim Wittbrodt and Tinatini Tavhelid… , March 31, 2024. - 26 S. : Illustrationen
In: bioRxiv beta. (2024) vom: März, Artikel-ID 2024.03.28.587314, Seite 1-26
DOI: 10.1101/2024.03.28.587314
Schütz, Nils: (At the) limits of life!? : Ein Bericht zur Marsilius Academy 2023 / Nils Schütz, Jochen Wittbrodt, Thorsten Moos, 2024-03-13. - 7 S. : Illustrationen
In: Forum Marsilius-Kolleg, ISSN 2196-2839. 24(2024), 1, Seite 71-77
DOI: 10.11588/fmk.2024.24.103698
Medert, Rebekka: Efficient single copy integration via homology-directed repair (scHDR) by 5′modification of large DNA donor fragments in mice / Rebekka Medert, Thomas Thumberger, Tinatini Tavhelidse-Suck, Tobias Hub, Tanja Kellner, Yoko Oguchi,… , 22 February 2023. - 14 S. : Illustrationen
In: Nucleic acids research, ISSN 1362-4962. 51(2023), 3, Artikel-ID e14, Seite 1-14
DOI: 10.1093/nar/gkac1150
Pakari, Kaisa: CRISPR-Fortschritte : Schnitt für Schnitt zu neuen Möglichkeiten / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, 21 February 2023. - 4 S.
In: Biospektrum, ISSN 1868-6249. 29(2023), 1, Seite 25-28
DOI: 10.1007/s12268-023-1893-z
Gierten, Jakob: Natural genetic variation quantitatively regulates heart rate and dimension / Jakob Gierten, Bettina Welz, Tomas Fitzgerald, Thomas Thumberger, Oliver Hummel, Adrien Leger, Phili… , November 02, 2023. - 21 S.
In: bioRxiv beta. (2023), Artikel-ID 2023.09.01.555906, Seite 1-21
DOI: 10.1101/2023.09.01.555906
Doering, Lino: CRISPR-based knockout and base editing confirm the role of MYRF in heart development and congenital heart disease / Lino Doering, Alex Cornean, Thomas Thumberger, Joergen Benjaminsen, Beate Wittbrodt, Tanja Kellner, … , August 2023. - 14 S. : Illustrationen
In: Disease models & mechanisms, ISSN 1754-8411. 16(2023), 8 vom: Aug., Artikel-ID dmm049811, Seite 1-14
DOI: 10.1242/dmm.049811
Sokolova, Natalia: Unravelling the link between embryogenesis and adult stem cell potential in the ciliary marginal zone : a comparative study between mammals and teleost fish / Natalia Sokolova, Lucie Zilova, Joachim Wittbrodt, June 2023. - 9 S. : Illustrationen
In: Cells & development, ISSN 2667-2901. 174(2023) vom: Juni, Artikel-ID 203848, Seite 1-9
DOI: 10.1016/j.cdev.2023.203848
Xu, Ruiyao: N-glycosylation of LRP6 by B3GnT2 promotes Wnt/β-Catenin signalling / Ruiyao Xu, Xianxian Wang, Sadia Safi, Nico Braunegger, Agnes Hipgrave Ederveen, Michelle Rottmann, J… , 10 March 2023. - 21 S.
In: Cells, ISSN 2073-4409. 12(2023), 6 vom: März, Artikel-ID 863, Seite 1-21
DOI: 10.3390/cells12060863
Pakari, Kaisa: De novo PAM generation to reach initially inaccessible target sites for base editing / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, 2023. - 7 S.
In: Development, ISSN 1477-9129. 150(2023), 2, Artikel-ID dev201115, Seite 1-7
DOI: 10.1242/dev.201115
Pakari, Kaisa: The inceptionist’s guide to base editing : de novo PAM generation to reach initially inaccessible target-sites / Kaisa Pakari, Joachim Wittbrodt, Thomas Thumberger, July 07, 2022. - 18 S.
In: bioRxiv beta. (2022) vom: Juli, Artikel-ID 2022.07.07.499158, Seite 1-18
DOI: 10.1101/2022.07.07.499158
Thumberger, Thomas: Boosting targeted genome editing using the hei-tag / Thomas Thumberger, Tinatini Tavhelidse-Suck, Jose Arturo Gutierrez-Triana, Alex Cornean, Rebekka Med… , Mar 25, 2022. - 16 S. : Illustrationen
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e70558, Seite 1-16
DOI: 10.7554/eLife.70558
Beedgen, Lars: A rapid and simple procedure for the isolation and cultivation of fibroblast-like cells from medaka and zebrafish embryos and fin clip biopsies / Lars Beedgen, Andreas Hüllen, Sevinç Gücüm, Thomas Thumberger, Jochen Wittbrodt, Christian Thiel. -
London: Sage Publications, 21 Jun. 2022. - 1 Online-Ressource (9 Seiten)
DOI: 10.11588/heidok.00031793
Cornean, Alex: Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction / Alex Cornean, Jakob Gierten, Bettina Welz, Juan Luis Mateo, Thomas Thumberger, Joachim Wittbrodt, 04 April 2022. - 34 S.
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e72124, Seite 1-34
DOI: 10.7554/eLife.72124
Aghaallaei, Nargessadat: Antigen-presenting cells and T cells interact in a specific area of the intestinal mucosa defined by the Ccl25-Ccr9 axis in medaka / Narges Aghaallaei, Rashi Agarwal, Joergen Benjaminsen, Katharina Lust, Baubak Bajoghli, Joachim Witt… , 03 February 2022. - 11 S.
In: Frontiers in immunology, ISSN 1664-3224. 13(2022), Artikel-ID 812899, Seite 1-11
DOI: 10.3389/fimmu.2022.812899
Leger, Adrien: Genomic variations and epigenomic landscape of the medaka inbred Kiyosu-Karlsruhe (MIKK) panel / Adrien Leger, Ian Brettell, Jack Monahan, Carl Barton, Nadeshda Wolf, Natalja Kusminski, Cathrin Her… , 21 February 2022. - 24 S.
In: Genome biology, ISSN 1474-760X. 23(2022), Artikel-ID 58, Seite 1-24
DOI: 10.1186/s13059-022-02602-4
Fitzgerald, Tomas: The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel / Tomas Fitzgerald, Ian Brettell, Adrien Leger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl B… , 21 February 2022. - 32 S.
In: Genome biology, ISSN 1474-760X. 23(2022), Artikel-ID 59, Seite 1-32
DOI: 10.1186/s13059-022-02623-z
Kohärente, dosiseffiziente Röntgenbildgebung von biologischen Modellorganismen : Schlussbericht : Verbund: 05K2016 "CODE-VITA"$dZuwendungsempfänger: Centre for Organismal Studies (COS), Universität Heidelberg ; Projektleitung: Prof. Dr. Joachim Wittbrodt ; zusätzlicher Name: Frederike Seibold. -
[Heidelberg]: Universität Heidelberg, 20.08.2021. - 1 Online-Ressource (18 Seiten, 3,96 MB) : Illustrationen
DOI: 10.2314/KXP:1826639292
Kohärente, dosiseffiziente Röntgenbildgebung von biologischen Modellorganismen : Schlussbericht : Verbund: 05K2016 "CODE-VITA"$dZuwendungsempfänger: Centre for Organismal Studies (COS), Universität Heidelberg ; Projektleitung: Prof. Dr. Joachim Wittbrodt ; zusätzlicher Name: Frederike Seibold. -
[Heidelberg]: Universität Heidelberg, 20.08.2021. - 13, 4 Blätter : Illustrationen
Cornean, Alex: Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction / authors: Alex Cornean, Jakob Gierten, Bettina Welz, Juan L. Mateo, Thomas Thumberger, Joachim Wittbr… , July 26, 2021. - 63 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Juli, Artikel-ID 2021.07.26.453883, Seite 1-63
DOI: 10.1101/2021.07.26.453883
Hammouda, Omar: In vivo identification and validation of novel potential predictors for human cardiovascular diseases / Omar T. Hammouda, Meng Yue Wu, Verena Kaul, Jakob Gierten, Thomas Thumberger and Joachim Wittbrodt, June 21, 2021. - 42 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Juni, Artikel-ID 2021.02.03.429563, Seite 1-42
DOI: 10.1101/2021.02.03.429563
Thumberger, Thomas: Hei-tag: a highly efficient tag to boost targeted genome editing / Thomas Thumberger, Tinatini Tavhelidse, Jose Arturo Gutierrez-Triana, Rebekka Medert, Alex Cornean, … , June 10, 2021. - 19 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Juni, Artikel-ID 2021.05.27.445956, Seite 1-19
DOI: 10.1101/2021.05.27.445956
Fitzgerald, Tomas: The Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel / Tomas Fitzgerald, Ian Brettell, Adrien Leger, Nadeshda Wolf, Natalja Kusminski, Jack Monahan, Carl B… , May 21, 2021. - 34 S.
In: bioRxiv beta. (2021) vom: Mai, Artikel-ID 2021.05.17.444412, Seite 1-34
DOI: 10.1101/2021.05.17.444412
Medert, Rebekka: Efficient single copy integration via homology-directed repair (scHDR) by 5’modification of large DNA donor fragments in mice / Rebekka Medert, Thomas Thumberger, Tinatini Tavhelidse, Tobias Hub, Tanja Kellner, Yoko Oguchi, Sasc… , September 30, 2021. - 37 S. : Illustrationen
In: bioRxiv beta. (2021) vom: Sept., Artikel-ID 2021.09.30.462539, Seite 1-37
DOI: 10.1101/2021.09.30.462539
Hammouda, Omar: In vivo identification and validation of novel potential predictors for human cardiovascular diseases / Omar T. Hammouda, Meng Yue Wu, Verena Kaul, Jakob Gierten, Thomas Thumberger, Joachim Wittbrodt, December 17, 2021. - 20 S.
In: PLOS ONE, ISSN 1932-6203. 16(2021), 12, Artikel-ID e0261572, Seite 1-20
DOI: 10.1371/journal.pone.0261572
Zilova, Lucie: Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development - in vivo imaging of OV formation / Lucie Zilova, Venera Weinhardt, Tinatini Tavhelidse, Christina Schlagheck, Thomas Thumberger, Joachi… . -
Heidelberg: Universität, 2021-07-06. - 1 Online-Ressource (12 Files)
DOI: 10.11588/data/AOSUS8
Cirksena, Karsten: The C-mannosylome of human induced pluripotent stem cells implies a role for ADAMTS16 C-pannosylation in eye development / Karsten Cirksena, Hermann J. Hutte, Aleksandra Shcherbakova, Thomas Thumberger, Roman Sakson, Stefan… , May 8, 2021. - 14 S.
In: Molecular & cellular proteomics, ISSN 1535-9484. 20(2021), Artikel-ID 100092, Seite 1-14
DOI: 10.1016/j.mcpro.2021.100092
Zilova, Lucie: Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development / Lucie Zilova, Venera Weinhardt, Tinatini Tavhelidse, Christina Schlagheck, Thomas Thumberger, Joachi… , 12 July 2021. - 26 S.
In: eLife, ISSN 2050-084X. 10(2021), Artikel-ID e66998, Seite 1-26
DOI: 10.7554/eLife.66998
Becker, Clara: Igf signaling couples retina growth with body growth by modulating progenitor cell division / Clara Becker, Katharina Lust and Joachim Wittbrodt, 15 April 2021. - 13 S.
In: Development, ISSN 1477-9129. 148(2021), 7, Artikel-ID dev199133, Seite 1-13
DOI: 10.1242/dev.199133
Aghaallaei, Nargessadat: αβ/γδ T cell lineage outcome is regulated by intrathymic cell localization and environmental signals / Narges Aghaallaei, Advaita M. Dick, Erika Tsingos, Daigo Inoue, Eva Hasel, Thomas Thumberger, Atsush… , 14 July 2021. - 13 S.
In: Science advances, ISSN 2375-2548. 7(2021), 29, Artikel-ID eabg3613, Seite 1-13
DOI: 10.1126/sciadv.abg3613
Wagner, Nils: Deep learning-enhanced light-field imaging with continuous validation / Nils Wagner, Fynn Beuttenmueller, Nils Norlin, Jakob Gierten, Juan Carlos Boffi, Joachim Wittbrodt, … , 7 May 2021. - 7 S.
In: Nature methods, ISSN 1548-7105. 18(2021), 5, Seite 557-563
DOI: 10.1038/s41592-021-01136-0
Jakab, Sevinç: A patient-based medaka alg2 mutant as a model for hypo-N-glycosylation / Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Clara Becker, Kaisa Pakari, Lars Beedge… , 09 June 2021. - 16 S.
In: Development, ISSN 1477-9129. 148(2021), 11, Artikel-ID dev.199385, Seite 1-16
DOI: 10.1242/dev.199385
Bosze, Bernadett: Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish / Bernadett Bosze, Yosuke Ono, Benjamin Mattes, Claude Sinner, Victor Gourain, Thomas Thumberger, Sham… , 01 June 2020. - 18 S.
In: Histochemistry and cell biology, ISSN 1432-119X. 154(2020), 5, Seite 463-480
DOI: 10.1007/s00418-020-01887-5
Meyer, Hannah V.: Genetic and functional insights into the fractal structure of the heart / Hannah V. Meyer, Timothy J.W. Dawes, Marta Serrani, Wenjia Bai, Paweł Tokarczuk, Jiashen Cai, Antoni… , 19 August 2020. - 6 S.
In: Nature, ISSN 1476-4687. 584(2020), 7822, Seite 589-594
DOI: 10.1038/s41586-020-2635-8
Jakab, Sevinç: The medaka alg2 mutant is a model for hypo-N-glycosylation-associated retinitis pigmentosa / Sevinç Gücüm, Roman Sakson, Marcus Hoffmann, Valerian Grote, Lars Beedgen, Christian Thiel, Erdmann … , August 24, 2020. - 40 S.
In: bioRxiv beta. (2020) vom: Aug., Artikel-ID 2020.08.20.260430, Seite 1-40
DOI: 10.1101/2020.08.20.260430
Lösel, Philipp: Introducing Biomedisa as an open-source online platform for biomedical image segmentation / Philipp D. Lösel, Thomas van de Kamp, Alejandra Jayme, Alexey Ershov, Tomáš Faragó, Olaf Pichler, Ni… , 04 November 2020. - 14 S.
In: Nature Communications, ISSN 2041-1723. 11(2020), Artikel-ID 5577, Seite 1-14
DOI: 10.1038/s41467-020-19303-w
Gierten, Jakob: Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions / Jakob Gierten, Christian Pylatiuk, Omar T. Hammouda, Christian Schock, Johannes Stegmaier, Joachim W… , 06 February 2020. - 12 S.
In: Scientific reports, ISSN 2045-2322. 10(2020) Artikel-Nummer 2046, 12 Seiten
DOI: 10.1038/s41598-020-58563-w
Vázquez-Marín, Javier: yap1b, a divergent Yap/Taz family member, cooperates with yap1 in survival and morphogenesis via common transcriptional targets / Javier Vázquez-Marín, José Arturo Gutiérrez-Triana, María Almuedo-Castillo, Lorena Buono, José Luis … , 21 June 2019. - 15 S.
In: Development, ISSN 1477-9129. 146(2019), 13
DOI: 10.1242/dev.173286
Gierten, Jakob: Automated high-throughput heart rate measurement in medaka and zebrafish embryos under physiological conditions / Jakob Gierten, Christian Pylatiuk, Omar Hammouda, Christian Schock, Johannes Stegmaier, Joachim Witt… . -
Karlsruhe, [2019]. - 1 Online-Ressource (39 Seiten)
DOI: 10.1101/548594
Dasyani, Manish: Lineage tracing of col10a1 cells identifies distinct progenitor populations for osteoblasts and joint cells in the regenerating fin of medaka (Oryzias latipes) / Manish Dasyani, Wen Hui Tan, Sudha Sundaram, Nurgul Imangali, Lazaro Centanin, Joachim Wittbrodt, Ch… , 17 July 2019. - 15 S.
In: Developmental biology, ISSN 1095-564X. 455(2019), 1, Seite 85-99
DOI: 10.1016/j.ydbio.2019.07.012
Tsingos, Erika: Retinal stem cells modulate proliferative parameters to coordinate post-embryonic morphogenesis in the eye of fish / Erika Tsingos, Burkhard Höckendorf, Thomas Sütterlin, Stephan Kirchmaier, Niels Grabe, Lazaro Centan… , Mar 26, 2019. - 38 S.
In: eLife, ISSN 2050-084X. 8(2019) Artikel-Nummer e42646, 38 Seiten
DOI: 10.7554/eLife.42646
Wagner, Nils: Instantaneous isotropic volumetric imaging of fast biological processes / Nils Wagner, Nils Norlin, Jakob Gierten, Gustavo de Medeiros, Bálint Balázs, Joachim Wittbrodt, Lars… , 29 April 2019. - 4 S.
In: Nature methods, ISSN 1548-7105. 16(2019), 6, Seite 497-200
DOI: 10.1038/s41592-019-0393-z
Hammouda, Omar: Swift large-scale examination of directed genome editing / Omar T. Hammouda, Frank Böttger, Joachim Wittbrodt, Thomas Thumberger, March 5, 2019. - 11 S.
In: PLOS ONE, ISSN 1932-6203. 14(2019), 3, Artikel-ID e0213317, Seite 1-11
DOI: 10.1371/journal.pone.0213317
Lischik, Colin Q.: Enhanced in vivo-imaging in medaka by optimized anaesthesia, fluorescent protein selection and removal of pigmentation / Colin Q. Lischik, Leonie Adelmann, Joachim Wittbrodt, March 7, 2019. - 19 S.
In: PLOS ONE, ISSN 1932-6203. 14(2019,3) Artikel-Nummer e0212956, 19 Seiten
DOI: 10.1371/journal.pone.0212956
Bosze, Bernadett: Pcdh18a-positive tip cells instruct notochord formation in zebrafish / Bernadett Bosze, Benjamin Mattes, Claude Sinner, Kathrin Stricker, Victor Gourain, Thomas Thumberger… , January 31, 2018. - 47 S. : Illustrationen
In: bioRxiv beta. (2018) vom: Jan., Artikel-ID 257717, Seite 1-47
DOI: 10.1101/257717
Inoue, Daigo: Loss and rebirth of the animal microtubule organizing center : how maternal expression of centrosomal proteins cooperates with the sperm centriole in zygotic centrosome reformation / Daigo Inoue, Joachim Wittbrodt, Oliver J. Gruss, 09 March 2018. - 9 S.
In: Bioessays, ISSN 1521-1878. 40(2018,4) Artikel-Nummer p1700135, 9 Seiten
DOI: 10.1002/bies.201700135
Kikuchi, Mariko: Novel components of germline sex determination acting downstream of foxl3 in medaka / Mariko Kikuchi, Toshiya Nishimura, Daisuke Saito, Shuji Shigenobu, Ritsuko Takada, José Arturo Gutie… , 2019. - 10 S.
In: Developmental biology, ISSN 1095-564X. 445(2019), 1, Seite 80-89
DOI: 10.1016/j.ydbio.2018.10.019
Lust, Katharina: Activating the regenerative potential of Müller glia cells in a regeneration-deficient retina / Katharina Lust, Joachim Wittbrodt, Jan 29, 2018
In: eLife, ISSN 2050-084X. 7(2018) Artikel-Nummer e32319
DOI: 10.7554/eLife.32319
Weinhardt, Venera: Quantitative morphometric analysis of adult teleost fish by X-ray computed tomography / Venera Weinhardt, Roman Shkarin, Tobias Wernet, Joachim Wittbrodt, Tilo Baumbach & Felix Loosli, 08 November 2018. - 12 S.
In: Scientific reports, ISSN 2045-2322. 8(2018) Artikel-Nummer 16531, 12 Seiten
DOI: 10.1038/s41598-018-34848-z
Pérez Saturnino, Alicia: Notch signalling patterns retinal composition by regulating atoh7 during post-embryonic growth / Alicia Pérez Saturnino, Katharina Lust and Joachim Wittbrodt, 9 November 2018
In: Development, ISSN 1477-9129. 145(2018,21) Artikel-Nummer dev169698, 11 Seiten
DOI: 10.1242/dev.169698
Roussigné, Myriam: Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells / Myriam Roussigné, Lu Wei, Erika Tsingos, Franz Kuchling, Mansour Alkobtawi, Matina Tsalavouta, Joach… , October 3, 2018. - 10 S.
In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 1091-6490. 115(2018), 42, Seite E9812-E9821
DOI: 10.1073/pnas.1812016115
Gutiérrez Triana, José Arturo: Efficient single-copy HDR by 5' modified long dsDNA donors / Jose Arturo Gutierrez-Triana, Tinatini Tavhelidse, Thomas Thumberger, Isabelle Thomas, Beate Wittbro… , Aug 29, 2018
In: eLife, ISSN 2050-084X. 7(2018) Artikel-Nummer e39468, 41 Seiten
DOI: 10.7554/eLife.39468
Wittbrodt, Joachim: Goodbye USA - welcome Germany : Forschung in Deutschland / Joachim Wittbrodt. -
Heidelberg: Universitätsbibliothek Heidelberg, 24 Mai 2018. - 1 Online-Ressource
(Campus-Report bei Uni-Radio Baden ; 9 Mai 2018)
Wittbrodt, Joachim: Berechtigung der Grundlagenforschung / Joachim Wittbrodt. -
Heidelberg: Universitätsbibliothek Heidelberg, 27 Apr. 2018. - 1 Online-Ressource
(Campus-Report bei Uni-Radio Baden ; 25 April 2018)
DOI: 10.11588/heidok.00024418
Inoue, Daigo: Expression of the novel maternal centrosome assembly factor Wdr8 is required for vertebrate embryonic mitoses / Daigo Inoue, Manuel Stemmer, Thomas Thumberger, Thomas Ruppert, Felix Bärenz, Joachim Wittbrodt, and… , 18 Jan 2017. - 12 S.
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Kuri Rodríguez, Paola Sofía: Dynamics of in vivo ASC speck formation / Paola Kuri, Nicole L. Schieber, Thomas Thumberger, Joachim Wittbrodt, Yannick Schwab, and Maria Lept… , 12 July 2017. - 19 S.
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Shi, Dongbo: Bifacial stem cell niches in fish and plants / Dongbo Shi, Tinatini Tavhelidse, Thomas Thumberger, Joachim Wittbrodt and Thomas Greb, 24 February 2017. - 6 S.
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Pereiro, Luisa: Gastrulation in an annual killifish : molecular and cellular events during germ layer formation in Austrolebias / Luisa Pereiro, Felix Loosli, Juan Fernández, Steffen Härtel, Joachim Wittbrodt and Miguel L. Concha. - 15 S.
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Nicolás-Pérez, María: Analysis of cellular behavior and cytoskeletal dynamics reveal a constriction mechanism driving optic cup morphogenesis / María Nicolás-Pérez, Franz Kuchling, Joaquín Letelier, Rocío Polvillo, Jochen Wittbrodt, Juan R Mart… , 31 October 2016. - 24 S.
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Gutiérrez Triana, José Arturo: iDamIDseq and iDEAR : an improved method and computational pipeline to profile chromatin-binding proteins / Jose Arturo Gutierrez-Triana, Juan L. Mateo, David Ibberson, Soojin Ryu and Joachim Wittbrodt, 6 September 2016. - 7 S.
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Lust, Katharina: De novo neurogenesis by targeted expression of atoh7 to Müller glia cells / Katharina Lust, Rebecca Sinn, Alicia Pérez Saturnino, Lázaro Centanin and Joachim Wittbrodt, 1 June 2016. - 10 S.
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"Implementation of X-ray hierarchical imaging for life sciences: application to functional genomics and regenerative biology" : final report / Institution: Dept. of Molecular Developmental Biology and Physiology, Centre for Organismal Studies,… . -
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Kirchmaier, Stephan: Generation of DNA constructs using the golden GATEway cloning method / Stephan Kirchmaier, Katharina Lust, Jochen Wittbrodt. - 12 S.
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Aghaallaei, Nargessadat: Identification, visualization and clonal analysis of intestinal stem cells in fish / Narges Aghaallaei, Franziska Gruhl, Colin Q. Schaefer, Tobias Wernet, Venera Weinhardt, Lázaro Centa… , 2016. - 11 S.
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Alonso-Barba, Juan I.: MEPD : medaka expression pattern database, genes and more / Juan I. Alonso-Barba, Raza-Ur Rahman, Joachim Wittbrodt and Juan L. Mateo. - 3 S.
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Mateo, Juan L.: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal / Juan L. Mateo, Debbie L. C. van den Berg, Maximilian Haeussler, Daniela Drechsel, Zachary B. Gaber, … . - 16 S.
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Kirchmaier, Stephan: The genomic and genetic toolbox of the teleost medaka (Oryzias latipes) / Stephan Kirchmaier, Kiyoshi Naruse, Joachim Wittbrodt, and Felix Loosli. - 14 S.
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Reinhardt, Robert: Sox2, Tlx, Gli3, and Her9 converge on Rx2 to define retinal stem cells in vivo / Robert Reinhardt, Lázaro Centanin, Tinatini Tavhelidse, Daigo Inoue, Beate Wittbrodt, Jean-Paul Conc… , April 23, 2015. - 17 S.
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Auer, Thomas: Deletion of a kinesin I motor unmasks a mechanism of homeostatic branching control by neurotrophin-3 / Thomas O. Auer, Tong Xiao, Valerie Bercier, Christoph Gebhardt, Karine Duroure, Jean-Paul Concordet,… , June 15, 2015. - 26 S.
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Bajoghli, Baubak: Noninvasive in toto imaging of the thymus reveals heterogeneous migratory behavior of developing T cells / Baubak Bajoghli, Paola Kuri, Daigo Inoue, Narges Aghaallaei, Marleen Hanelt, Thomas Thumberger, Matt… . - 10 S.
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Beccari, Leonardo: A trans-regulatory code for the forebrain expression of Six3.2 in the medaka fish / Leonardo Beccari, Raquel Marco-Ferreres, Noemi Tabanera, Anna Manfredi, Marcel Souren, Beate Wittbro… . - 16 S.
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Lust, Katharina: Hold your breath! / Katharina Lust and Joachim Wittbrodt
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Stemmer, Manuel: Cavefish eye loss in response to an early block in retinal differentiation progression / Manuel Stemmer, Laura-Nadine Schuhmacher, Nicholas S. Foulkes, Cristiano Bertolucci, and Joachim Wit… . - 10 S.
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Dolle, Dirk-Dominik: Handling permutation in sequence comparison: genome-wide enhancer prediction in vertebrates by a novel non-linear alignment scoring principle / Dirk Dolle, Juan L. Mateo, Michael P. Eichenlaub, Rebecca Sinn, Robert Reinhardt, Burkhard Höckend… , October 27, 2015. - 25 S.
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Stemmer, Manuel: CCTop : an intuitive, flexible and reliable CRISPR/Cas9 target prediction tool / Manuel Stemmer ; Thomas Thumberger ; Maria del Sol Keyer ; Joachim Wittbrodt ; Juan L. Mateo
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Heermann, Stephan: Eye morphogenesis driven by epithelial flow into the optic cup facilitated by modulation of bone morphogenetic protein / Stephan Heermann, Lucas Schütz, Steffen Lemke, Kerstin Krieglstein, Joachim Wittbrodt
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Centanin, Lázaro: Retinal neurogenesis / Lázaro Centanin and Joachim Wittbrodt. - 4 S.
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Spivakov, Mikhail: Genomic and phenotypic characterization of a wild medaka population : towards the establishment of an isogenic population genetic resource in fish / Mikhail Spivakov, Thomas O. Auer, Ravindra Peravali, Ian Dunham, Dirk Dolle, Asao Fujiyama, Atsushi … , 2014. - 13 S.
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Mazaheri, Fargol: Distinct roles for BAI1 and TIM-4 in the engulfment of dying neurons by microglia / Fargol Mazaheri, Oksana Breus, Sevi Durdu, Petra Haas, Jochen Wittbrodt, Darren Gilmour & Francesca …
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Tena, Juan J.: Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period / Juan J. Tena, Cristina González-Aguilera, Ana Fernández-Miñán, Javier Vázquez-Marín, Helena Parra-Ac… . - 11 S.
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Centanin, Lázaro: Exclusive multipotency and preferential asymmetric divisions in post-embryonic neural stem cells of the fish retina / Lázaro Centanin, Janina-J. Ander, Burkhard Hoeckendorf, Katharina Lust, Tanja Kellner, Isabel Kraeme… . - 11 S.
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Volbehr, Ute: MoD special issue on molecular and cellular bases of neural development / Ute Volbehr, Joachim Wittbrodt. - 1 S.
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Herder, Cathrin: ArhGEF18 regulates RhoA-Rock2 signaling to maintain neuro-epithelial apico-basal polarity and proliferation / Cathrin Herder, Jakub M. Swiercz, Claudia Müller, Ravindra Peravali, Rebecca Quiring, Stefan Offerma… . - 11 S.
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Kirchmaier, Stephan: Efficient site-specific transgenesis and enhancer activity tests in medaka using PhiC31 integrase / Stephan Kirchmaier, Burkhard Höckendorf, Eva Katharina Möller, Dorothee Bornhorst, Francois Spitz an… . - 9 S.
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Loosli, Claudia: The medaka mutation tintachina sheds light on the evolution of V-ATPase B subunits in vertebrates / Claudia Müller, Ignacio Maeso, Joachim Wittbrodt & Juan R. Martínez-Morales
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Schaafhausen, Maximilian K.: Tumor angiogenesis is caused by single melanoma cells in a manner dependent on reactive oxygen species and NF-kappa B / Maximilian K. Schaafhausen, Wan-Jen Yang, Lazaro Centanin, Joachim Wittbrodt, Anja Bosserhoff, Andre… , 2013. - 11 S.
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Bärenz, Felix: The centriolar satellite protein SSX2IP promotes centrosome maturation / Felix Bärenz, Daigo Inoue, Hideki Yokoyama, Justus Tegha-Dunghu, Stephanie Freiss, Stefanie Draeger,… , 2013. - 15 S.
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Wittbrodt, Joachim: Centre for Organismal Studies (COS) Heidelberg / Joachim Wittbrodt, Rüdiger Hell, Jan Lohmann, and Thomas W. Holstein. - 2 S.
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Ramialison, Mirana: Cis-regulatory properties of medaka synexpression groups / Mirana Ramialison, Robert Reinhardt, Thorsten Henrich, Beate Wittbrodt, Tanja Kellner, Camille M. Lo… . - 12 S.
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Harden, Maegan V.: Close association of olfactory placode precursors and cranial neural crest cells does not predestine cell mixing / Maegan V. Harden, Luisa Pereiro, Mirana Ramialison, Jochen Wittbrodt, Megana K. Prasad, Andrew S. Mc… . - 12 S.
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Schulz, Sarah: Ubiquitin‐specific protease‐like 1 (USPL1) is a SUMO isopeptidase with essential, non‐catalytic functions / Sarah Schulz, Georgia Chachami, Lukasz Kozaczkiewicz, Ulrike Winter, Nicolas Stankovic‐Valentin, Pet… , 10 August 2012. - 9 S.
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Alten, Leonie: A novel mammal-specific three partite enhancer element regulates node and notochord-specific noto expression / Leonie Alten, Karin Schuster-Gossler, Michael P. Eichenlaub, Beate Wittbrodt, Joachim Wittbrodt, Ach…
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Höckendorf, Burkhard: Quantitative analysis of embryogenesis : a perspective for light sheet microscopy / Burkhard Höckendorf, Thomas Thumberger, and Joachim Wittbrodt. - 10 S.
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Kausler, Bernhard: A discrete chain graph model for 3d+t cell tracking with high misdetection robustness / Bernhard X. Kausler, Martin Schiegg, Bjoern Andres, Martin Lindner, Ullrich Koethe, Heike Leitte, Jo… , 2012. - 14 S.
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Fangerau, Jens: Similarity analysis of cell movements in video microscopy / J. Fangerau, B. Höckendorf, J. Wittbrodt, H. Leitte, 2012. - 8 S.
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Maurya, Ashish K.: Integration of hedgehog and BMP signalling by the engrailed2a gene in the zebrafish myotome / Ashish K. Maurya, Haihan Tan, Marcel Souren, Xingang Wang, Joachim Wittbrodt and Philip W. Ingham. - 11 S.
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Keller, Philipp J.: Digital scanned laser light-sheet fluorescence microscopy (DSLM) of zebrafish and drosophila embryonic development / Philipp J. Keller, Annette D. Schmidt, Jochen Wittbrodt, Ernst H.K. Stelzer, 2011. - ? S.
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Inoue, Daigo: One for all : a highly efficient and versatile method for fluorescent immunostaining in fish embryos / Daigo Inoue, Joachim Wittbrodt, May 13, 2011. - 7 S.
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Wittbrodt, Joachim: Centre for Organismal Studies (COS) Heidelberg / Joachim Wittbrodt, Rüdiger Hell, Jan Lohmann und Thomas W. Holstein. - 2 S.
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Centanin, Lázaro: Fate restriction and multipotency in retinal stem cells / Lázaro Centanin, Burkhard Hoeckendorf, and Joachim Wittbrodt, December 1, 2011. - 10 S.
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Haudry, Yannick: Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation / Yannick Haudry, Mirana Ramialison, Benedict Paten, Joachim Wittbrodt, Laurence Ettwiller. - 12 S.
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Ettwiller, Laurence: Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences / Laurence Ettwiller, Aidan Budd, François Spitz, Joachim Wittbrodt
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Ramialison, Mirana: Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools / Mirana Ramialison, Baubak Bajoghli, Narges Aghaallaei, Laurence Ettwiller, Sylvain Gaudan, Beate Wit…
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Steinmetz, Patrick R. H.: Polychaete trunk neuroectoderm converges and extends by mediolateral cell intercalation / Patrick R.H. Steinmetz, Fabiola Zelada-Gonzáles, Carola Burgtorf, Joachim Wittbrodt, and Detlev Aren… . - 6 S.
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Fritzsch, Bernd: Ancestry of photic and mechanic sensation? / Bernd Fritzsch, Joram Piatigorsky, Kristin Tessmar-Raible, Gáspár Jékely, Guy Keren, Florian Raible,… . - 2 S.
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In: Genome biology, ISSN 1474-760X. 6(2005) Artikel-Nummer R104, 14 Seiten
DOI: 10.1186/gb-2005-6-12-r104
Arendt, Detlev: Ciliary photoreceptors with a vertebrate-type opsin in an invertebrate brain / Detlev Arendt, Kristin Tessmar-Raible, Heidi Snyman, Adriaan W. Dorresteijn, Joachim Wittbrodt. - 3 S.
In: Science, ISSN 1095-9203. 306(2004), 5697, S. 869-871
DOI: 10.1126/science.1099955
Poggi, Lucia: The homeobox gene Xbh1 cooperates with proneural genes to specify ganglion cell fate within the Xenopus neural retina / Lucia Poggi, Teresa Vottari, Giuseppina Barsacchi, Joachim Wittbrodt, Robert Vignali. - 11 S.
In: Development, ISSN 1477-9129. 131(2004), 10, S. 2305-2315
DOI: 10.1242/dev.01099
Wittbrodt, Joachim: Medaka : a model organism from the far east / Joachim Wittbrodt, Akihiro Shima, Manfred Schartl. - 12 S.
In: Nature reviews, ISSN 1471-0064. 3(2002), 1, S. 53-64
DOI: 10.1038/nrg704
Arendt, Detlev: Reconstructing the eyes of Urbilateria / Detlev Arendt, Joachim Wittbrodt. - 19 S.
In: Philosophical transactions, ISSN 1471-2970. 356(2001), 1414, S. 1545-1563
DOI: 10.1098/rstb.2001.0971
Arendt, Detlev: Evolution of the bilaterian larval foregut / Detlev Arendt, Ulrich Technau, Joachim Wittbrodt. - 5 S.
In: Nature, ISSN 1476-4687. 409(2001), 6816, S. 81-85
DOI: 10.1038/35051075
Wittbrodt, Joachim: Novel putative receptor tyrosine kinase encoded by the melanoma-inducing Tu locus in Xiphophorus / Joachim Wittbrodt, Dieter Adam, Barbara Malitschek, Winfried Mäueler, Friedrich Raulf, Agnes Telling… . - 7 S.
In: Nature, ISSN 1476-4687. 341(1989), 6241, S. 415-421
DOI: 10.1038/341415a0

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