heiBIB: Sáez Rodríguez, Julio

Sáez Rodríguez, Julio Prof. Dr.Universität HeidelbergHeidelberg

Publikationsliste einschränken

Publikationsjahre

Publikationstypen

Liste

Sprache

englisch (132)
deutsch (1)

Co-Autoren (Uni Heidelberg)

mehr ...

Co-Autoren (extern)

mehr ...

Publikationen in heiBIB

Farr, Elias: MetalinksDB : a flexible and contextualizable resource of metabolite-protein interactions / Elias Farr, Daniel Dimitrov, Christina Schmidt, Denes Turei, Sebastian Lobentanzer, Aurelien Dugourd… , July 2024. - 12 S. : Illustrationen
In: Briefings in bioinformatics, ISSN 1477-4054. 25(2024), 4 vom: Juli, Seite bbae347$p1-12
DOI: 10.1093/bib/bbae347
Lerma Martin, Celia: Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions / Celia Lerma-Martin, Pau Badia-i-Mompel, Ricardo O. Ramirez Flores, Patricia Sekol, Philipp S.L. Schä… , December 2024. - 10 S.
In: Nature neuroscience, ISSN 1546-1726. 27(2024), 12 vom: Dez., Seite 2354-2365
DOI: 10.1038/s41593-024-01796-z
Lanzer, Jan David: Single-cell transcriptomics reveal distinctive patterns of fibroblast activation in heart failure with preserved ejection fraction / Jan D. Lanzer, Laura M. Wienecke, Ricardo O. Ramirez Flores, Maura M. Zylla, Celina Kley, Niklas Har… , 23 September 2024. - 28 S.
In: Basic research in cardiology, ISSN 1435-1803. 119(2024), 6, Seite 1001-1028
DOI: 10.1007/s00395-024-01074-w
White, Brian S.: Community assessment of methods to deconvolve cellular composition from bulk gene expression / Brian S. White, Aurélien de Reyniès, Aaron M. Newman, Joshua J. Waterfall, Andrew Lamb, Florent Peti… , 27 August 2024. - 22 S. : Illustrationen
In: Nature Communications, ISSN 2041-1723. 15(2024), Artikel-ID 7362, Seite 1-22
DOI: 10.1038/s41467-024-50618-0
Lussana, Alessandro: PhosX : data-driven kinase activity inference from phosphoproteomics experiments / Alessandro Lussana, Sophia Müller-Dott, Julio Saez-Rodriguez, Evangelia Petsalaki, December 2024. - 5 S. : Illustrationen
In: Bioinformatics, ISSN 1367-4811. 40(2024), 12 vom: Dez., Artikel-ID btae697, Seite 1-5
DOI: 10.1093/bioinformatics/btae697
Billing, Anja M.: Metabolic communication by SGLT2 inhibition / Anja M. Billing, PhD, Young Chul Kim, PhD, Søren Gullaksen, MD, Benedikt Schrage, MD, PhD, Janice Ra… , 2024. - 25 S.
In: Circulation, ISSN 1524-4539. 149(2024), 11 vom: März, Seite 860-884
DOI: 10.1161/CIRCULATIONAHA.123.065517
Masarapu, Yuvarani: Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice / Yuvarani Masarapu, Egle Cekanaviciute, Zaneta Andrusivova, Jakub O. Westholm, Åsa Björklund, Robin F… , 11 June 2024. - 14 S. : Illustrationen
In: Nature Communications, ISSN 2041-1723. 15(2024), Artikel-ID 4778, Seite 1-14
DOI: 10.1038/s41467-024-48916-8
Rahimi, Arezou: DOT : a flexible multi-objective optimization framework for transferring features across single-cell and spatial omics / Arezou Rahimi, Luis A. Vale-Silva, Maria Fälth Savitski, Jovan Tanevski & Julio Saez-Rodriguez, 11 June 2024. - 15 S. : Illustrationen
In: Nature Communications, ISSN 2041-1723. 15(2024), Artikel-ID 4994, Seite 1-15
DOI: 10.1038/s41467-024-48868-z
Gegner, Hagen M.: A single-sample workflow for joint metabolomic and proteomic analysis of clinical specimens / Hagen M. Gegner, Thomas Naake, Karim Aljakouch, Aurelien Dugourd, Georg Kliewer, Torsten Müller, Dus… , 05 July 2024. - 17 S. : Illustrationen
In: Clinical proteomics, ISSN 1559-0275. 21(2024), Artikel-ID 49, Seite 1-17
DOI: 10.1186/s12014-024-09501-9
Paton, Victor: Assessing the impact of transcriptomics data analysis pipelines on downstream functional enrichment results / Victor Paton, Ricardo Omar Ramirez Flores, Attila Gabor, Pau Badia-i-Mompel, Jovan Tanevski, Martin … , 12 August 2024. - 12 S. : Illustrationen
In: Nucleic acids research, ISSN 1362-4962. 52(2024), 14 vom: Aug., Seite 8100-8111
DOI: 10.1093/nar/gkae552
Maier, Andreas: Drugst : One - a plug-and-play solution for online systems medicine and network-based drug repurposing / Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D. Bader, Sylvie Baier, David … , 5 July 2024. - 8 S. : Illustrationen
In: Nucleic acids research, ISSN 1362-4962. 52(2024,W1), Seite W481-W488
DOI: 10.1093/nar/gkae388
Laury, Anna: Opening the black box : spatial transcriptomics and the relevance of artificial intelligence-detected prognostic regions in high-grade serous carcinoma / Anna Ray Laury, Shuyu Zheng, Niina Aho, Robin Fallegger, Satu Hänninen, Julio Saez-Rodriguez, Jovan … , July 2024. - 12 S. : Illustrationen
In: Modern pathology, ISSN 1530-0285. 37(2024), 7 vom: Juli, Artikel-ID 100508, Seite 1-12
DOI: 10.1016/j.modpat.2024.100508
Unger Avila, Paula: Gene regulatory networks in disease and ageing / Paula Unger Avila, Tsimafei Padvitski, Ana Carolina Leote, He Chen, Julio Saez-Rodriguez, Martin Kan… , 12 June 2024. - 15 S.
In: Nature reviews, ISSN 1759-507X. 20(2024), 9, Seite 616-633
DOI: 10.1038/s41581-024-00849-7
Lobentanzer, Sebastian: Molecular causality in the advent of foundation models / Sebastian Lobentanzer, Pablo Rodriguez-Mier, Stefan Bauer & Julio Saez-Rodriguez, August 2024. - 11 S. : Illustrationen
In: Molecular systems biology, ISSN 1744-4292. 20(2024), 8 vom: Aug., Seite 848-858
DOI: 10.1038/s44320-024-00041-w
Reinke, Annika: Understanding metric-related pitfalls in image analysis validation / Annika Reinke, Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. E… , 12 February 2024. - 22 S.
In: Nature methods, ISSN 1548-7105. 21(2024), 2, Seite 182-194
DOI: 10.1038/s41592-023-02150-0
Dimitrov, Daniel: LIANA+ provides an all-in-one framework for cell-cell communication inference / Daniel Dimitrov, Philipp Sven Lars Schäfer, Elias Farr, Pablo Rodriguez-Mier, Sebastian Lobentanzer,… , 02 September 2024. - 30 S.
In: Nature cell biology, ISSN 1476-4679. 26(2024), 9, Seite 1613-1622
DOI: 10.1038/s41556-024-01469-w
Kennedy, Keith Endres: Multiscale networks in multiple sclerosis / Keith E. Kennedy, Nicole Kerlero de Rosbo, Antonio Uccelli, Maria Cellerino, Federico Ivaldi, Paola … , February 8, 2024. - 35 S. : Illustrationen
In: PLoS Computational Biology, ISSN 1553-7358. 20(2024), 2, Artikel-ID e1010980, Seite 1-35
DOI: 10.1371/journal.pcbi.1010980
Fuchs, Stijn: Collaborative effect of Csnk1a1 haploinsufficiency and mutant p53 in Myc induction can promote leukemic transformation / Stijn N.R. Fuchs, Ursula S.A. Stalmann, Inge A.M. Snoeren, Eric Bindels, Stephani Schmitz, Bella Ban… , February 13 2024. - 14 S. : Illustrationen
In: Blood advances, ISSN 2473-9537. 8(2024), 3, Seite 766-779
DOI: 10.1182/bloodadvances.2022008926
Wijaya, Lukas Surya: A network-based transcriptomic landscape of HepG2 cells uncovering causal gene-cytotoxicity interactions underlying drug-induced liver injury / Lukas S. Wijaya, Attila Gabor, Iris E. Pot, Luca van de Have, Julio Saez-Rodriguez, James L. Stevens… , March 2024. - 17 S. : Illustrationen
In: Toxicological sciences, ISSN 1096-0929. 198(2024), 1 vom: März, Seite 14-30
DOI: 10.1093/toxsci/kfad121
Valdeolivas, Alberto: Profiling the heterogeneity of colorectal cancer consensus molecular subtypes using spatial transcriptomics / Alberto Valdeolivas, Bettina Amberg, Nicolas Giroud, Marion Richardson, Eric J. C. Gálvez, Solveig B… , 10 January 2024. - 16 S. : Illustrationen
In: npj precision oncology, ISSN 2397-768X. 8(2024), 1, Artikel-ID 10, Seite 1-16
DOI: 10.1038/s41698-023-00488-4
Maier-Hein, Lena: Metrics reloaded : recommendations for image analysis validation / Lena Maier-Hein, Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodo… , 12 February 2024. - 18 S.
In: Nature methods, ISSN 1548-7105. 21(2024), 2, Seite 195-212
DOI: 10.1038/s41592-023-02151-z
Ghasemi, David R.: Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage / David R. Ghasemi, Konstantin Okonechnikov, Anne Rademacher, Stephan Tirier, Kendra K. Maass, Hanna S… , 08 January 2024. - 20 S.
In: Nature Communications, ISSN 2041-1723. 15(2024), Artikel-ID 269, Seite 1-20
DOI: 10.1038/s41467-023-44117-x
Sáez Rodríguez, Julio: LAMarCK - Longitudinal multiomics characterization of disease using prior knowledge : Schlussbericht : LAMarCK - Verbundprojekt: Teilprojekt: AG Saez-Rodriguez : Laufzeit: 1. April 2019-31. März 2023 / Teilprojektleiter: Prof. Julio Saez-Rodriguez, Director, Institute for Computational Biomedicine, He… . -
Heidelberg: Heidelberg University, Faculty of Medicine, Institut für Computational Biomedicine, 25.10.2023. - 1 Online-Ressource (12 Seiten, 157,52 KB) : Illustrationen, Diagramme
DOI: 10.2314/KXP:1920112715
Triantafyllidis, Charalampos P.: A machine learning and directed network optimization approach to uncover TP53 regulatory patterns / Charalampos P. Triantafyllidis, Alessandro Barberis, Fiona Hartley, Ana Miar Cuervo, Enio Gjerga, Ph… , 15 December 2023. - 19 S. : Illustrationen, Diagramme
In: iScience, ISSN 2589-0042. 26(2023), 12, Artikel-ID 108291, Seite 1-19
DOI: 10.1016/j.isci.2023.108291
Sun, Rui: Proteomic dynamics of breast cancer cell lines identifies potential therapeutic protein targets / Rui Sun, Weigang Ge, Yi Zhu, Azin Sayad, Augustin Luna, Mengge Lyu, Shuang Liang, Luis Tobalina, Vin… , 19 June 2023. - 15 S.
In: Molecular & cellular proteomics, ISSN 1535-9484. 22(2023), 8, Artikel-ID 100602, Seite 1-15
DOI: 10.1016/j.mcpro.2023.100602
Niarakis, Anna: Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches / Anna Niarakis, Marek Ostaszewski, Alexander Mazein, Inna Kuperstein, Martina Kutmon, Marc E. Gillesp… , 13 February 2024. - 24 S. : Illustrationen, Diagramme
In: Frontiers in immunology, ISSN 1664-3224. 14(2023), Artikel-ID 1282859, Seite 1-24
DOI: 10.3389/fimmu.2023.1282859
Engblom, Camilla: Spatial transcriptomics of B cell and T cell receptors reveals lymphocyte clonal dynamics / Camilla Engblom, Kim Thrane, Qirong Lin, Alma Andersson, Hosein Toosi, Xinsong Chen, Embla Steiner, … , 8 Dec 2023. - 17 S. : Illustrationen
In: Science, ISSN 1095-9203. 382(2023), 6675 vom: Dez., Artikel-ID eadf8486, Seite 1-17
DOI: 10.1126/science.adf8486
Ramirez Flores, Ricardo O.: Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease / Ricardo Omar Ramirez Flores, Jan David Lanzer, Daniel Dimitrov, Britta Velten, Julio Saez-Rodriguez, 22 November 2023. - 27 S. : Illustrationen
In: eLife, ISSN 2050-084X. 12(2023), Artikel-ID e93161, Seite 1-27
DOI: 10.7554/eLife.93161
Badia-i-Mompel, Pau: Gene regulatory network inference in the era of single-cell multi-omics / Pau Badia-i-Mompel, Lorna Wessels, Sophia Müller-Dott, Rémi Trimbour, Ricardo O. Ramirez Flores, Ric… , November 2023. - 16 S. : Illustrationen
In: Nature reviews, ISSN 1471-0064. 24(2023), 11 vom: Nov., Seite 739-754
DOI: 10.1038/s41576-023-00618-5
Alexandrov, Theodore: Enablers and challenges of spatial omics, a melting pot of technologies / Theodore Alexandrov, Julio Saez‐Rodriguez & Sinem K Saka, Nov 2023. - 16 S. : Illustrationen
In: Molecular systems biology, ISSN 1744-4292. 19(2023), 11 vom: Nov., Artikel-ID e10571, Seite 1-16
DOI: 10.15252/msb.202110571
Müller-Dott, Sophia: Expanding the coverage of regulons from high-confidence prior knowledge for accurate estimation of transcription factor activities / Sophia Müller-Dott, Eirini Tsirvouli, Miguel Vazquez, Ricardo O. Ramirez Flores, Pau Badia-i-Mompel,… , 10 November 2023. - 16 S. : Illustrationen
In: Nucleic acids research, ISSN 1362-4962. 51(2023), 20, Seite 10934-10949
DOI: 10.1093/nar/gkad841
Wolf, Stephanie: Hepatocytes reprogram liver macrophages involving control of TGF-β activation, influencing liver regeneration and injury / Stephanie D. Wolf, Christian Ehlting, Sophia Müller-Dott, Gereon Poschmann, Patrick Petzsch, Tobias … , August 2023. - 17 S. : Illustrationen
In: Hepatology communications, ISSN 2471-254X. 7(2023), 8 vom: Aug., Artikel-ID e0208, Seite 1-17
DOI: 10.1097/HC9.0000000000000208
Lanzer, Jan David: A network medicine approach to study comorbidities in heart failure with preserved ejection fraction / Jan D. Lanzer, Alberto Valdeolivas, Mark Pepin, Hauke Hund, Johannes Backs, Norbert Frey, Hans-Chris… , 2023. - 21 S. : Illustrationen
In: BMC medicine, ISSN 1741-7015. 21(2023), Artikel-ID 267, Seite 1-21
DOI: 10.1186/s12916-023-02922-7
Salovska, Barbora: Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities / Barbora Salovska, Erli Gao, Sophia Müller-Dott, Wenxue Li, Carlos Chacon Cordon, Shisheng Wang, Aure… , 13 February 2023. - 25 S.
In: Clinical and translational medicine, ISSN 2001-1326. 13(2023), 2 vom: Feb., Artikel-ID e1179, Seite 1-25
DOI: 10.1002/ctm2.1179
Sciacovelli, Marco: Dynamic partitioning of branched-chain amino acids-derived nitrogen supports renal cancer progression / Marco Sciacovelli, Aurelien Dugourd, Lorea Valcarcel Jimenez, Ming Yang, Efterpi Nikitopoulou, Ana S… , 20 December 2022. - 20 S.
In: Nature Communications, ISSN 2041-1723. 13(2022) vom: Dez., Artikel-ID 7830, Seite 1-20
DOI: 10.1038/s41467-022-35036-4
Frede, Annika: B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing / Annika Frede, Paulo Czarnewski, Gustavo Monasterio, Kumar P. Tripathi, David A. Bejarano, Ricardo O.… , 13 December 2022. - 28 S.
In: Immunity, ISSN 1097-4180. 55(2022), 12, Seite 2336-2351, e1-e12
DOI: 10.1016/j.immuni.2022.11.002
Schneider, Kai Markus: Imbalanced gut microbiota fuels hepatocellular carcinoma development by shaping the hepatic inflammatory microenvironment / Kai Markus Schneider, Antje Mohs, Wenfang Gui, Eric J. C. Galvez, Lena Susanna Candels, Lisa Hoenick… , 08 July 2022. - 19 S.
In: Nature Communications, ISSN 2041-1723. 13(2022) vom: Juli, Artikel-ID 3964, Seite 1-19
DOI: 10.1038/s41467-022-31312-5
Schreibing, Felix: Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling / Felix Schreibing, Monica T. Hannani, Hyojin Kim, James S. Nagai, Fabio Ticconi, Eleanor Fewings, Tor… , 16 December 2022. - 23 S.
In: Frontiers in immunology, ISSN 1664-3224. 13(2022), Artikel-ID 1066176, Seite 1-23
DOI: 10.3389/fimmu.2022.1066176
Emdal, Kristina B.: Phosphoproteomics of primary AML patient samples reveals rationale for AKT combination therapy and p53 context to overcome selinexor resistance / Kristina B. Emdal, Nicolàs Palacio-Escat, Caroline Wigerup, Akihiro Eguchi, Helén Nilsson, Dorte B. … , August 9, 2022. - 24 S.
In: Cell reports, ISSN 2211-1247. 40(2022), 6 vom: 9. Aug., Artikel-ID 111177, Seite 1-18, e1-e6
DOI: 10.1016/j.celrep.2022.111177
Gonzalez, Patricia: Parallel ant colony optimization for the training of cell signaling networks / Patricia González, Roberto Prado-Rodriguez, Attila Gábor, Julio Saez-Rodriguez, Julio R. Banga, Ramó… , 20 July 2022. - 16 S. : Illustrationen
In: Expert systems with applications. 208(2022) vom: Dez., Artikel-ID 118199, Seite 1-16
DOI: 10.1016/j.eswa.2022.118199
Trobisch, Tim: Cross-regional homeostatic and reactive glial signatures in multiple sclerosis / Tim Trobisch, Amel Zulji, Nikolas A. Stevens, Sophia Schwarz, Sven Wischnewski, Mikail Öztürk, Javie… , 16 September 2022. - 17 S.
In: Acta neuropathologica, ISSN 1432-0533. 144(2022), 5, Seite 987-1003
DOI: 10.1007/s00401-022-02497-2
Gegner, Hagen M.: Pre-analytical processing of plasma and serum samples for combined proteome and metabolome analysis / Hagen M. Gegner, Thomas Naake, Aurélien Dugourd, Torsten Müller, Felix Czernilofsky, Georg Kliewer, … , 20 December 2022. - 13 S.
In: Frontiers in molecular biosciences, ISSN 2296-889X. 9(2022), Artikel-ID 961448, Seite 1-13
DOI: 10.3389/fmolb.2022.961448
Douglass, Eugene F.: A community challenge for a pancancer drug mechanism of action inference from perturbational profile data / Eugene F. Douglass, Robert J. Allaway, Bence Szalai, Wenyu Wang, Tingzhong Tian, Adrià Fernández-Tor… , January 18, 2022. - 20 S.
In: Cell reports, ISSN 2666-3791. 3(2022), 1, Artikel-ID 100492, Seite 1-13, e1-e7
DOI: 10.1016/j.xcrm.2021.100492
Kuppe, Christoph: Experimental and computational technologies to dissect the kidney at the single-cell level / Christoph Kuppe, Javier Perales-Paton, Julio Saez-Rodriguez and Rafael Kramann, April 2022. - 10 S.
In: Nephrology, dialysis, transplantation, ISSN 1460-2385. 37(2022), 4, Seite 628-637
DOI: 10.1093/ndt/gfaa233
Barsi, Szilvia: Computational drug repurposing against SARS-CoV-2 reveals plasma membrane cholesterol depletion as key factor of antiviral drug activity / Szilvia Barsi, Henrietta Papp, Alberto Valdeolivas, Dániel J. Tóth, Anett Kuczmog, Mónika Madai, Lás… , April 11, 2022. - 20 S. : Illustrationen
In: PLoS Computational Biology, ISSN 1553-7358. 18(2022), 4, Artikel-ID e1010021, Seite 1-20
DOI: 10.1371/journal.pcbi.1010021
Mathur, Lukas: Combi-seq for multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets / L. Mathur, B. Szalai, N.H. Du, R. Utharala, M. Ballinger, J.J.M. Landry, M. Ryckelynck, V. Benes, J.… , 01 August 2022. - 15 S.
In: Nature Communications, ISSN 2041-1723. 13(2022), Artikel-ID 4450, Seite 1-15
DOI: 10.1038/s41467-022-32197-0
Garrido-Rodriguez, Martin: Integrating knowledge and omics to decipher mechanisms via large-scale models of signaling networks / Martin Garrido-Rodriguez, Katharina Zirngibl, Olga Ivanova, Sebastian Lobentanzer & Julio Saez-Rodri… , 31 May 2022. - 15 S.
In: Molecular systems biology, ISSN 1744-4292. 18(2022), 7, Artikel-ID 11036, Seite 1-15
DOI: 10.15252/msb.202211036
Kay, Emily J.: Cancer-associated fibroblasts require proline synthesis by PYCR1 for the deposition of pro-tumorigenic extracellular matrix / Emily J. Kay, Karla Paterson, Carla Riera-Domingo, David Sumpton, J. Henry M. Däbritz, Saverio Tardi… , 27 June 2022. - 18 S.
In: Nature metabolism, ISSN 2522-5812. 4(2022), 6, Seite 693-710
DOI: 10.1038/s42255-022-00582-0
Dimitrov, Daniel: Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data / Daniel Dimitrov, Dénes Türei, Martin Garrido-Rodriguez, Paul L. Burmedi, James S. Nagai, Charlotte B… , 09 June 2022. - 13 S.
In: Nature Communications, ISSN 2041-1723. 13(2022), Artikel-ID 3224, Seite 1-13
DOI: 10.1038/s41467-022-30755-0
Pérez-Martí, Albert: Reducing lipid bilayer stress by monounsaturated fatty acids protects renal proximal tubules in diabetes / Albert Pérez-Martí, Suresh Ramakrishnan, Jiayi Li, Aurelien Dugourd, Martijn R Molenaar, Luigi R De … , May 12, 2022. - 31 S.
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e74391, Seite 1-31
DOI: 10.7554/eLife.74391
Wanner, Nicola: Molecular consequences of SARS-CoV-2 liver tropism / Nicola Wanner, Geoffroy Andrieux, Pau Badia-i-Mompel, Carolin Edler, Susanne Pfefferle, Maja T. Lind… , 28 March 2022. - 10 S.
In: Nature metabolism, ISSN 2522-5812. 4(2022), 3 vom: März, Seite 310-319
DOI: 10.1038/s42255-022-00552-6
Montagud, Arnau: Patient-specific Boolean models of signalling networks guide personalised treatments / Arnau Montagud, Jonas Béal, Luis Tobalina, Pauline Traynard, Vigneshwari Subramanian, Bence Szalai, … , Feb 15, 2022. - 81 S.
In: eLife, ISSN 2050-084X. 11(2022), Artikel-ID e72626, Seite 1-81
DOI: 10.7554/eLife.72626
Poletti, Martina: Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airways / Martina Poletti, Agatha Treveil, Luca Csabai, Leila Gul, Dezso Modos, Matthew Madgwick, Marton Olbei… , 02 May 2022. - 19 S.
In: npj Systems biology and applications, ISSN 2056-7189. 8(2022), 1, Artikel-ID 15, Seite 1-19
DOI: 10.1038/s41540-022-00224-x
Robrahn, Laura Marie: Stabilization but no functional influence of HIF-1α expression in the intestinal epithelium during salmonella typhimurium infection / Laura Robrahn, Aline Dupont, Sandra Jumpertz, Kaiyi Zhang, Christian H. Holland, Joël Guillaume, Sab… , 17 February 2022
In: Infection and immunity, ISSN 1098-5522. 90(2022), 2, Artikel-ID e00222-21
DOI: 10.1128/iai.00222-21
Tanevski, Jovan: Explainable multiview framework for dissecting spatial relationships from highly multiplexed data / Jovan Tanevski, Ricardo Omar Ramirez Flores, Attila Gabor, Denis Schapiro and Julio Saez-Rodriguez, 14 April 2022. - 31 S.
In: Genome biology, ISSN 1474-760X. 23(2022), Artikel-ID 97, Seite 1-31
DOI: 10.1186/s13059-022-02663-5
Parigi, Sara M.: The spatial transcriptomic landscape of the healing mouse intestine following damage / Sara M. Parigi, Ludvig Larsson, Srustidhar Das, Ricardo O. Ramirez Flores, Annika Frede, Kumar P. Tr… , 11 February 2022. - 16 S.
In: Nature Communications, ISSN 2041-1723. 13(2022), Artikel-ID 828, Seite 1-16
DOI: 10.1038/s41467-022-28497-0
Reusch, Björn: MAGED2 controls vasopressin-induced aquaporin-2 expression in collecting duct cells / Björn Reusch, Malte P. Bartram, Claudia Dafinger, Nicolàs Palacio-Escat, Andrea Wenzel, Robert A. Fe… , 2022. - 9 S.
In: Journal of proteomics, ISSN 1876-7737. 252(2022), 2, Artikel-ID 104424, Seite 1-9
DOI: 10.1016/j.jprot.2021.104424
Rinschen, Markus Matthias: The tissue proteome in the multi-omic landscape of kidney disease / Markus M. Rinschen, Julio Saez-Rodriguez, March 2021. - 15 S.
In: Nature reviews, ISSN 1759-507X. 17(2021), 3 vom: März, Seite 205-219
DOI: 10.1038/s41581-020-00348-5
Kuppe, Christoph: Decoding myofibroblast origins in human kidney fibrosis / Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Ziegler, Javier Perales… , 14 January 2021. - 6 S. : Illustrationen, Diagramme
In: Nature, ISSN 1476-4687. 589(2021) vom: Jan., Seite 281-286
DOI: 10.1038/s41586-020-2941-1
Song, Chen: Spatial effect on separatrix of two-cell system and parameter sensitivity analysis / Chen Song, Jonas Roller, Ana Victoria Ponce-Bobadilla, Nicolas Palacio-Escat, Julio Saez-Rodriguez, … . -
Heidelberg: Univ.-Bibliothek, April 22, 2021. - 1 Online-Ressource (15 Seiten)
(Preprint series of the Engineering Mathematics and Computing Lab (EMCL) ; Preprint no. 2020-01)
DOI: 10.11588/emclpp.2021.01.81012
Tognetti, Marco: Deciphering the signaling network of breast cancer improves drug sensitivity prediction / Marco Tognetti, Attila Gabor, Mi Yang, Valentina Cappelletti, Jonas Windhager, Oscar M. Rueda, Konst… , April 30, 2021. - 30 S.
In: Cell systems, ISSN 2405-4720. 12(2021), 5 vom: 19. Mai, Seite 401-418, e1-e12
DOI: 10.1016/j.cels.2021.04.002
Ostaszewski, Marek: COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms / Marek Ostaszewski, Anna Niarakis, Alexander Mazein, Inna Kuperstein, Robert Phair, Aurelio Orta-Rese… , OCT 2021. - 22 S.
In: Molecular systems biology, ISSN 1744-4292. 17(2021), 10, Artikel-ID e10387, Seite 1-22
DOI: 10.15252/msb.202110387
Callegaro, Giulia: The human hepatocyte TXG-MAPr : gene co-expression network modules to support mechanism-based risk assessment / Giulia Callegaro, Steven J. Kunnen, Panuwat Trairatphisan, Solène Grosdidier, Marije Niemeijer, Wout… , 9 October 2021. - 31 S.
In: Archives of toxicology, ISSN 1432-0738. 95(2021), 12, Seite 3745-3775
DOI: 10.1007/s00204-021-03141-w
Lone, Anna Mari: Systems approach reveals distinct and shared signaling networks of the four PGE2 receptors in T cells / Anna M. Lone, Piero Giansanti, Marthe Jøntvedt Jørgensen, Enio Gjerga, Aurelien Dugourd, Arjen Schol… , 5 Oct 2021. - 19 S.
In: Science signaling, ISSN 1937-9145. 14(2021), 703, Artikel-ID eabc8579, Seite 1-19
DOI: 10.1126/scisignal.abc8579
Gabor, Attila: Cell-to-cell and type-to-type heterogeneity of signaling networks : insights from the crowd / Attila Gabor, Marco Tognetti, Alice Driessen, Jovan Tanevski, Baosen Guo, Wencai Cao, He Shen, Thoma… , 28 September 2021. - 16 S.
In: Molecular systems biology, ISSN 1744-4292. 17(2021), 10, Artikel-ID e10402, Seite 1-16
DOI: 10.15252/msb.202110402
Dräger, Andreas: SysMod : the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems / Andreas Dräger, Tomáš Helikar, Matteo Barberis, Marc Birtwistle, Laurence Calzone, Claudine Chaouiya… , 24 June 2021. - 5 S.
In: Bioinformatics, ISSN 1367-4811. 37(2021), 11, Seite 3702-3706
DOI: 10.1093/bioinformatics/btab229
Mazein, Alexander: Reusability and composability in process description maps : RAS-RAF-MEK-ERK signalling / Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Saez-Rodriguez, Marek Ostaszewski and Reinh… , 08 April 2021. - 8 S.
In: Briefings in bioinformatics, ISSN 1477-4054. 22(2021), 5, Artikel-ID bbab103, Seite 1-8
DOI: 10.1093/bib/bbab103
Lanzer, Peter: Medial arterial calcification : JACC state-of-the-art review / Peter Lanzer, MD, Fadil M. Hannan, DPhil, Jan D. Lanzer, MD, Jan Janzen, MD, Paolo Raggi, MD, Domini… , 6 September 2021. - 21 S.
In: Journal of the American College of Cardiology, ISSN 1558-3597. 78(2021), 11 vom: 14. Sept., Seite 1145-1165
DOI: 10.1016/j.jacc.2021.06.049
Tillie, Renée J. H. A.: Partial inhibition of the 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase-3 (PFKFB3) enzyme in myeloid cells does not affect atherosclerosis / Renée J.H.A. Tillie, Jenny De Bruijn, Javier Perales-Patón, Lieve Temmerman, Yanal Ghosheh, Kim Van … , 12 August 2021. - 11 S.
In: Frontiers in cell and developmental biology, ISSN 2296-634X. 9(2021), Artikel-ID 695684, Seite 1-11
DOI: 10.3389/fcell.2021.695684
Bernardo Faura, Martí: Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis / Marti Bernardo-Faura, Melanie Rinas, Jakob Wirbel, Inna Pertsovskaya, Vicky Pliaka, Dimitris E. Mess… , 16 July 2021. - 16 S.
In: Genome medicine, ISSN 1756-994X. 13(2021), Artikel-ID 117, Seite 1-16
DOI: 10.1186/s13073-021-00925-8
Schwabenland, Marius: Deep spatial profiling of human COVID-19 brains reveals neuroinflammation with distinct microanatomical microglia-T-cell interactions / Marius Schwabenland, Henrike Salié, Jovan Tanevski, Saskia Killmer, Marilyn Salvat Lago, Alexandra E… , 9 June 2021. - 28 S.
In: Immunity, ISSN 1097-4180. 54(2021), 7, Seite 1594-1610, e1-e11
DOI: 10.1016/j.immuni.2021.06.002
Wijaya, Lukas Surya: Integration of temporal single cell cellular stress response activity with logic-ODE modeling reveals activation of ATF4-CHOP axis as a critical predictor of drug-induced liver injury / Lukas Surya Wijaya, Panuwat Trairatphisan, Attila Gabor, Marije Niemeijer, Jason Keet, Ariadna Alcal… , 4 May 2021. - 17 S.
In: Biochemical pharmacology, ISSN 1873-2968. 190(2021) vom: Aug., Artikel-ID 114591, Seite 1-17
DOI: 10.1016/j.bcp.2021.114591
Trairatphisan, Panuwat: Contextualization of causal regulatory networks from toxicogenomics data applied to drug-induced liver injury / Panuwat Trairatphisan, Terezinha Maria de Souza, Jos Kleinjans, Danyel Jennen, Julio Saez-Rodriguez, 3 July 2021. - 12 S.
In: Toxicology letters, ISSN 1879-3169. 350(2021), Seite 40-51
DOI: 10.1016/j.toxlet.2021.06.020
Martorell-Marugán, Jordi: A comprehensive database for integrated analysis of omics data in autoimmune diseases / Jordi Martorell-Marugán, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Ant… , 24 June 2021. - 14 S.
In: BMC bioinformatics, ISSN 1471-2105. 22(2021), Artikel-ID 343, Seite 1-14
DOI: 10.1186/s12859-021-04268-4
Niarakis, Anna: Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod workshop / Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman S Malik Sheriff, Cristina Casals-Casas, Den… , 2021. - 12 S.
In: Briefings in bioinformatics, ISSN 1477-4054. 22(2021), 2 vom: März, Seite 1848-1859
DOI: 10.1093/bib/bbaa046
Meyer, Pablo: Advances in systems biology modeling : 10 years of crowdsourcing DREAM challenges / Pablo Meyer and Julio Saez-Rodriguez, June 16, 2021. - 18 S.
In: Cell systems, ISSN 2405-4720. 12(2021), 6, Seite 636-653
DOI: 10.1016/j.cels.2021.05.015
Petkevicius, Kasparas: Norepinephrine promotes triglyceride storage in macrophages via beta2-adrenergic receptor activation / Kasparas Petkevicius, Guillaume Bidault, Sam Virtue, Benjamin Jenkins, Xanthe A.M.H. van Dierendonck… , 23 January 2021. - 18 S.
In: The FASEB journal, ISSN 1530-6860. 35(2021), 2 vom: Feb., Artikel-ID e21266, Seite 1-18
DOI: 10.1096/fj.202001101R
Türei, Dénes: Integrated intra- and intercellular signaling knowledge for multicellular omics analysis / Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio-Escat, Michal Klein, Olga Ivanova, Márt… , 22 March 2021. - 16 S.
In: Molecular systems biology, ISSN 1744-4292. 17(2021), 3, Artikel-ID e9923, Seite 1-16
DOI: 10.15252/msb.20209923
Lopez-Dominguez, Raul: Transcription factor activity inference in Systemic Lupus Erythematosus / Raul Lopez-Dominguez, Daniel Toro-Dominguez, Jordi Martorell-Marugan, Adrian Garcia-Moreno, Christia… , 1 April 2021. - 12 S.
In: Life, ISSN 2075-1729. 11(2021), 4, Artikel-ID 299, Seite 1-12
DOI: 10.3390/life11040299
Ramirez Flores, Ricardo O.: Consensus Transcriptional Landscape of Human End‐Stage Heart Failure / Ricardo O. Ramirez Flores, BSc; Jan D. Lanzer, MD; Christian H. Holland, MSc; Florian Leuschner, MD;… , 31 Mar 2021. - 40 S.
In: Journal of the American Heart Association, ISSN 2047-9980. 10(2021), 7, Artikel-ID e019667, Seite 1-40
DOI: 10.1161/JAHA.120.019667
Gjerga, Enio: PHONEMeS : efficient modeling of signaling networks derived from large-scale mass spectrometry data / Enio Gjerga, Aurelien Dugourd, Luis Tobalina, Abel Sousa, and Julio Saez-Rodriguez, 8 March 2021. - 7 S.
In: Journal of proteome research, ISSN 1535-3907. 20(2021), 4, Seite 2138-2144
DOI: 10.1021/acs.jproteome.0c00958
Moreno-Indias, Isabel: Statistical and machine learning techniques in human microbiome studies : contemporary challenges and solutions / Isabel Moreno-Indias, Leo Lahti, Miroslava Nedyalkova, Ilze Elbere, Gennady Roshchupkin, Muhamed Adi… , 22 February 2021. - 9 S.
In: Frontiers in microbiology, ISSN 1664-302X. 12(2021), Artikel-ID 635781, Seite 1-9
DOI: 10.3389/fmicb.2021.635781
Mohs, Antje: Hepatocyte-specific NRF2 activation controls fibrogenesis and carcinogenesis in steatohepatitis / Antje Mohs, Tobias Otto, Kai Markus Schneider, Mona Peltzer, Mark Boekschoten, Christian H. Holland,… , 2021. - 11 S.
In: Journal of hepatology, ISSN 1600-0641. 74(2021), 3, Seite 638-648
DOI: 10.1016/j.jhep.2020.09.037
Cappelletti, Valentina: Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ / Valentina Cappelletti, Thomas Hauser, Ilaria Piazza, Monika Pepelnjak, Liliana Malinovska, Tobias Fu… , 2021. - 15 S.
In: Cell, ISSN 1097-4172. 184(2021), 2, Seite 545-559
DOI: 10.1016/j.cell.2020.12.021
Dugourd, Aurélien: Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses / Aurelien Dugourd, Christoph Kuppe, Marco Sciacovelli, Enio Gjerga, Attila Gabor, Kristina B. Emdal, … , 27 January 2021. - 17 S.
In: Molecular systems biology, ISSN 1744-4292. 17(2021), 1, Artikel-ID e9730, Seite 1-17
DOI: 10.15252/msb.20209730
Lanzer, Jan David: Big data approaches in heart failure research / Jan D. Lanzer, Florian Leuschner, Rafael Kramann, Rebecca T. Levinson, Julio Saez-Rodriguez, 12 August 2020. - 12 S.
In: Current heart failure reports, ISSN 1546-9549. 17(2020), 5, Seite 213-224
DOI: 10.1007/s11897-020-00469-9
Szalai, Bence: Why do pathway methods work better than they should? / Bence Szalai and Julio Saez-Rodriguez, 14 December 2020. - 12 S.
In: FEBS letters, ISSN 1873-3468. 594(2020), 24 vom: 14. Dez., Seite 4189-4200
DOI: 10.1002/1873-3468.14011
Touré, Vasundra: The minimum information about a molecular interaction causal statement (MI2CAST) / Vasundra Touré, Steven Vercruysse, Marcio Luis Acencio, Ruth C. Lovering, Sandra Orchard, Glyn Bradl… , 8 July 2020. - 7 S.
In: Bioinformatics, ISSN 1367-4811. 36(2020), 24 vom: 15. Dez., Seite 5712-5718
DOI: 10.1093/bioinformatics/btaa622
Yang, Mi: Stratification and prediction of drug synergy based on target functional similarity / Mi Yang, Patricia Jaaks, Jonathan Dry, Mathew Garnett, Michael P. Menden and Julio Saez-Rodriguez, 02 June 2020. - 10 S.
In: npj Systems biology and applications, ISSN 2056-7189. 6(2020), Artikel-ID 16, Seite 1-10
DOI: 10.1038/s41540-020-0136-x
Tanevski, Jovan: Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data / Jovan Tanevski, Thin Nguyen, Buu Truong, Nikos Karaiskos, Mehmet Eren Ahsen, Xinyu Zhang, Chang Shu,… , 24 September, 2020. - 13 S.
In: Life science alliance, ISSN 2575-1077. 3(2020,11) Artikel-Nummer 202000867, 13 Seiten
DOI: 10.26508/lsa.202000867
Wang, Dennis: A statistical framework for assessing pharmacological responses and biomarkers using uncertainty estimates / Dennis Wang, James Hensman, Ginte Kutkaite, Tzen S Toh, Ana Galhoz, GDSC Screening Team, Jonathan R … , 04 December 2020. - 21 S.
In: eLife, ISSN 2050-084X. 9(2020) Artikel-Nummer e60352, 21 Seiten
DOI: 10.7554/eLife.60352
Gjerga, Enio: Converting networks to predictive logic models from perturbation signalling data with CellNOpt / Enio Gjerga, Panuwat Trairatphisan, Attila Gabor, Hermann Koch, Celine Chevalier, Franceco Ceccarell… , 09 June 2020. - 2 S.
In: Bioinformatics, ISSN 1367-4811. 36(2020), 16, Seite 4523-4524
DOI: 10.1093/bioinformatics/btaa561
Sellmayr, Markus: Only hyperuricemia with crystalluria, but not asymptomatic hyperuricemia, drives progression of chronic kidney disease / Markus Sellmayr, Moritz Roman Hernandez Petzsche, Qiuyue Ma, Nils Krüger, Helen Liapis, Andreas Brin… , November 25, 2020. - 20 S.
In: Journal of the American Society of Nephrology, ISSN 1533-3450. 31(2020), 12, Seite 2773-2792
DOI: 10.1681/ASN.2020040523
Maier-Hein, Lena: BIAS : transparent reporting of biomedical image analysis challenges / Lena Maier-Hein, Annika Reinke, Michal Kozubek, Anne L. Martel, Tal Arbel, Matthias Eisenmann, Allan… , 21 August 2020. - 7 S.
In: Medical image analysis, ISSN 1361-8423. 66(2020) Artikel-Nummer 101796, 7 Seiten
DOI: 10.1016/j.media.2020.101796
Gleitz, Hélène: Increased CXCL4 expression in hematopoietic cells links inflammation and progression of bone marrow fibrosis in MPN / Hélène F.E. Gleitz, Aurélien J.F. Dugourd, Nils B. Leimkühler, Inge A.M. Snoeren, Stijn N.R. Fuchs, … , 29 October 2020. - 14 S.
In: Blood, ISSN 1528-0020. 136(2020), 18, Seite 2051-2064
DOI: 10.1182/blood.2019004095
Buhl, Eva Miriam: Dysregulated mesenchymal PDGFR-β drives kidney fibrosis / Eva M. Buhl, Sonja Djudjaj, Barbara M. Klinkhammer, Katja Ermert, Victor G. Puelles, Maja T. Lindenm… , 14 January 2020
In: EMBO molecular medicine, ISSN 1757-4684. 12(2020,3) Artikel-Nummer e11021, 20 Seiten
DOI: 10.15252/emmm.201911021
Eduati, Federica: Patient-specific logic models of signaling pathways from screenings on cancer biopsies to prioritize personalized combination therapies / Federica Eduati, Patricia Jaaks, Jessica Wappler, Thorsten Cramer, Christoph A Merten, Mathew J Garn… , 19 February 2020. - 13 S.
In: Molecular systems biology, ISSN 1744-4292. 16(2020,2) Artikel-Nummer e8664, 13 Seiten
DOI: 10.15252/msb.20188664
Yang, Mi: Community assessment of the predictability of cancer protein and phosphoprotein levels from genomics and transcriptomics / Mi Yang, Francesca Petralia, Zhi Li, Hongyang Li, Weiping Ma, Xiaoyu Song, Sunkyu Kim, Heewon Lee, H… , [August 26, 2020]. - 19 S. : Illustrationen
In: Cell systems, ISSN 2405-4720. 11(2020,2) Seite 186-195, e1-e9
DOI: 10.1016/j.cels.2020.06.013
Manica, Matteo: Inferring clonal composition from multiple tumor biopsies / Matteo Manica, Hyunjae Ryan Kim, Roland Mathis, Philippe Chouvarine, Dorothea Rutishauser, Laura De … , [2020]. - 13 S.
In: npj Systems biology and applications, ISSN 2056-7189. 6(2020), 1, Seite 1-13
DOI: 10.1038/s41540-020-00147-5
Najgebauer, Hanna: CELLector : genomics-guided selection of cancer in vitro models / Hanna Najgebauer, Mi Yang, Hayley E. Francies, Clare Pacini, Euan A. Stronach, Mathew J. Garnett, Ju… , 20 May 2020. - 15 S.
In: Cell systems, ISSN 2405-4720. 10(2020), 5, Seite 424-432.e6
DOI: 10.1016/j.cels.2020.04.007
Holland, Christian H.: Transfer of regulatory knowledge from human to mouse for functional genomics analysis / Christian H. Holland, Bence Szalai, Julio Saez-Rodriguez, 2020. - 8 S.
In: Biochimica et biophysica acta, ISSN 1876-4320. 1863(2020,6) Artikel-Nummer 194431, 8 Seiten
DOI: 10.1016/j.bbagrm.2019.194431
Sáez Rodríguez, Julio: Personalized signaling models for personalized treatments / Julio Saez-Rodriguez, & Nils Blüthgen, 9 January 2020. - 3 S.
In: Molecular systems biology, ISSN 1744-4292. 16(2020,1) Artikel-Nummer e9042, 3 Seiten
DOI: 10.15252/msb.20199042
Holland, Christian H.: Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data / Christian H. Holland, Jovan Tanevski, Javier Perales-Patón, Jan Gleixner, Manu P. Kumar, Elisabetta … , 12 February 2020. - 19 S. : Diagramme
In: Genome biology, ISSN 1474-760X. 21(2020) Artikel-Nummer 36, Seite 1-19, 19 Seiten
DOI: 10.1186/s13059-020-1949-z
Choobdar, Sarvenaz: Assessment of network module identification across complex diseases / Sarvenaz Choobdar, Mehmet E. Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, David Lamparter, Junyu… , 30 August 2019. - 10 S.
In: Nature methods, ISSN 1548-7105. 16(2019), 9, Seite 843-852
DOI: 10.1038/s41592-019-0509-5
Ceccarelli, Francesco: Bringing data from curated pathway resources to cytoscape with OmniPath / Francesco Ceccarelli, Denes Turei, Attila Gabor and Julio Saez-Rodriguez, 2020. - 2 S.
In: Bioinformatics, ISSN 1367-4811. 36(2020), 8, Seite 2632-2633
DOI: 10.1093/bioinformatics/btz968
Liu, Anika: From expression footprints to causal pathways : contextualizing large signaling networks with CARNIVAL / Anika Liu, Panuwat Trairatphisan, Enio Gjerga, Athanasios Didangelos, Jonathan Barratt and Julio Sae… , 11 November 2019. - 10 S.
In: npj Systems biology and applications, ISSN 2056-7189. 5(2019,1) Artikel- Nummer 40, 10 Seiten
DOI: 10.1038/s41540-019-0118-z
Tajti, Ferenc: A functional landscape of CKD entities from public transcriptomic data / Ferenc Tajti, Christoph Kuppe, Asier Antoranz, Mahmoud M. Ibrahim, Hyojin Kim, Francesco Ceccarelli,… , 2020. - 14 S.
In: Kidney international, ISSN 2468-0249. 5(2020), 2, Seite 211-224
DOI: 10.1016/j.ekir.2019.11.005
Rinschen, Markus Matthias: Metabolic rewiring of the hypertensive kidney / Markus M. Rinschen, Oleg Palygin, Carlos Guijas, Amelia Palermo, Nicolas Palacio-Escat, Xavier Domin… , 10 Dec 2019. - ?
In: Science signaling, ISSN 1937-9145. 12(2019,611) Artikel-Nummer eaax9760
DOI: 10.1126/scisignal.aax9760
Sáez Rodríguez, Julio: The authors reply [Big data: creating the right balance] : letter to the editor / Julio Saez-Rodriguez, Markus M. Rinschen, Jürgen Floege and Rafael Kramann, 20 November 2019. - 2 S.
In: Kidney international, ISSN 1523-1755. 96(2019), 6, Seite 1422-1423
Ghallab, Ahmed: Influence of liver fibrosis on lobular zonation / Ahmed Ghallab, Maiju Myllys, Christian H. Holland, Ayham Zaza, Walaa Murad, Reham Hassan, Yasser A. … , 2 December 2019. - 21 S.
In: Cells, ISSN 2073-4409. 8(2019,12) Artikel-Nummer 1556, 21 Seiten
DOI: 10.3390/cells8121556
Kotelnikova, Ekaterina: MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis / Ekaterina Kotelnikova, Narsis A. Kiani, Dimitris Messinis, Inna Pertsovskaya, Vicky Pliaka, Marti Be… , April 19, 2019. - 6 S.
In: Proceedings of the National Academy of Sciences of the United States of America, ISSN 1091-6490. 116(2019), 19, Seite 9671-9676
DOI: 10.1073/pnas.1818347116
Sáez Rodríguez, Julio: Big science and big data in nephrology / Julio Saez-Rodriguez, Markus M. Rinschen, Jürgen Floege and Rafael Kramann, 5 March 2019. - 12 S.
In: Kidney international, ISSN 1523-1755. 95(2019), 6, Seite 1326-1337
DOI: 10.1016/j.kint.2018.11.048
Szalai, Bence: Signatures of cell death and proliferation in perturbation transcriptomics data : from confounding factor to effective prediction / Bence Szalai, Vigneshwari Subramanian, Christian H. Holland, Robert Alfoldi, Laszlo G. Puskas and Ju… , 25 September 2019. - 17 S.
In: Nucleic acids research, ISSN 1362-4962. 47(2019), 19, Seite 10010-10026
DOI: 10.1093/nar/gkz805
Menden, Michael: Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen / Michael P. Menden, Dennis Wang, Mike J. Mason, Bence Szalai, Krishna C. Bulusu, Yuanfang Guan, Thoma… , Jun 17 2019. - 17 S.
In: Nature Communications, ISSN 2041-1723. 10(2019) Artikel-Nummer 2674, 17 Seiten
DOI: 10.1038/s41467-019-09799-2
Garcia-Alonso, Luz: Benchmark and integration of resources for the estimation of human transcription factor activities / Luz Garcia-Alonso, Christian H. Holland, Mahmoud M. Ibrahim, Denes Turei, and Julio Saez-Rodriguez, July 24, 2019. - 14 S.
In: Genome research, ISSN 1549-5469. 29(2019), 8, Seite 1363-1375
DOI: 10.1101/gr.240663.118
Manica, Matteo: Toward explainable anticancer compound sensitivity prediction via multimodal attention-based convolutional encoders / Matteo Manica, Ali Oskooei, Jannis Born, Vigneshwari Subramanian, Julio Sáez-Rodríguez, and María Ro… , October 16, 2019. - 10 S.
In: Molecular pharmaceutics, ISSN 1543-8392. 16(2019), 12, Seite 4797-4806
DOI: 10.1021/acs.molpharmaceut.9b00520
Tang, Jing: Network pharmacology modeling identifies synergistic Aurora B and ZAK interaction in triple-negative breast cancer / Jing Tang, Prson Gautam, Abhishekh Gupta, Liye He, Sanna Timonen, Yevhen Akimov, Wenyu Wang, Agniesz… , 08 July 2019. - 11 S.
In: npj Systems biology and applications, ISSN 2056-7189. 5(2019), 1, Seite 1-11
DOI: 10.1038/s41540-019-0098-z
Arnol, Damien: Modeling cell-cell interactions from spatial molecular data with spatial variance component analysis / Damien Arnol, Denis Schapiro, Bernd Bodenmiller, Julio Saez-Rodriguez, Oliver Stegle, 1 October 2019. - 17 S.
In: Cell reports, ISSN 2211-1247. 29(2019), 1, Seite 202-211.e6
DOI: 10.1016/j.celrep.2019.08.077
Schäfer, Alexander: Elucidating essential kinases of endothelin signalling by logic modelling of phosphoproteomics data / Alexander Schäfer, Enio Gjerga, Richard WD Welford, Imke Renz, Francois Lehembre, Peter MA Groenen, … , 6 August 2019. - 19 S.
In: Molecular systems biology, ISSN 1744-4292. 15(2019,8) Artikel-Nummer e8828, 19 Seiten
DOI: 10.15252/msb.20198828
Gajjala, Prathibha Reddy: Novel plasma peptide markers involved in the pathology of CKD identified using mass spectrometric approach / Prathibha R. Gajjala, Heike Bruck, Heidi Noels, Georg Heinze, Francesco Ceccarelli, Andreas Kribben,… , 5 August 2019. - 13 S.
In: Journal of molecular medicine, ISSN 1432-1440. 97(2019), 10, Seite 1451-1463
DOI: 10.1007/s00109-019-01823-8
Ellrott, Kyle: Reproducible biomedical benchmarking in the cloud : lessons from crowd-sourced data challenges / Kyle Ellrott, Alex Buchanan, Allison Creason, Michael Mason, Thomas Schaffter, Bruce Hoff, James Edd… , 10 September 2019. - 9 S.
In: Genome biology, ISSN 1474-760X. 20(2019) Artikel-Nummer 195, 9 Seiten
DOI: 10.1186/s13059-019-1794-0
Behan, Fiona M.: Prioritization of cancer therapeutic targets using CRISPR-Cas9 screens / Fiona M. Behan, Francesco Iorio, Gabriele Picco, Emanuel Gonçalves, Charlotte M. Beaver, Giorgia Mig… , 10 April 2019. - 6 S.
In: Nature, ISSN 1476-4687. 568(2019), 7753, Seite 511-516
DOI: 10.1038/s41586-019-1103-9
Sun, Qinxue: Elastin imaging enables noninvasive staging and treatment monitoring of kidney fibrosis / Qinxue Sun, Maike Baues, Barbara M. Klinkhammer, Josef Ehling, Sonja Djudjaj, Natascha I. Drude, Chr… , 03 Apr 2019. - 14 S.
In: Science translational medicine, ISSN 1946-6242. 11(2019,486) Artikel-Nummer eaat4865, 14 Seiten
DOI: 10.1126/scitranslmed.aat4865
Gonzalez, Patricia: Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology / Patricia González, Pablo Argüeso-Alejandro, David R. Penas, Xoan C. Pardo, Julio Saez-Rodriguez, Jul… , 08 May 2019. - 28 S.
In: The journal of supercomputing, ISSN 1573-0484. 75(2019), 7, Seite 3471-3498
DOI: 10.1007/s11227-019-02871-0
Lun, Xiaokang: Analysis of the Human Kinome and Phosphatome by Mass Cytometry Reveals Overexpression-Induced Effects on Cancer-Related Signaling / Xiao-Kang Lun, Damian Szklarczyk, Attila Gábor, ..., Julio Saez-Rodriguez, Christian von Mering, Ber… , 14 May 2019. - 23 S.
In: Molecular cell, ISSN 1097-4164. 74(2019), 5, Seite 1086-1102,e1-e5
DOI: 10.1016/j.molcel.2019.04.021
Picco, Gabriele: Functional linkage of gene fusions to cancer cell fitness assessed by pharmacological and CRISPR-Cas9 screening / Gabriele Picco, Elisabeth D. Chen, Luz Garcia Alonso, Fiona M. Behan, Emanuel Gonçalves, Graham Bign… , 16 May 2019. - 12 S.
In: Nature Communications, ISSN 2041-1723. 10(2019) Artikel-Nummer 2198, 12 Seiten
DOI: 10.1038/s41467-019-09940-1
Liu, Yansheng: Multi-omic measurements of heterogeneity in HeLa cells across laboratories / Yansheng Liu, Yang Mi, Torsten Mueller, Saskia Kreibich, Evan G. Williams, Audrey Van Drogen, Christ… , 18 February 2019. - 9 S.
In: Nature biotechnology, ISSN 1546-1696. 37(2019), 3, Seite 314-322
DOI: 10.1038/s41587-019-0037-y
Souza, Terezinha: Embracing the dark side : computational approaches to unveil the functionality of genes lacking biological annotation in drug-induced liver injury / Terezinha Souza, Panuwat Trairatphisan, Janet Piñero, Laura I. Furlong, Julio Saez-Rodriguez, Jos Kl… , 20 November 2018. - 12 S.
In: Frontiers in genetics, ISSN 1664-8021. 9(2018) Artikel-Nummer 527, 12 Seiten
DOI: 10.3389/fgene.2018.00527
Wirbel, Jakob: Phosphoproteomics-based profiling of kinase activities in cancer cells / Jakob Wirbel, Pedro Cutillas, and Julio Saez-Rodriguez, 18 January 2018. - 30 S.
In: Cancer Systems Biology. (2018), Seite 103-132
DOI: 10.1007/978-1-4939-7493-1_6
Menden, Michael: The germline genetic component of drug sensitivity in cancer cell lines / Michael P. Menden, Francesco Paolo Casale, Johannes Stephan, Graham R. Bignell, Francesco Iorio, Ult… , 23 August 2018. - 8 S.
In: Nature Communications, ISSN 2041-1723. 9(2018) Artikel-Nummer 3385, 8 Seiten
DOI: 10.1038/s41467-018-05811-3
Eduati, Federica: A microfluidics platform for combinatorial drug screening on cancer biopsies / Federica Eduati, Ramesh Utharala, Dharanija Madhavan, Ulf Peter Neumann, Thomas Longerich, Thorsten … , 22 June 2018. - 13 S.
In: Nature Communications, ISSN 2041-1723. 9(2018) Article number: 2434, 13 Seiten
DOI: 10.1038/s41467-018-04919-w
Späth, Martin Richard: The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury / Martin R. Späth, Malte P. Bartram, Nicolàs Palacio-Escat, K. Johanna R. Hoyer, Cedric Debes, Fatih D… , 2019. - 17 S.
In: Kidney international, ISSN 1523-1755. 95(2019), 2, Seite 333-349
DOI: 10.1016/j.kint.2018.08.037
Iorio, Francesco: Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting / Francesco Iorio, Fiona M. Behan, Emanuel Gonçalves, Shriram G. Bhosle, Elisabeth Chen, Rebecca Sheph… . -
London ; Berlin ; Heidelberg: BioMed Central ; Springer, 13 August 2018. - 1 Online-Ressource (16 Seiten)
DOI: 10.1186/s12864-018-4989-y

IDs

GND:

133764362

Links

Sáez Rodríguez, Julio in ...

Export Publikationsliste

heiBIB

Bei fehlerhaften oder unvollständigen Angaben wenden Sie sich bitte an biblio@ub.uni-heidelberg.de.

Informationen zu heiBIB (inkl. Einbettung der Publikationslisten in eigene WWW-Seiten).

Impressum / Datenschutz Design